Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G1123 Fragaria x ananassa HOM05D002631 ORTHO05D002861 4.9e-154 547.7 270 100.0
FvH4_4g23980 Fragaria vesca HOM05D002631 ORTHO05D002861 1.2e-99 367.1 196 94.9
FAN12G0566 Fragaria x ananassa HOM05D002631 ORTHO05D002861 1.9e-97 359.8 204 91.2
FAN17G0922 Fragaria x ananassa HOM05D002631 ORTHO05D002861 1.0e-95 354.0 204 90.7
RcHm_v2.0_Chr4g0430641 Rosa chinensis HOM05D002631 ORTHO05D002861 3.2e-89 332.4 202 86.6
FAN07G2898 Fragaria x ananassa HOM05D005946 ORTHO05D007340 2.9e-74 282.7 143 98.6
Prupe.1G229000 Prunus persica HOM05D002631 ORTHO05D002861 1.2e-38 164.5 209 49.8
MD16G1117200 Malus domestica HOM05D002631 ORTHO05D002861 1.3e-34 151.0 277 42.6
Potri.008G176300 Populus trichocarpa HOM05D002631 ORTHO05D002861 5.6e-25 119.0 232 34.5
Potri.010G058700 Populus trichocarpa HOM05D002631 ORTHO05D002861 3.6e-24 116.3 231 35.1
Dinv10972 Davidia involucrata HOM05D002631 ORTHO05D002861 5.2e-23 112.5 222 36.9
GSVIVG01010390001 Vitis vinifera HOM05D002631 ORTHO05D002861 4.9e-21 105.9 215 37.7
Sabra10G0046900 Salix brachista HOM05D002631 ORTHO05D002861 6.4e-21 105.5 254 32.3
Nn3g16504 Nelumbo nucifera HOM05D002631 ORTHO05D002861 2.4e-20 103.6 237 38.0
Manes.13G018000 Manihot esculenta HOM05D002631 ORTHO05D002861 2.1e-19 100.5 229 35.4
Nn4g22361 Nelumbo nucifera HOM05D002631 ORTHO05D002861 2.7e-19 100.1 236 34.3
TAR371G1118 Trochodendron aralioides HOM05D002631 ORTHO05D002861 6.0e-19 99.0 235 34.9
Cfa009334 Carpinus fangiana HOM05D002631 ORTHO05D002861 3.9e-18 96.3 233 33.9
Haze_12389 Corylus avellana HOM05D002631 ORTHO05D002861 3.9e-18 96.3 229 33.6
TAR629G0052 Trochodendron aralioides HOM05D002631 ORTHO05D002861 5.1e-18 95.9 222 35.6
CANSAT01G0961 Cannabis sativa HOM05D002631 ORTHO05D002861 6.6e-18 95.5 205 35.1
Sabra08G0134200 Salix brachista HOM05D002631 ORTHO05D002861 1.5e-17 94.4 239 31.8
COL.COLO4_20357 Corchorus olitorius HOM05D002631 ORTHO05D002861 1.9e-17 94.0 242 31.8
Nitab4.5_0000559g0430 Nicotiana tabacum HOM05D002631 ORTHO05D002861 4.3e-17 92.8 219 33.8
Actinidia04441 Actinidia chinensis HOM05D002631 ORTHO05D002861 9.5e-17 91.7 222 31.5
Duzib251G0117 Durio zibethinus HOM05D002631 ORTHO05D002861 2.1e-16 90.5 220 34.5
Ciclev10032698m.g Citrus clementina HOM05D002631 ORTHO05D002861 2.8e-16 90.1 228 33.3
Prupe.3G303900 Prunus persica HOM05D002631 ORTHO05D002861 3.6e-16 89.7 227 32.2
Sed0025656 Sechium edule HOM05D002631 ORTHO05D002861 3.6e-16 89.7 212 32.5
Peaxi162Scf00700g00133 Petunia axillaris HOM05D002631 ORTHO05D002861 4.7e-16 89.4 221 32.1
Migut.F00077 Erythranthe guttata HOM05D002631 ORTHO05D002861 8.1e-16 88.6 219 33.3
