Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 3.3e-168 595.1 339 100.0
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 3.3e-160 568.5 339 95.6
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 5.7e-160 567.8 339 95.3
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.3e-159 566.6 339 95.0
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 9.1e-158 560.5 339 90.3
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 7.8e-133 477.6 345 84.3
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 9.3e-70 268.1 365 49.3
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 2.5e-67 260.0 362 51.7
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 6.5e-63 245.4 362 45.6
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 1.9e-62 243.8 323 48.9
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 2.4e-57 226.9 354 49.7
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 2.0e-56 223.8 351 47.9
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 1.0e-55 221.5 335 48.7
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 3.2e-54 216.5 331 46.2
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 4.2e-54 216.1 320 42.8
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 7.2e-54 215.3 356 45.8
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 9.4e-54 214.9 335 48.7
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 4.7e-53 212.6 360 41.4
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 2.3e-52 210.3 335 47.2
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 3.9e-52 209.5 337 44.2
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 5.1e-52 209.1 340 50.3
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 7.4e-51 205.3 343 46.9
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 9.7e-51 204.9 319 45.1
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 9.7e-51 204.9 349 46.1
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 9.7e-51 204.9 322 48.8
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.3e-50 204.5 331 42.6
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 2.2e-50 203.8 357 46.2
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 2.8e-50 203.4 321 48.0
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 2.8e-50 203.4 321 47.7
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 4.8e-50 202.6 331 42.6
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 7.0e-49 198.7 316 51.3
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.5e-48 197.6 334 45.5
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 1.7e-47 194.1 330 45.8
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 2.9e-47 193.4 330 45.8
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 1.1e-46 191.4 328 40.5
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 1.4e-46 191.0 331 45.6
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.9e-46 190.7 315 47.0
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 9.4e-46 188.3 320 45.0
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 9.4e-46 188.3 336 42.9
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 3.6e-45 186.4 320 44.7
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 4.7e-45 186.0 198 53.0
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 8.0e-45 185.3 325 38.8
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 8.0e-45 185.3 329 38.3
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 3.0e-44 183.3 338 42.9
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 5.2e-44 182.6 326 37.1
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 1.3e-42 177.9 320 39.7
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 2.8e-42 176.8 333 36.9
ClCG05G022630 Citrullus lanatus HOM05D004679 ORTHO05D005524 6.3e-42 175.6 329 37.4
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 8.2e-42 175.3 358 41.9
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 1.4e-41 174.5 333 36.0
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 1.8e-41 174.1 330 42.7
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 3.1e-41 173.3 339 37.5
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 3.1e-41 173.3 331 41.1
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 9.1e-41 171.8 193 49.7
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.2e-40 171.4 324 36.4
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 1.2e-40 171.4 303 44.9
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 1.6e-40 171.0 348 35.1
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 1.6e-40 171.0 333 35.7
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 3.5e-40 169.9 330 43.9
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 3.5e-40 169.9 332 35.2
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 5.9e-40 169.1 318 44.0
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 1.0e-39 168.3 314 43.9
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 1.7e-39 167.5 334 38.9
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 2.2e-39 167.2 329 37.4
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 5.0e-39 166.0 338 43.5
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 1.1e-38 164.9 314 44.3
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 1.5e-38 164.5 332 41.9
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.5e-38 164.5 284 41.5
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 1.9e-38 164.1 338 41.7
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 1.9e-38 164.1 319 37.9
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 3.2e-38 163.3 328 37.8
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 4.2e-38 162.9 322 39.4
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 3.0e-36 156.8 301 38.5
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 3.0e-36 156.8 327 35.8
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 6.7e-36 155.6 334 39.5
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 1.3e-34 151.4 324 37.7
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 2.8e-34 150.2 315 34.6
Aqoxy3G00274 Aquilegia oxysepala HOM05D004679 ORTHO05D005524 3.7e-34 149.8 363 41.0
