Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0931 Fragaria x ananassa HOM05D005895 ORTHO05D007916 0.0e+00 1224.9 614 100.0
FAN17G0264 Fragaria x ananassa HOM05D005895 ORTHO05D007916 0.0e+00 1149.0 616 95.1
FAN07G1086 Fragaria x ananassa HOM05D005895 ORTHO05D007916 0.0e+00 1088.6 616 91.2
FvH4_4g25910 Fragaria vesca HOM05D005895 ORTHO05D007916 0.0e+00 1085.5 616 90.9
FAN12G1268 Fragaria x ananassa HOM05D005895 ORTHO05D007916 6.3e-311 1070.1 616 90.1
FAN12G2739 Fragaria x ananassa HOM05D005895 ORTHO05D007916 2.1e-309 1065.1 618 89.2
RcHm_v2.0_Chr4g0433361 Rosa chinensis HOM05D005895 ORTHO05D007916 6.9e-289 996.9 628 83.6
Prupe.1G247400 Prunus persica HOM05D005895 ORTHO05D007916 9.7e-259 896.7 628 76.6
MD13G1098000 Malus domestica HOM05D005895 ORTHO05D007916 1.4e-254 882.9 628 74.0
MD16G1098900 Malus domestica HOM05D005895 ORTHO05D007916 2.4e-249 865.5 631 71.6
Haze_12237 Corylus avellana HOM05D005895 ORTHO05D007916 5.5e-246 854.4 630 71.6
Cfa009199 Carpinus fangiana HOM05D005895 ORTHO05D007916 4.0e-244 848.2 630 71.0
Thecc.02G257400 Theobroma cacao HOM05D005895 ORTHO05D007916 3.7e-242 841.6 577 74.7
Potri.010G044900 Populus trichocarpa HOM05D005895 ORTHO05D007916 4.5e-240 834.7 623 71.3
Gohir.A04G136400 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.0e-239 833.6 627 69.2
Gorai.012G172600 Gossypium raimondii HOM05D005895 ORTHO05D007916 1.3e-239 833.2 627 69.2
CANSAT01G2589 Cannabis sativa HOM05D005895 ORTHO05D007916 1.1e-238 830.1 634 69.4
QL03p058522 Quercus lobata HOM05D005895 ORTHO05D007916 5.5e-238 827.8 625 70.4
CiPaw.05G183400 Carya illinoinensis HOM05D005895 ORTHO05D007916 2.7e-237 825.5 621 68.9
COL.COLO4_24246 Corchorus olitorius HOM05D005895 ORTHO05D007916 3.6e-237 825.1 577 73.3
Atru.chr11.2133 Acer truncatum HOM05D005895 ORTHO05D007916 1.5e-235 819.7 631 69.6
Sabra10G0023200 Salix brachista HOM05D005895 ORTHO05D007916 3.4e-235 818.5 647 67.9
TPR.G34672 Trifolium pratense HOM05D005895 ORTHO05D007916 4.4e-235 818.1 627 69.7
GSVIVG01004086001 Vitis vinifera HOM05D005895 ORTHO05D007916 9.8e-235 817.0 629 68.0
Actinidia27801 Actinidia chinensis HOM05D005895 ORTHO05D007916 1.3e-234 816.6 628 68.8
Cpa.g.sc33.4 Carica papaya HOM05D005895 ORTHO05D007916 3.7e-234 815.1 571 74.1
TAR371G0306 Trochodendron aralioides HOM05D005895 ORTHO05D007916 3.7e-234 815.1 571 72.9
MELO3C011963.2 Cucumis melo HOM05D005895 ORTHO05D007916 6.3e-234 814.3 575 72.7
Atru.chr11.2117 Acer truncatum HOM05D005895 ORTHO05D007916 1.1e-233 813.5 631 69.1
Ciclev10030909m.g Citrus clementina HOM05D005895 ORTHO05D007916 3.1e-233 812.0 630 69.0
Solyc04g025540.3 Solanum lycopersicum HOM05D005895 ORTHO05D007916 3.1e-233 812.0 628 67.0
CSS0018548 Camellia sinensis var. sinensis HOM05D005895 ORTHO05D007916 9.1e-233 810.4 633 68.2
Eucgr.H02516 Eucalyptus grandis HOM05D005895 ORTHO05D007916 1.6e-232 809.7 626 68.2