Dinv33351 Davidia involucrata HOM05D000172 ORTHO05D000781 1.4e-15 87.8 158 39.2
Actinidia30886 Actinidia chinensis HOM05D002631 ORTHO05D002861 3.1e-15 86.7 236 31.8
CSS0020364 Camellia sinensis var. sinensis HOM05D002631 ORTHO05D002861 4.0e-15 86.3 236 32.6
Atru.chr11.2298 Acer truncatum HOM05D002631 ORTHO05D002861 5.2e-15 85.9 174 36.8
Thecc.02G277100 Theobroma cacao HOM05D002631 ORTHO05D002861 6.8e-15 85.5 223 35.0
Duzib264G0548 Durio zibethinus HOM05D002631 ORTHO05D002861 8.9e-15 85.1 229 33.2
Hma1.2p1_0279F.1_g112600 Hydrangea macrophylla HOM05D002631 ORTHO05D002861 8.9e-15 85.1 247 31.2
QL03p053884 Quercus lobata HOM05D002631 ORTHO05D002861 8.9e-15 85.1 242 32.2
RcHm_v2.0_Chr2g0175231 Rosa chinensis HOM05D002631 ORTHO05D002861 8.9e-15 85.1 225 30.7
Aqoxy5G03422 Aquilegia oxysepala HOM05D002631 ORTHO05D002861 1.2e-14 84.7 237 30.4
Cc07_g00670 Coffea canephora HOM05D002631 ORTHO05D002861 1.5e-14 84.3 231 32.5
Thecc.04G033600 Theobroma cacao HOM05D002631 ORTHO05D002861 1.5e-14 84.3 231 34.6
PGSC0003DMG400013426 Solanum tuberosum HOM05D002631 ORTHO05D002861 2.0e-14 84.0 207 32.9
FAN14G5847 Fragaria x ananassa HOM05D002631 ORTHO05D002861 2.6e-14 83.6 227 31.3
TWI75G1382 Tripterygium wilfordii HOM05D002631 ORTHO05D002861 2.6e-14 83.6 234 31.2
Duzib147G0551 Durio zibethinus HOM05D002631 ORTHO05D002861 3.4e-14 83.2 229 35.4
Duzib187G0830 Durio zibethinus HOM05D002631 ORTHO05D002861 4.4e-14 82.8 224 34.4
Oeu035217.1 Olea europaea HOM05D002631 ORTHO05D002861 4.4e-14 82.8 219 31.5
CiPaw.03G053800 Carya illinoinensis HOM05D002631 ORTHO05D002861 5.8e-14 82.4 225 30.2
Gohir.A01G154900 Gossypium hirsutum HOM05D002631 ORTHO05D002861 5.8e-14 82.4 211 33.6
Nitab4.5_0005161g0010 Nicotiana tabacum HOM05D002631 ORTHO05D002861 7.6e-14 82.0 219 32.4
Haze_12356 Corylus avellana HOM05D002631 ORTHO05D002861 9.9e-14 81.6 147 38.1
MD17G1013900 Malus domestica HOM05D002631 ORTHO05D002861 9.9e-14 81.6 229 30.1
Manes.17G104100 Manihot esculenta HOM05D002631 ORTHO05D002861 9.9e-14 81.6 219 32.9
Gohir.D01G155000 Gossypium hirsutum HOM05D002631 ORTHO05D002861 1.3e-13 81.3 211 33.2
Hma1.2p1_2105F.1_g314170 Hydrangea macrophylla HOM05D002631 ORTHO05D002861 1.3e-13 81.3 235 31.9
MBI07_g31942_MAGBIO Magnolia biondii HOM05D002631 ORTHO05D002861 1.7e-13 80.9 245 29.8
PGR102G0668 Punica granatum HOM05D002631 ORTHO05D002861 1.7e-13 80.9 210 32.9
Haze_14856 Corylus avellana HOM05D002631 ORTHO05D002861 2.2e-13 80.5 257 32.3
Solyc03g005030.3 Solanum lycopersicum HOM05D002631 ORTHO05D002861 2.2e-13 80.5 207 31.9
MSTRG.3083 Avicennia marina HOM05D002631 ORTHO05D002861 3.7e-13 79.7 235 31.5
