Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0945 Fragaria x ananassa HOM05D005221 ORTHO05D006355 2.8e-141 505.4 270 100.0
FAN12G4146 Fragaria x ananassa HOM05D005221 ORTHO05D006355 4.9e-122 441.4 241 98.3
FAN07G2107 Fragaria x ananassa HOM05D005221 ORTHO05D006355 7.1e-121 437.6 241 97.1
FvH4_4g15060 Fragaria vesca HOM05D005221 ORTHO05D006355 1.6e-120 436.4 242 97.5
RcHm_v2.0_Chr4g0416801 Rosa chinensis HOM05D005221 ORTHO05D006355 1.2e-112 410.2 241 92.5
FAN17G2349 Fragaria x ananassa HOM05D005221 ORTHO05D006355 2.1e-96 356.3 240 79.2
MD16G1188800 Malus domestica HOM05D005221 ORTHO05D006355 4.5e-91 338.6 241 78.8
Prupe.1G155500 Prunus persica HOM05D005221 ORTHO05D006355 1.0e-90 337.4 241 78.0
QL06p003360 Quercus lobata HOM05D005221 ORTHO05D006355 8.7e-87 324.3 242 77.3
MD13G1188400 Malus domestica HOM05D005221 ORTHO05D006355 3.8e-82 308.9 241 71.4
Duzib151G0158 Durio zibethinus HOM05D005221 ORTHO05D006355 1.6e-80 303.5 247 69.6
Manes.03G181200 Manihot esculenta HOM05D005221 ORTHO05D006355 6.1e-80 301.6 241 71.0
Thecc.04G227300 Theobroma cacao HOM05D005221 ORTHO05D006355 1.0e-79 300.8 243 72.0
Cpa.g.sc8.322 Carica papaya HOM05D005221 ORTHO05D006355 8.8e-79 297.7 248 68.5
TWI53G0458 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 3.3e-78 295.8 241 69.3
Duzib212G0790 Durio zibethinus HOM05D005221 ORTHO05D006355 6.3e-77 291.6 244 71.3
Cc03_g03470 Coffea canephora HOM05D005221 ORTHO05D006355 1.5e-75 287.0 242 66.1
Potri.010G090700 Populus trichocarpa HOM05D005221 ORTHO05D006355 3.4e-75 285.8 242 71.5
Cfa015617 Carpinus fangiana HOM05D005221 ORTHO05D006355 2.9e-74 282.7 241 68.5
Potri.008G150300 Populus trichocarpa HOM05D005221 ORTHO05D006355 5.0e-74 282.0 241 68.5
CSS0023930 Camellia sinensis var. sinensis HOM05D005221 ORTHO05D006355 1.4e-73 280.4 241 68.0
Oeu037551.1 Olea europaea HOM05D005221 ORTHO05D006355 2.5e-73 279.6 241 64.3
Sabra10G0052800 Salix brachista HOM05D005221 ORTHO05D006355 3.2e-73 279.3 245 68.2
COL.COLO4_06196 Corchorus olitorius HOM05D005221 ORTHO05D006355 1.4e-71 273.9 256 66.0
TWI09G0254 Tripterygium wilfordii HOM05D005221 ORTHO05D006355 1.8e-71 273.5 241 64.7
Duzib052G0196 Durio zibethinus HOM05D005221 ORTHO05D006355 1.1e-70 270.8 247 60.3
TAR362G0899 Trochodendron aralioides HOM05D005221 ORTHO05D006355 7.4e-70 268.1 244 62.3
Ca_10924_v3 Cicer arietinum L. HOM05D005221 ORTHO05D006355 3.7e-69 265.8 263 65.4
CiPaw.01G163700 Carya illinoinensis HOM05D005221 ORTHO05D006355 8.2e-69 264.6 222 71.6
CiPaw.02G095300 Carya illinoinensis HOM05D005221 ORTHO05D006355 1.4e-68 263.8 243 67.1