Gohir.D04G179500 Gossypium hirsutum HOM05D005895 ORTHO05D007916 4.5e-232 808.1 610 69.3
TWI36G0590 Tripterygium wilfordii HOM05D005895 ORTHO05D007916 1.3e-231 806.6 628 69.4
PGR119G2505 Punica granatum HOM05D005895 ORTHO05D007916 1.7e-231 806.2 578 71.6
MBI10_g00734_MAGBIO Magnolia biondii HOM05D005895 ORTHO05D007916 2.9e-231 805.4 629 67.7
Medtr8g069525 Medicago truncatula HOM05D005895 ORTHO05D007916 6.6e-231 804.3 626 69.0
Sopen04g012770 Solanum pennellii HOM05D005895 ORTHO05D007916 6.6e-231 804.3 622 67.5
BcaB05g24593 Brassica carinata HOM05D005895 ORTHO05D007916 2.5e-230 802.4 637 67.2
Lj6A811T72 Lonicera japonica HOM05D005895 ORTHO05D007916 2.5e-230 802.4 574 71.4
Sp5g25720 Schrenkiella parvula HOM05D005895 ORTHO05D007916 2.5e-230 802.4 576 71.5
CsaV3_5G031240 Cucumis sativus L. HOM05D005895 ORTHO05D007916 3.3e-230 802.0 575 71.5
CAN.G7.20 Capsicum annuum HOM05D005895 ORTHO05D007916 4.2e-230 801.6 581 70.4
arahy.Tifrunner.gnm1.ann1.LQ91H7 Arachis hypogaea HOM05D005895 ORTHO05D007916 9.5e-230 800.4 624 67.9
Glyma.08G283100 Glycine max HOM05D005895 ORTHO05D007916 6.1e-229 797.7 620 67.6
DCAR_007061 Daucus carota HOM05D005895 ORTHO05D007916 1.4e-228 796.6 576 70.7
Gorai.005G179700 Gossypium raimondii HOM05D005895 ORTHO05D007916 1.4e-228 796.6 570 71.8
THA.LOC104822982 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 1.4e-228 796.6 577 71.4
Lalb_Chr05g0228401 Lupinus albus HOM05D005895 ORTHO05D007916 8.9e-228 793.9 619 68.5
Thhalv10018314m.g Eutrema salsugineum HOM05D005895 ORTHO05D007916 1.5e-227 793.1 635 66.6
A02p16660 Brassica napus HOM05D005895 ORTHO05D007916 3.4e-227 792.0 631 66.6
C02p27920 Brassica napus HOM05D005895 ORTHO05D007916 4.4e-227 791.6 638 66.5
BolC2t08837H Brassica oleracea HOM05D005895 ORTHO05D007916 4.4e-227 791.6 638 66.5
BraA02t06722Z Brassica rapa HOM05D005895 ORTHO05D007916 5.7e-227 791.2 631 66.6
Sed0023548 Sechium edule HOM05D005895 ORTHO05D007916 5.7e-227 791.2 627 67.6
Carub.0002s1729 Capsella rubella HOM05D005895 ORTHO05D007916 9.8e-227 790.4 634 65.8
AT1G70570 Arabidopsis thaliana HOM05D005895 ORTHO05D007916 1.3e-226 790.0 634 66.1
AL2G29960 Arabidopsis lyrata HOM05D005895 ORTHO05D007916 2.2e-226 789.3 579 70.3
Aa31LG4G10380 Aethionema arabicum HOM05D005895 ORTHO05D007916 8.3e-226 787.3 580 69.8
Lj4g0008127 Lotus japonicus HOM05D005895 ORTHO05D007916 8.3e-226 787.3 625 67.5
CARHR063780 Cardamine hirsuta HOM05D005895 ORTHO05D007916 5.4e-225 784.6 576 69.6
Cc04_g11160 Coffea canephora HOM05D005895 ORTHO05D007916 7.0e-225 784.3 574 70.2
SalBow8G2958 Salvia bowleyana HOM05D005895 ORTHO05D007916 2.7e-224 782.3 625 65.3
vmacro01130 Vaccinium macrocarpon HOM05D005895 ORTHO05D007916 4.5e-224 781.6 675 63.7
PSO017G6602 Papaver somniferum HOM05D005895 ORTHO05D007916 7.8e-224 780.8 631 66.9
Aqoxy5G03807 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 1.0e-223 780.4 578 70.4