Duzib268G1177 Durio zibethinus HOM05D002631 ORTHO05D002861 3.7e-13 79.7 225 35.1
Eucgr.B03472 Eucalyptus grandis HOM05D002631 ORTHO05D002861 3.7e-13 79.7 220 34.5
FAN05G0255 Fragaria x ananassa HOM05D002631 ORTHO05D002861 3.7e-13 79.7 227 31.3
MD09G1013200 Malus domestica HOM05D002631 ORTHO05D002861 3.7e-13 79.7 240 32.1
Actinidia05911 Actinidia chinensis HOM05D002631 ORTHO05D002861 8.4e-13 78.6 229 32.3
FvH4_6g53190 Fragaria vesca HOM05D002631 ORTHO05D002861 8.4e-13 78.6 181 34.3
FAN09G0528 Fragaria x ananassa HOM05D002631 ORTHO05D002861 1.4e-12 77.8 223 31.4
Gohir.D04G077800 Gossypium hirsutum HOM05D002631 ORTHO05D002861 2.4e-12 77.0 229 31.4
Gorai.012G087600 Gossypium raimondii HOM05D002631 ORTHO05D002861 2.4e-12 77.0 229 31.4
CiPaw.04G035400 Carya illinoinensis HOM05D002631 ORTHO05D002861 3.2e-12 76.6 239 30.5
Ca_04425_v3 Cicer arietinum L. HOM05D002631 ORTHO05D002861 3.2e-12 76.6 226 31.9
Manes.12G013100 Manihot esculenta HOM05D002631 ORTHO05D002861 4.1e-12 76.3 228 30.7
TWI56G0933 Tripterygium wilfordii HOM05D002631 ORTHO05D002861 4.1e-12 76.3 213 32.4
Oeu013645.3 Olea europaea HOM05D000172 ORTHO05D000781 5.4e-12 75.9 210 32.4
CAN.G1751.2 Capsicum annuum HOM05D002631 ORTHO05D002861 7.1e-12 75.5 212 32.1
Manes.15G159300 Manihot esculenta HOM05D002631 ORTHO05D002861 1.2e-11 74.7 233 30.9
MSTRG.24087 Avicennia marina HOM05D002631 ORTHO05D002861 1.6e-11 74.3 211 32.2
Lj2g0026031 Lotus japonicus HOM05D002631 ORTHO05D002861 1.6e-11 74.3 216 29.2
CANSAT64G0464 Cannabis sativa HOM05D002631 ORTHO05D002861 2.7e-11 73.6 238 29.8
FAN02G3740 Fragaria x ananassa HOM05D002631 ORTHO05D002861 3.5e-11 73.2 227 30.8
Glyma.05G076300 Glycine max HOM05D002631 ORTHO05D002861 3.5e-11 73.2 207 30.9
Cfa007243 Carpinus fangiana HOM05D002631 ORTHO05D002861 6.0e-11 72.4 235 30.2
Gohir.D09G035700 Gossypium hirsutum HOM05D002631 ORTHO05D002861 6.0e-11 72.4 231 32.5
Gorai.006G040600 Gossypium raimondii HOM05D002631 ORTHO05D002861 6.0e-11 72.4 231 32.5
TPR.G7520 Trifolium pratense HOM05D002631 ORTHO05D002861 6.0e-11 72.4 225 29.8
Medtr6g023580 Medicago truncatula HOM05D002631 ORTHO05D002861 7.8e-11 72.0 224 29.9
Sopen03g001040 Solanum pennellii HOM05D002631 ORTHO05D002861 7.8e-11 72.0 207 30.4
CiPaw.05G112100 Carya illinoinensis HOM05D002631 ORTHO05D002861 1.0e-10 71.6 218 32.6
Gorai.002G191900 Gossypium raimondii HOM05D002631 ORTHO05D002861 1.0e-10 71.6 145 36.6
TWI12G0788 Tripterygium wilfordii HOM05D002631 ORTHO05D002861 1.0e-10 71.6 215 33.5
Oeu011958.2 Olea europaea HOM05D002631 ORTHO05D002861 1.7e-10 70.9 240 30.4
SalBow4G0924 Salvia bowleyana HOM05D002631 ORTHO05D002861 2.3e-10 70.5 224 29.0