Sabra08G0114400 Salix brachista HOM05D005221 ORTHO05D006355 1.8e-68 263.5 241 66.0
Sed0012211 Sechium edule HOM05D005221 ORTHO05D006355 1.8e-68 263.5 248 64.1
Lj5g0028012 Lotus japonicus HOM05D005221 ORTHO05D006355 2.4e-68 263.1 252 65.1
Manes.15G026700 Manihot esculenta HOM05D005221 ORTHO05D006355 4.1e-68 262.3 246 63.8
Glyma.10G249900 Glycine max HOM05D005221 ORTHO05D006355 1.2e-67 260.8 257 59.9
MSTRG.21844 Avicennia marina HOM05D005221 ORTHO05D006355 7.7e-67 258.1 244 63.5
Glyma.20G143700 Glycine max HOM05D005221 ORTHO05D006355 1.3e-66 257.3 254 61.8
Sed0008919 Sechium edule HOM05D005221 ORTHO05D006355 1.3e-66 257.3 246 63.8
Nn4g26263 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.7e-66 256.9 233 63.5
Peaxi162Scf00437g00052 Petunia axillaris HOM05D005221 ORTHO05D006355 1.7e-66 256.9 241 61.0
Aqoxy2G03348 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 2.2e-66 256.5 244 62.7
Nn1g02242 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.5e-65 253.8 261 62.5
TPR.G5529 Trifolium pratense HOM05D005221 ORTHO05D006355 4.2e-65 252.3 256 59.8
MELO3C014491.2 Cucumis melo HOM05D005221 ORTHO05D006355 9.4e-65 251.1 236 65.7
Medtr1g104840 Medicago truncatula HOM05D005221 ORTHO05D006355 1.2e-64 250.8 249 63.9
VMungo0720G0147 Vigna mungo HOM05D005221 ORTHO05D006355 1.6e-64 250.4 253 60.1
ClCG06G006000 Citrullus lanatus HOM05D005221 ORTHO05D006355 4.7e-64 248.8 230 66.1
Ciclev10005615m.g Citrus clementina HOM05D005221 ORTHO05D006355 6.1e-64 248.4 271 60.9
CANSAT78G1299 Cannabis sativa HOM05D005221 ORTHO05D006355 8.0e-64 248.1 284 58.1
Actinidia23488 Actinidia chinensis HOM05D005221 ORTHO05D006355 1.8e-63 246.9 246 60.6
Nitab4.5_0000260g0100 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.8e-63 246.9 241 61.8
Nitab4.5_0001545g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 1.8e-63 246.9 241 61.0
Phvul.007G054700 Phaseolus vulgaris HOM05D005221 ORTHO05D006355 1.1e-62 244.2 254 59.8
Peaxi162Scf00642g00022 Petunia axillaris HOM05D005221 ORTHO05D006355 3.3e-62 242.7 245 60.8
CAN.G668.8 Capsicum annuum HOM05D005221 ORTHO05D006355 1.3e-61 240.7 242 59.9
Rhsim04G0205100 Rhododendron simsii HOM05D005221 ORTHO05D006355 9.1e-60 234.6 246 58.5
CsaV3_6G038280 Cucumis sativus L. HOM05D005221 ORTHO05D006355 1.6e-59 233.8 235 60.9
Gohir.A09G214300 Gossypium hirsutum HOM05D005221 ORTHO05D006355 1.0e-58 231.1 251 59.4
Gohir.D09G216800 Gossypium hirsutum HOM05D005221 ORTHO05D006355 2.2e-58 229.9 251 58.2
DCAR_030618 Daucus carota HOM05D005221 ORTHO05D006355 8.5e-58 228.0 243 58.4