BcaC03g15207 Brassica carinata HOM05D005895 ORTHO05D007916 1.7e-223 779.6 627 67.0
Hund06020 Selenicereus undatus HOM05D005895 ORTHO05D007916 3.8e-223 778.5 554 71.1
AUR62024296 Chenopodium quinoa HOM05D005895 ORTHO05D007916 6.6e-223 777.7 631 65.5
VMungo0251G0514 Vigna mungo HOM05D005895 ORTHO05D007916 8.6e-223 777.3 628 65.8
PSO478G2260 Papaver somniferum HOM05D005895 ORTHO05D007916 2.5e-222 775.8 631 66.7
Migut.E00194 Erythranthe guttata HOM05D005895 ORTHO05D007916 4.3e-222 775.0 586 69.1
AUR62005446 Chenopodium quinoa HOM05D005895 ORTHO05D007916 3.1e-220 768.8 629 64.7
ECA233G5390 Erigeron canadensis HOM05D005895 ORTHO05D007916 3.1e-220 768.8 617 65.0
Nitab4.5_0006332g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 4.4e-219 765.0 623 64.5
EL10Ac6g13787 Beta vulgaris HOM05D005895 ORTHO05D007916 7.5e-219 764.2 639 63.8
Ah.03g133150 Amaranthus hybridus HOM05D005895 ORTHO05D007916 1.6e-216 756.5 634 64.0
Sc04g0009430 Simmondsia chinensis HOM05D005895 ORTHO05D007916 2.7e-216 755.7 560 70.2
HanXRQChr08g0208071 Helianthus annuus HOM05D005895 ORTHO05D007916 2.3e-215 752.7 577 66.4
Gohir.D02G159600 Gossypium hirsutum HOM05D005895 ORTHO05D007916 2.5e-214 749.2 556 70.3
Aqoxy3G01161 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 2.6e-211 739.2 606 63.2
HPP92_003081 Vanilla planifolia HOM05D005895 ORTHO05D007916 2.2e-210 736.1 556 67.6
Nn4g22655 Nelumbo nucifera HOM05D005895 ORTHO05D007916 1.7e-207 726.5 628 62.6
Manes.12G024300 Manihot esculenta HOM05D005895 ORTHO05D007916 2.5e-206 722.6 548 70.4
ClCG05G025660 Citrullus lanatus HOM05D005895 ORTHO05D007916 4.3e-206 721.8 575 67.1
Zm00001eb231230 Zea mays HOM05D005895 ORTHO05D007916 1.8e-204 716.5 554 65.7
ATR0585G083 Amborella trichopoda HOM05D005895 ORTHO05D007916 2.3e-204 716.1 558 67.0
Os02g0131200 Oryza sativa ssp. japonica HOM05D005895 ORTHO05D007916 6.8e-204 714.5 554 66.2
Lsat_1_v5_gn_8_150700 Lactuca sativa HOM05D005895 ORTHO05D007916 1.5e-203 713.4 630 61.9
Nitab4.5_0000370g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 1.3e-202 710.3 626 61.5
Phvul.003G063900 Phaseolus vulgaris HOM05D005895 ORTHO05D007916 1.9e-198 696.4 497 70.4
Manes.13G025800 Manihot esculenta HOM05D005895 ORTHO05D007916 4.7e-197 691.8 547 68.6
arahy.Tifrunner.gnm1.ann1.0I87EX Arachis hypogaea HOM05D005895 ORTHO05D007916 6.2e-197 691.4 553 66.9
Psat0s3772g0040 Pisum sativum HOM05D005895 ORTHO05D007916 1.4e-196 690.3 557 66.4
Ca_22578_v3 Cicer arietinum L. HOM05D005895 ORTHO05D007916 4.0e-196 688.7 556 66.2
MSTRG.2417 Avicennia marina HOM05D005895 ORTHO05D007916 1.7e-191 673.3 482 70.5
Duzib251G0200 Durio zibethinus HOM05D005895 ORTHO05D007916 8.7e-191 671.0 618 60.0
Gohir.A03G136300 Gossypium hirsutum HOM05D005895 ORTHO05D007916 9.9e-187 657.5 525 65.0
Zm00001eb209010 Zea mays HOM05D005895 ORTHO05D007916 1.1e-182 644.0 547 60.5