ClCG11G013790 Citrullus lanatus HOM05D002631 ORTHO05D002861 3.0e-10 70.1 215 29.8
Gohir.D07G234300 Gossypium hirsutum HOM05D002631 ORTHO05D002861 3.9e-10 69.7 227 32.2
SalBow4G2864 Salvia bowleyana HOM05D002631 ORTHO05D002861 3.9e-10 69.7 224 29.0
Gohir.A09G034900 Gossypium hirsutum HOM05D002631 ORTHO05D002861 5.1e-10 69.3 231 32.0
Lj1g0010837 Lotus japonicus HOM05D002631 ORTHO05D002861 5.1e-10 69.3 221 31.2
Psat1g085600 Pisum sativum HOM05D002631 ORTHO05D002861 6.6e-10 68.9 225 28.9
VMungo0464G1570 Vigna mungo HOM05D002631 ORTHO05D002861 6.6e-10 68.9 209 30.1
GSVIVG01001809001 Vitis vinifera HOM05D002631 ORTHO05D002861 6.6e-10 68.9 135 33.3
Migut.K01455 Erythranthe guttata HOM05D002631 ORTHO05D002861 8.6e-10 68.6 220 28.2
Medtr7g029620 Medicago truncatula HOM05D002631 ORTHO05D002861 8.6e-10 68.6 165 33.3
QL03p054083 Quercus lobata HOM05D002631 ORTHO05D002861 8.6e-10 68.6 164 34.1
Rhsim08G0043900 Rhododendron simsii HOM05D002631 ORTHO05D002861 8.6e-10 68.6 164 34.8
Rhsim10G0007400 Rhododendron simsii HOM05D002631 ORTHO05D002861 1.1e-09 68.2 238 27.7
Glyma.19G074200 Glycine max HOM05D002631 ORTHO05D002861 1.5e-09 67.8 218 31.2
Gohir.A07G227200 Gossypium hirsutum HOM05D002631 ORTHO05D002861 1.5e-09 67.8 227 31.3
Gorai.001G269900 Gossypium raimondii HOM05D002631 ORTHO05D002861 1.5e-09 67.8 233 29.6
QL02p071781 Quercus lobata HOM05D002631 ORTHO05D002861 1.5e-09 67.8 192 30.2
vmacro18333 Vaccinium macrocarpon HOM05D002631 ORTHO05D002861 1.5e-09 67.8 161 32.9
Gohir.A05G339300 Gossypium hirsutum HOM05D002631 ORTHO05D002861 2.5e-09 67.0 229 29.7
A03p32300 Brassica napus HOM05D002631 ORTHO05D002861 3.3e-09 66.6 211 28.4
Ciclev10016522m.g Citrus clementina HOM05D002631 ORTHO05D002861 3.3e-09 66.6 233 32.6
BraA03t12400Z Brassica rapa HOM05D002631 ORTHO05D002861 4.3e-09 66.2 211 28.4
CsaV3_5G030380 Cucumis sativus L. HOM05D002631 ORTHO05D002861 4.3e-09 66.2 215 28.8
Potri.001G332500 Populus trichocarpa HOM05D002631 ORTHO05D002861 4.3e-09 66.2 169 33.7
TAR371G0695 Trochodendron aralioides HOM05D002631 ORTHO05D002861 4.3e-09 66.2 135 41.5
C03p39350 Brassica napus HOM05D002631 ORTHO05D002861 5.6e-09 65.9 205 28.8
MBI07_g46198_MAGBIO Magnolia biondii HOM05D002631 ORTHO05D002861 7.3e-09 65.5 214 29.0
Phvul.004G055100 Phaseolus vulgaris HOM05D002631 ORTHO05D002861 7.3e-09 65.5 212 28.8
MELO3C011878.2 Cucumis melo HOM05D002631 ORTHO05D002861 9.6e-09 65.1 215 27.4
QL03p053810 Quercus lobata HOM05D002631 ORTHO05D002861 9.6e-09 65.1 170 32.9
MELO3C014870.2 Cucumis melo HOM05D002631 ORTHO05D002861 1.6e-08 64.3 223 30.0
MSTRG.15564 Avicennia marina HOM05D002631 ORTHO05D002861 2.8e-08 63.5 234 27.8