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 4.8e-34 149.4 331 42.3
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 6.3e-34 149.1 315 34.0
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 2.4e-33 147.1 319 44.5
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 1.2e-32 144.8 185 45.9
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 3.5e-32 143.3 275 37.8
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 2.1e-29 134.0 336 39.0
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 6.1e-29 132.5 333 32.7
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 1.4e-28 131.3 336 31.5
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 2.0e-27 127.5 325 41.2
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 2.6e-27 127.1 330 40.0
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 2.6e-27 127.1 330 40.0
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 2.6e-27 127.1 330 40.9
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 2.6e-27 127.1 330 40.9
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 3.4e-27 126.7 302 35.4
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 4.4e-27 126.3 336 39.0
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.3e-26 124.8 336 35.4
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.3e-26 124.8 302 34.4
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 1.7e-26 124.4 336 39.9
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 1.7e-26 124.4 324 37.3
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 6.3e-26 122.5 322 34.8
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 6.3e-26 122.5 297 33.0
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 1.1e-25 121.7 339 40.1
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 1.4e-25 121.3 270 33.7
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.4e-25 121.3 336 40.8
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 2.4e-25 120.6 339 40.4
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 4.1e-25 119.8 332 35.2
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 5.4e-25 119.4 317 32.2
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 9.1e-25 118.6 339 39.8
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 1.6e-24 117.9 340 39.7
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 1.3e-23 114.8 269 32.3
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 1.7e-23 114.4 345 35.7
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 2.3e-23 114.0 194 40.2
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 2.9e-23 113.6 339 39.2
CsaV3_6G003280 Cucumis sativus L. HOM05D004679 ORTHO05D005524 6.6e-23 112.5 316 35.1
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 1.1e-22 111.7 157 43.3
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 1.9e-22 110.9 316 34.8
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 1.9e-22 110.9 311 33.4
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 2.5e-22 110.5 307 37.5
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 4.2e-22 109.8 185 40.0
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 9.5e-22 108.6 312 32.1
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 2.8e-21 107.1 308 35.1
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 6.1e-21 105.9 333 33.3
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 8.0e-21 105.5 311 30.9
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 1.0e-20 105.1 314 33.1
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 1.4e-20 104.8 306 37.3
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 4.0e-20 103.2 314 37.6
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 6.8e-20 102.4 302 31.8
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 8.9e-20 102.1 308 29.9
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.5e-19 101.3 148 39.9
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 3.4e-19 100.1 207 37.2
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 4.4e-19 99.8 311 35.7
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 1.7e-18 97.8 261 40.2
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 2.8e-18 97.1 312 33.0
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 1.8e-17 94.4 322 36.0
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 1.8e-17 94.4 322 36.0
Sed0011079 Sechium edule HOM05D004679 ORTHO05D005524 1.8e-17 94.4 321 29.6
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 2.4e-17 94.0 322 36.0
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 3.2e-17 93.6 320 36.6
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 4.1e-17 93.2 308 37.0
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 5.4e-17 92.8 260 34.2
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 3.5e-16 90.1 311 30.9
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 4.5e-16 89.7 317 32.5
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.0e-15 88.6 301 34.2
PSO017G6556 Papaver somniferum HOM05D004679 ORTHO05D005524 1.3e-15 88.2 350 38.3
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 1.7e-15 87.8 253 37.9
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.3e-15 87.4 295 34.2
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 5.0e-15 86.3 315 34.3
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 5.0e-15 86.3 275 34.5
Medtr1g110550 Medicago truncatula HOM05D004679 ORTHO05D005524 1.1e-14 85.1 275 34.9
ECA234G4300 Erigeron canadensis HOM05D004679 ORTHO05D005524 1.0e-12 78.6 129 38.8
Aa31LG7G9090 Aethionema arabicum HOM05D004679 ORTHO05D005524 1.8e-12 77.8 308 35.1
Gohir.A05G321608 Gossypium hirsutum HOM05D004679 ORTHO05D005524 2.0e-11 74.3 246 36.6
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 3.5e-08 63.5 67 52.2
Lj5g0021418 Lotus japonicus HOM05D004679 ORTHO05D005524 6.6e-07 59.3 165 30.9
ATR1125G023 Amborella trichopoda HOM05D004679 ORTHO05D005524 8.6e-07 58.9 199 31.7
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 4.3e-06 56.6 50 48.0
SEGI_14232 Sequoiadendron giganteum HOM05D017838 ORTHO05D018381 9.5e-06 55.5 160 29.4


User provided reference genes

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