Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0870 Fragaria x ananassa HOM05D004638 ORTHO05D005443 9.5e-224 780.0 442 100.0
FAN17G1367 Fragaria x ananassa HOM05D004638 ORTHO05D005443 5.1e-169 598.2 353 92.9
FvH4_2g18960 Fragaria vesca HOM05D004638 ORTHO05D005443 1.3e-167 593.6 353 91.5
FAN24G1523 Fragaria x ananassa HOM05D004638 ORTHO05D005443 1.3e-167 593.6 353 91.8
FvH4_4g05060 Fragaria vesca HOM05D004638 ORTHO05D005443 4.1e-166 588.6 353 91.5
FAN12G0885 Fragaria x ananassa HOM05D004638 ORTHO05D005443 4.1e-166 588.6 353 91.5
FAN15G0747 Fragaria x ananassa HOM05D004638 ORTHO05D005443 2.0e-160 569.7 350 88.9
RcHm_v2.0_Chr4g0395981 Rosa chinensis HOM05D004638 ORTHO05D005443 3.1e-150 535.8 349 84.2
MD16G1229100 Malus domestica HOM05D004638 ORTHO05D005443 3.0e-108 396.4 360 66.1
Prupe.1G051000 Prunus persica HOM05D004638 ORTHO05D005443 2.0e-104 383.6 354 66.1
QL06p021792 Quercus lobata HOM05D004638 ORTHO05D005443 1.1e-99 367.9 352 61.6
CiPaw.01G176300 Carya illinoinensis HOM05D004638 ORTHO05D005443 1.9e-99 367.1 355 61.7
Cfa014805 Carpinus fangiana HOM05D004638 ORTHO05D005443 1.2e-98 364.4 353 60.6
ClCG06G018050 Citrullus lanatus HOM05D004638 ORTHO05D005443 9.9e-96 354.8 360 58.1
Ciclev10025979m.g Citrus clementina HOM05D004638 ORTHO05D005443 6.4e-95 352.1 357 62.2
Gohir.A09G230500 Gossypium hirsutum HOM05D004638 ORTHO05D005443 2.4e-94 350.1 353 62.0
Gorai.006G254300 Gossypium raimondii HOM05D004638 ORTHO05D005443 4.2e-94 349.4 354 60.7
Gohir.D09G231600 Gossypium hirsutum HOM05D004638 ORTHO05D005443 5.4e-94 349.0 353 60.9
Duzib052G1194 Durio zibethinus HOM05D004638 ORTHO05D005443 2.7e-93 346.7 353 58.1
Haze_11486 Corylus avellana HOM05D004638 ORTHO05D005443 1.7e-92 344.0 353 59.8
Haze_15400 Corylus avellana HOM05D004638 ORTHO05D005443 3.9e-92 342.8 353 59.5
Haze_15402 Corylus avellana HOM05D004638 ORTHO05D005443 3.9e-92 342.8 353 59.5
MELO3C026193.2 Cucumis melo HOM05D004638 ORTHO05D005443 1.1e-91 341.3 352 58.5
Duzib212G0972 Durio zibethinus HOM05D004638 ORTHO05D005443 1.5e-91 340.9 358 57.5
CsaV3_1G000420 Cucumis sativus L. HOM05D004638 ORTHO05D005443 3.3e-91 339.7 352 58.0
Atru.chr4.1922 Acer truncatum HOM05D004638 ORTHO05D005443 9.6e-91 338.2 359 57.7
Thecc.04G268000 Theobroma cacao HOM05D004638 ORTHO05D005443 2.8e-90 336.7 358 58.1
TWI53G1292 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 1.4e-89 334.3 336 58.9
PGR142G1578 Punica granatum HOM05D004638 ORTHO05D005443 2.0e-88 330.5 353 55.0
COL.COLO4_15993 Corchorus olitorius HOM05D004638 ORTHO05D005443 7.6e-88 328.6 359 60.4
Aa31LG11G6060 Aethionema arabicum HOM05D004638 ORTHO05D005443 4.9e-87 325.9 358 55.9
Eucgr.H01383 Eucalyptus grandis HOM05D004638 ORTHO05D005443 5.4e-86 322.4 349 56.4
Potri.010G064100 Populus trichocarpa HOM05D004638 ORTHO05D005443 1.6e-85 320.9 347 55.6
Manes.15G046900 Manihot esculenta HOM05D004638 ORTHO05D005443 2.1e-85 320.5 353 57.2
Glyma.19G074500 Glycine max HOM05D004638 ORTHO05D005443 7.9e-85 318.5 340 56.8
Cpa.g.c29962.1 Carica papaya HOM05D004638 ORTHO05D005443 2.3e-84 317.0 356 57.0
Atru.chr2.74 Acer truncatum HOM05D004638 ORTHO05D005443 8.7e-84 315.1 324 63.6
Sed0011634 Sechium edule HOM05D004638 ORTHO05D005443 1.5e-83 314.3 352 54.8
CANSAT01G0932 Cannabis sativa HOM05D004638 ORTHO05D005443 2.1e-82 310.5 352 56.0
CANSAT01G3035 Cannabis sativa HOM05D004638 ORTHO05D005443 2.1e-82 310.5 352 56.0