Gorai.006G237300 Gossypium raimondii HOM05D005221 ORTHO05D006355 1.1e-57 227.6 251 57.8
Nitab4.5_0000321g0080 Nicotiana tabacum HOM05D005221 ORTHO05D006355 2.7e-56 223.0 243 56.4
Sc13g0004240 Simmondsia chinensis HOM05D005221 ORTHO05D006355 2.7e-56 223.0 267 55.4
Sopen09g030550 Solanum pennellii HOM05D005221 ORTHO05D006355 4.7e-56 222.2 239 57.3
EL10As3g23360 Beta vulgaris HOM05D005221 ORTHO05D006355 6.1e-56 221.9 262 55.3
Dinv38425 Davidia involucrata HOM05D005221 ORTHO05D006355 8.0e-56 221.5 169 75.1
PGSC0003DMG400031851 Solanum tuberosum HOM05D005221 ORTHO05D006355 8.0e-56 221.5 228 57.0
CAN.G873.5 Capsicum annuum HOM05D005221 ORTHO05D006355 4.0e-55 219.2 244 53.7
Solyc09g075740.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 4.0e-55 219.2 239 55.6
DCAR_002395 Daucus carota HOM05D005221 ORTHO05D006355 5.2e-55 218.8 244 57.0
Sc19g0004310 Simmondsia chinensis HOM05D005221 ORTHO05D006355 5.2e-55 218.8 260 56.5
TAR636G2071 Trochodendron aralioides HOM05D002203 ORTHO05D002647 6.8e-55 218.4 241 57.7
ECA234G2268 Erigeron canadensis HOM05D005221 ORTHO05D006355 8.8e-55 218.0 247 53.0
PGSC0003DMG400011822 Solanum tuberosum HOM05D005221 ORTHO05D006355 8.8e-55 218.0 244 55.3
Solyc06g054280.1 Solanum lycopersicum HOM05D005221 ORTHO05D006355 1.5e-54 217.2 244 55.3
Sopen06g019400 Solanum pennellii HOM05D005221 ORTHO05D006355 4.4e-54 215.7 246 55.3
Lj3P740T18 Lonicera japonica HOM05D005221 ORTHO05D006355 1.3e-53 214.2 245 55.1
Lalb_Chr06g0160581 Lupinus albus HOM05D005221 ORTHO05D006355 1.2e-51 207.6 249 57.4
Eucgr.B01092 Eucalyptus grandis HOM05D005221 ORTHO05D006355 1.6e-51 207.2 268 51.5
THA.LOC104802759 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 1.7e-50 203.8 238 57.1
DCAR_024599 Daucus carota HOM05D005221 ORTHO05D006355 1.5e-49 200.7 241 49.0
Migut.N00171 Erythranthe guttata HOM05D005221 ORTHO05D006355 4.2e-49 199.1 259 51.0
PGR142G0441 Punica granatum HOM05D005221 ORTHO05D006355 7.2e-49 198.4 283 51.6
Hma1.2p1_0511F.1_g168910 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 8.0e-48 194.9 236 54.2
Oeu029026.1 Olea europaea HOM05D005221 ORTHO05D006355 8.0e-48 194.9 169 59.8
SGA_v2.0_scaffold10G05107 Striga asiatica HOM05D005221 ORTHO05D006355 4.0e-47 192.6 248 53.2
Lsat_1_v5_gn_5_148500 Lactuca sativa HOM05D005221 ORTHO05D006355 6.8e-47 191.8 244 53.7
Carub.0003s0539 Capsella rubella HOM05D005221 ORTHO05D006355 1.2e-46 191.0 245 50.6
HanXRQChr04g0110301 Helianthus annuus HOM05D005221 ORTHO05D006355 1.7e-45 187.2 222 55.0
HanXRQChr10g0296561 Helianthus annuus HOM05D005221 ORTHO05D006355 3.7e-45 186.0 244 52.5