THA.LOC104818151 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 9.6e-182 641.0 478 70.1
unitig_52.g17177 Utricularia gibba HOM05D005895 ORTHO05D007916 2.4e-180 636.3 573 59.2
Oeu059911.1 Olea europaea HOM05D005895 ORTHO05D007916 5.8e-179 631.7 565 61.2
Mapoly0129s0050 Marchantia polymorpha HOM05D005895 ORTHO05D007916 1.7e-178 630.2 577 58.2
Sed0009772 Sechium edule HOM05D005895 ORTHO05D007916 2.7e-176 622.9 531 64.6
Pp3c12_14340 Physcomitrium patens HOM05D005895 ORTHO05D007916 3.1e-172 609.4 544 58.6
SMO119G0060 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 1.4e-164 583.9 543 58.4
Peaxi162Scf01242g00143 Petunia axillaris HOM05D005895 ORTHO05D007916 3.8e-162 575.9 414 69.8
AagrBONN_evm.TU.Sc2ySwM_368.1304 Anthoceros agrestis HOM05D005895 ORTHO05D007916 1.0e-146 524.6 483 57.1
Dinv24803 Davidia involucrata HOM05D005895 ORTHO05D007916 2.0e-142 510.4 418 66.5
Pp3c10_19590 Physcomitrium patens HOM05D005895 ORTHO05D007916 2.7e-107 393.7 399 53.1
FAN18G3006 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.5e-97 361.3 203 89.7
SHI17741 Sapria himalayana HOM05D000002 ORTHO05D000001 5.8e-86 322.8 288 60.1
CBR_g37586 Chara braunii HOM05D000019 ORTHO05D000048 7.9e-59 232.6 274 47.4
CBR_g37584 Chara braunii HOM05D000019 ORTHO05D000048 6.2e-56 223.0 209 54.1
Peaxi162Scf02256g00001 Petunia axillaris HOM05D005895 ORTHO05D007916 1.4e-52 211.8 144 71.5
SEGI_05407 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 6.7e-50 203.0 141 73.0
BcaB08g34808 Brassica carinata HOM05D005895 ORTHO05D007916 6.5e-37 159.8 100 73.0
SEGI_08481 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 6.3e-32 143.3 101 64.4
SEGI_24305 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 6.1e-27 126.7 102 60.8
Rhsim12G0041200 Rhododendron simsii HOM05D005895 ORTHO05D007916 1.6e-22 112.1 67 74.6
SMO163G0072 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 5.9e-22 110.2 183 40.4
BcaB05g24594 Brassica carinata HOM05D005895 ORTHO05D012801 2.7e-19 101.3 72 63.9
A02p16670 Brassica napus HOM05D005895 ORTHO05D012801 8.8e-18 96.3 65 69.2
BraA02t06723Z Brassica rapa HOM05D005895 ORTHO05D012801 8.8e-18 96.3 65 69.2
DCAR_028023 Daucus carota HOM05D005895 ORTHO05D007916 8.8e-18 96.3 85 61.2
C02p27930 Brassica napus HOM05D005895 ORTHO05D012801 4.4e-17 94.0 68 66.2
BolC2t08838H Brassica oleracea HOM05D005895 ORTHO05D012801 4.4e-17 94.0 68 66.2
DCAR_029453 Daucus carota HOM05D005895 ORTHO05D007916 1.1e-15 89.4 70 65.7
Gorai.012G172500 Gossypium raimondii HOM05D005895 ORTHO05D007916 7.0e-15 86.7 53 77.4
Ah.07g201790 Amaranthus hybridus HOM05D005895 ORTHO05D007916 4.5e-14 84.0 66 63.6
CSS0038190 Camellia sinensis var. sinensis HOM05D033929 ORTHO05D026310 2.7e-11 74.7 63 60.3
SEGI_38231 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 2.0e-06 58.5 40 67.5


User provided reference genes

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