PSO478G2931 Papaver somniferum HOM05D002631 ORTHO05D002861 2.8e-08 63.5 253 27.7
ClCG05G013370 Citrullus lanatus HOM05D002631 ORTHO05D002861 3.6e-08 63.2 221 29.9
Lalb_Chr21g0317531 Lupinus albus HOM05D002631 ORTHO05D002861 3.6e-08 63.2 226 29.2
Gohir.A12G148400 Gossypium hirsutum HOM05D032798 ORTHO05D036333 6.2e-08 62.4 182 33.0
Hma1.2p1_1278F.1_g272420 Hydrangea macrophylla HOM05D002631 ORTHO05D002861 6.2e-08 62.4 166 32.5
THA.LOC104825613 Tarenaya hassleriana HOM05D002631 ORTHO05D002861 6.2e-08 62.4 145 35.9
unitig_21.g20478 Utricularia gibba HOM05D001287 ORTHO05D001226 6.2e-08 62.4 215 27.9
HanXRQChr17g0550131 Helianthus annuus HOM05D002631 ORTHO05D002861 8.1e-08 62.0 143 35.7
Actinidia36186 Actinidia chinensis HOM05D002631 ORTHO05D002861 1.8e-07 60.8 230 30.0
SGA_v2.0_scaffold154G37166 Striga asiatica HOM05D002631 ORTHO05D002861 1.8e-07 60.8 172 29.1
TPR.G38258 Trifolium pratense HOM05D002631 ORTHO05D002861 1.8e-07 60.8 153 30.1
arahy.Tifrunner.gnm1.ann1.Q8Q4RG Arachis hypogaea HOM05D002631 ORTHO05D002861 2.4e-07 60.5 152 34.2
CDE05G2656 Ceratophyllum demersum HOM05D002631 ORTHO05D002861 2.4e-07 60.5 226 27.9
CDE05G3573 Ceratophyllum demersum HOM05D002631 ORTHO05D002861 3.1e-07 60.1 228 27.6
PGR142G2012 Punica granatum HOM05D002631 ORTHO05D002861 3.1e-07 60.1 166 31.9
Phvul.001G095300 Phaseolus vulgaris HOM05D002631 ORTHO05D002861 4.0e-07 59.7 165 33.3
Sabra16G0213400 Salix brachista HOM05D002631 ORTHO05D002861 5.2e-07 59.3 169 32.5
Lj7A608T54 Lonicera japonica HOM05D002631 ORTHO05D002861 6.8e-07 58.9 167 31.7
Glyma.16G058500 Glycine max HOM05D002631 ORTHO05D002861 8.9e-07 58.5 157 32.5
Sed0001821 Sechium edule HOM05D002631 ORTHO05D002861 8.9e-07 58.5 221 27.1
Psat7g264080 Pisum sativum HOM05D002631 ORTHO05D002861 1.2e-06 58.2 205 29.3
Carub.0003s0021 Capsella rubella HOM05D002631 ORTHO05D002861 1.5e-06 57.8 165 30.3
Eucgr.I01656 Eucalyptus grandis HOM05D002631 ORTHO05D002861 1.5e-06 57.8 231 29.4
Glyma.19G088700 Glycine max HOM05D002631 ORTHO05D002861 2.0e-06 57.4 162 30.2
Lsat_1_v5_gn_2_94100 Lactuca sativa HOM05D002631 ORTHO05D002861 2.0e-06 57.4 144 31.9
PSO017G1183 Papaver somniferum HOM05D002631 ORTHO05D002861 2.0e-06 57.4 237 25.7
CAN.G473.87 Capsicum annuum HOM05D002631 ORTHO05D002861 4.4e-06 56.2 228 27.2
VMungo1383G3513 Vigna mungo HOM05D002631 ORTHO05D002861 4.4e-06 56.2 165 33.9
Zm00001eb364520 Zea mays HOM05D002631 ORTHO05D002861 4.4e-06 56.2 159 33.3
PGR083G1199 Punica granatum HOM05D002631 ORTHO05D002861 5.8e-06 55.8 98 38.8
AL3G10270 Arabidopsis lyrata HOM05D002631 ORTHO05D002861 9.9e-06 55.1 207 28.0


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