Aqoxy5G00503 Aquilegia oxysepala HOM05D005221 ORTHO05D006355 6.3e-45 185.3 247 53.4
Aa31LG5G16450 Aethionema arabicum HOM05D005221 ORTHO05D006355 5.4e-44 182.2 227 54.6
AL3G16790 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 1.2e-43 181.0 248 47.2
THA.LOC104818779 Tarenaya hassleriana HOM05D005221 ORTHO05D006355 2.0e-43 180.3 247 49.0
MBI17_g31753_MAGBIO Magnolia biondii HOM05D005221 ORTHO05D006355 2.7e-43 179.9 239 46.9
AT3G05980 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 5.9e-43 178.7 248 45.2
MSTRG.4014 Avicennia marina HOM05D005221 ORTHO05D006355 1.7e-42 177.2 240 47.9
BolC3t13571H Brassica oleracea HOM05D005221 ORTHO05D006355 2.3e-42 176.8 235 54.0
BraA05t22925Z Brassica rapa HOM05D005221 ORTHO05D006355 2.3e-42 176.8 241 47.7
BcaC05g30072 Brassica carinata HOM05D005221 ORTHO05D006355 6.6e-42 175.3 245 46.5
A05p42050 Brassica napus HOM05D005221 ORTHO05D006355 8.6e-42 174.9 241 47.3
C05p61280 Brassica napus HOM05D005221 ORTHO05D006355 1.5e-41 174.1 245 48.6
BolC5t34787H Brassica oleracea HOM05D005221 ORTHO05D006355 1.5e-41 174.1 245 48.6
BraA03t10262Z Brassica rapa HOM05D005221 ORTHO05D006355 4.2e-41 172.6 243 52.3
Atru.chr4.2515 Acer truncatum HOM05D005221 ORTHO05D006355 5.6e-41 172.2 251 46.6
Thhalv10021379m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 5.6e-41 172.2 256 49.6
CARHR080490 Cardamine hirsuta HOM05D005221 ORTHO05D006355 9.5e-41 171.4 255 50.2
Nitab4.5_0007609g0020 Nicotiana tabacum HOM05D005221 ORTHO05D006355 9.5e-41 171.4 213 52.6
PGR004G1499 Punica granatum HOM05D005221 ORTHO05D006355 1.2e-40 171.0 284 43.3
Sp3g04920 Schrenkiella parvula HOM05D005221 ORTHO05D006355 8.0e-40 168.3 255 49.8
C03p11020 Brassica napus HOM05D005221 ORTHO05D006355 1.8e-39 167.2 243 51.9
BcaB01g05141 Brassica carinata HOM05D005221 ORTHO05D006355 3.0e-39 166.4 234 53.0
BolC9t58548H Brassica oleracea HOM05D005221 ORTHO05D006355 3.4e-38 162.9 247 49.8
A03p09440 Brassica napus HOM05D005221 ORTHO05D006355 4.4e-38 162.5 244 50.0
BraA01t04457Z Brassica rapa HOM05D005221 ORTHO05D006355 5.7e-38 162.2 250 43.6
BcaB01g04866 Brassica carinata HOM05D005221 ORTHO05D006355 1.7e-37 160.6 257 47.9
Thhalv10016073m.g Eutrema salsugineum HOM05D005221 ORTHO05D006355 1.7e-37 160.6 240 50.0
A10p20340 Brassica napus HOM05D005221 ORTHO05D006355 6.4e-37 158.7 253 48.6
BraA10t44105Z Brassica rapa HOM05D005221 ORTHO05D006355 6.4e-37 158.7 253 48.6
BcaC04g18576 Brassica carinata HOM05D005221 ORTHO05D006355 5.4e-36 155.6 255 47.8
C09p56940 Brassica napus HOM05D005221 ORTHO05D006355 5.4e-36 155.6 255 47.8
BcaC09g47869 Brassica carinata HOM05D005221 ORTHO05D006355 1.6e-35 154.1 235 43.0
Lj6P597T84 Lonicera japonica HOM05D005221 ORTHO05D006355 3.5e-35 152.9 170 56.5
AT5G19340 Arabidopsis thaliana HOM05D005221 ORTHO05D006355 4.6e-35 152.5 270 46.3
BolC1t05645H Brassica oleracea HOM05D005221 ORTHO05D006355 4.6e-35 152.5 237 42.6
Carub.0006s1768 Capsella rubella HOM05D005221 ORTHO05D006355 2.3e-34 150.2 252 45.6
Hma1.2p1_0995F.1_g245620 Hydrangea macrophylla HOM05D005221 ORTHO05D006355 8.6e-34 148.3 160 49.4
Ah.04g154490 Amaranthus hybridus HOM05D005221 ORTHO05D006355 9.5e-33 144.8 206 50.5
arahy.Tifrunner.gnm1.ann1.0RM5BV Arachis hypogaea HOM05D005221 ORTHO05D006355 6.2e-32 142.1 253 43.9
Sp6g25070 Schrenkiella parvula HOM05D005221 ORTHO05D006355 1.5e-30 137.5 244 46.3
CARHR193620 Cardamine hirsuta HOM05D005221 ORTHO05D006355 3.4e-30 136.3 273 43.2
AL6G30830 Arabidopsis lyrata HOM05D005221 ORTHO05D006355 4.4e-30 136.0 249 43.4
PSO302G0248 Papaver somniferum HOM05D005221 ORTHO05D006355 3.7e-29 132.9 160 50.6
BcaB08g36581 Brassica carinata HOM05D005221 ORTHO05D006355 1.4e-28 131.0 244 45.1
BcaNung07026 Brassica carinata HOM05D005221 ORTHO05D006355 2.3e-26 123.6 166 45.8
SGA_v2.0_scaffold237G43792 Striga asiatica HOM05D005221 ORTHO05D006355 2.5e-25 120.2 243 36.2
SGA_v2.0_scaffold39G15291 Striga asiatica HOM05D005221 ORTHO05D006355 3.6e-24 116.3 249 39.4
Nn5g28878 Nelumbo nucifera HOM05D005221 ORTHO05D006355 1.4e-20 104.4 106 53.8
Nn3g20708 Nelumbo nucifera HOM05D005221 ORTHO05D006355 6.0e-19 99.0 98 53.1
AUR62038640 Chenopodium quinoa HOM05D005221 ORTHO05D006355 3.9e-18 96.3 153 41.8
Psat6g208720 Pisum sativum HOM05D005221 ORTHO05D006355 6.6e-18 95.5 88 73.9
AUR62038093 Chenopodium quinoa HOM05D005221 ORTHO05D006355 9.2e-12 75.1 150 35.3
ATR0626G396 Amborella trichopoda HOM05D005221 ORTHO05D006355 1.3e-10 71.2 151 37.1
Nn1g04890 Nelumbo nucifera HOM05D002458 ORTHO05D002603 1.1e-09 68.2 132 36.4
Nitab4.5_0000728g0040 Nicotiana tabacum HOM05D002458 ORTHO05D002603 1.9e-09 67.4 138 35.5
Manes.12G102900 Manihot esculenta HOM05D002458 ORTHO05D002603 4.3e-09 66.2 151 32.5
Nitab4.5_0005062g0030 Nicotiana tabacum HOM05D002458 ORTHO05D002603 7.3e-09 65.5 133 37.6
Actinidia16500 Actinidia chinensis HOM05D002458 ORTHO05D002603 1.6e-08 64.3 136 36.0
CiPaw.01G019100 Carya illinoinensis HOM05D002458 ORTHO05D002603 2.8e-08 63.5 135 36.3
TAR628G0915 Trochodendron aralioides HOM05D002458 ORTHO05D002603 2.8e-08 63.5 151 33.8
Nn1g06084 Nelumbo nucifera HOM05D005221 ORTHO05D006355 3.6e-08 63.2 51 62.7
Potri.007G042600 Populus trichocarpa HOM05D002458 ORTHO05D002603 3.6e-08 63.2 151 31.1
MBI06_g24647_MAGBIO Magnolia biondii HOM05D002458 ORTHO05D002603 4.7e-08 62.8 154 33.1
Solyc02g065020.2 Solanum lycopersicum HOM05D002458 ORTHO05D002603 8.1e-08 62.0 133 36.1
Nn5g30245 Nelumbo nucifera HOM05D002458 ORTHO05D002603 1.8e-07 60.8 151 33.1
CSS0037574 Camellia sinensis var. sinensis HOM05D002458 ORTHO05D002603 2.4e-07 60.5 132 36.4
Sopen02g015150 Solanum pennellii HOM05D002458 ORTHO05D002603 2.4e-07 60.5 132 35.6
THA.LOC104826982 Tarenaya hassleriana HOM05D002458 ORTHO05D002603 2.4e-07 60.5 107 35.5
Manes.13G127400 Manihot esculenta HOM05D002458 ORTHO05D002603 3.1e-07 60.1 156 32.7
Aqoxy5G01250 Aquilegia oxysepala HOM05D002458 ORTHO05D002603 5.2e-07 59.3 151 33.1
Psat4g087040 Pisum sativum HOM05D002458 ORTHO05D002603 5.2e-07 59.3 139 35.3
THA.LOC104819222 Tarenaya hassleriana HOM05D002458 ORTHO05D002603 5.2e-07 59.3 139 33.1
Sopen02g035350 Solanum pennellii HOM05D002458 ORTHO05D002603 6.8e-07 58.9 134 34.3
Solyc02g090720.3 Solanum lycopersicum HOM05D002458 ORTHO05D002603 1.5e-06 57.8 159 32.1
PGSC0003DMG400025476 Solanum tuberosum HOM05D002458 ORTHO05D002603 2.0e-06 57.4 134 35.1
Dinv29979 Davidia involucrata HOM05D002458 ORTHO05D002603 3.4e-06 56.6 133 34.6
Oeu004830.1 Olea europaea HOM05D002458 ORTHO05D002603 3.4e-06 56.6 137 33.6
Sed0017415 Sechium edule HOM05D002458 ORTHO05D002603 3.4e-06 56.6 107 33.6
MSTRG.23756 Avicennia marina HOM05D002458 ORTHO05D002603 4.4e-06 56.2 136 32.4
ClCG02G012800 Citrullus lanatus HOM05D002458 ORTHO05D002603 4.4e-06 56.2 154 33.1
Duzib187G0864 Durio zibethinus HOM05D002458 ORTHO05D002603 4.4e-06 56.2 132 31.8
THA.LOC104821274 Tarenaya hassleriana HOM05D002458 ORTHO05D002603 4.4e-06 56.2 96 38.5
TAR376G0738 Trochodendron aralioides HOM05D002458 ORTHO05D002603 4.4e-06 56.2 152 31.6
Aa31LG1G15350 Aethionema arabicum HOM05D002458 ORTHO05D002603 5.8e-06 55.8 135 34.8
SGA_v2.0_scaffold204G41574 Striga asiatica HOM05D002458 ORTHO05D002603 5.8e-06 55.8 136 33.1
CAN.G165.22 Capsicum annuum HOM05D002458 ORTHO05D002603 7.6e-06 55.5 132 32.6
Thecc.01G054400 Theobroma cacao HOM05D002458 ORTHO05D002603 7.6e-06 55.5 132 31.1
ATR1098G156 Amborella trichopoda HOM05D003370 ORTHO05D003848 9.9e-06 55.1 133 34.6
Duzib147G0558 Durio zibethinus HOM05D002458 ORTHO05D002603 9.9e-06 55.1 132 31.1
Sabra07G0037800 Salix brachista HOM05D002458 ORTHO05D002603 9.9e-06 55.1 152 30.3
PGSC0003DMG400015780 Solanum tuberosum HOM05D002458 ORTHO05D002603 9.9e-06 55.1 135 36.3


User provided reference genes

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