CiPaw.02G105500 Carya illinoinensis HOM05D004638 ORTHO05D005443 6.2e-82 308.9 345 55.4
TAR623G0129 Trochodendron aralioides HOM05D004638 ORTHO05D005443 8.1e-82 308.5 332 56.6
VMungo1215G0894 Vigna mungo HOM05D004638 ORTHO05D005443 1.4e-81 307.8 355 52.1
THA.LOC104800549 Tarenaya hassleriana HOM05D004638 ORTHO05D005443 2.4e-81 307.0 341 55.1
Sp6g37620 Schrenkiella parvula HOM05D004638 ORTHO05D005443 5.3e-81 305.8 376 53.2
ClCG06G007330 Citrullus lanatus HOM05D004638 ORTHO05D005443 6.9e-81 305.4 351 52.7
Thhalv10013953m.g Eutrema salsugineum HOM05D004638 ORTHO05D005443 6.9e-81 305.4 382 53.9
Phvul.003G100800 Phaseolus vulgaris HOM05D004638 ORTHO05D005443 6.9e-81 305.4 354 51.7
MELO3C023050.2 Cucumis melo HOM05D004638 ORTHO05D005443 9.0e-81 305.1 349 52.7
CsaV3_2G012340 Cucumis sativus L. HOM05D004638 ORTHO05D005443 3.4e-80 303.1 360 51.1
Psat2g177000 Pisum sativum HOM05D004638 ORTHO05D005443 4.5e-80 302.8 336 52.4
Hma1.2p1_0751F.1_g212710 Hydrangea macrophylla HOM05D004638 ORTHO05D005443 2.9e-79 300.1 366 50.8
Sabra10G0042900 Salix brachista HOM05D004638 ORTHO05D005443 1.4e-78 297.7 356 55.1
Ah.16g102130 Amaranthus hybridus HOM05D004638 ORTHO05D005443 2.4e-78 297.0 347 54.8
TWI73G0168 Tripterygium wilfordii HOM05D004638 ORTHO05D005443 4.2e-78 296.2 353 57.5
Potri.008G173300 Populus trichocarpa HOM05D004638 ORTHO05D005443 1.2e-77 294.7 341 54.3
DCAR_007662 Daucus carota HOM05D004638 ORTHO05D005443 1.8e-76 290.8 353 51.3
Lj2C17T3 Lonicera japonica HOM05D004638 ORTHO05D005443 2.3e-76 290.4 343 53.4
GSVIVG01027946001 Vitis vinifera HOM05D004638 ORTHO05D005443 3.0e-76 290.0 354 52.5
C03p02590 Brassica napus HOM05D004638 ORTHO05D005443 5.1e-76 289.3 375 52.0
Glyma.05G075900 Glycine max HOM05D004638 ORTHO05D005443 6.7e-76 288.9 335 53.7
BcaB01g05944 Brassica carinata HOM05D004638 ORTHO05D005443 1.9e-75 287.3 365 51.8
BraA02t04837Z Brassica rapa HOM05D004638 ORTHO05D005443 2.5e-75 287.0 355 53.0
MD13G1224300 Malus domestica HOM05D004638 ORTHO05D005443 2.5e-75 287.0 277 63.9
BcaB05g21727 Brassica carinata HOM05D004638 ORTHO05D005443 3.3e-75 286.6 361 51.8
C02p02210 Brassica napus HOM05D004638 ORTHO05D005443 3.3e-75 286.6 355 53.0
BolC3t12811H Brassica oleracea HOM05D004638 ORTHO05D005443 2.1e-74 283.9 372 51.1
AL6G15050 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 3.7e-74 283.1 361 51.8
BcaC03g13151 Brassica carinata HOM05D004638 ORTHO05D005443 3.7e-74 283.1 359 52.6
BolC2t06190H Brassica oleracea HOM05D004638 ORTHO05D005443 3.7e-74 283.1 359 52.6
BcaB01g05717 Brassica carinata HOM05D004638 ORTHO05D005443 8.1e-74 282.0 369 51.2
Medtr5g012820 Medicago truncatula HOM05D004638 ORTHO05D005443 1.1e-73 281.6 353 49.9
A03p02250 Brassica napus HOM05D004638 ORTHO05D005443 3.1e-73 280.0 372 50.8
BraA03t09589Z Brassica rapa HOM05D004638 ORTHO05D005443 3.1e-73 280.0 372 50.8
EL10Ac2g04652 Beta vulgaris HOM05D004638 ORTHO05D005443 4.0e-73 279.6 362 53.0
Carub.0006s0414 Capsella rubella HOM05D004638 ORTHO05D005443 5.3e-73 279.3 358 50.6
CARHR208030 Cardamine hirsuta HOM05D004638 ORTHO05D005443 2.6e-72 276.9 333 52.9
TPR.G7963 Trifolium pratense HOM05D004638 ORTHO05D005443 3.4e-72 276.6 353 51.0
Aqoxy5G00949 Aquilegia oxysepala HOM05D004638 ORTHO05D005443 2.2e-71 273.9 376 48.9
Dinv31214 Davidia involucrata HOM05D001005 ORTHO05D000836 1.1e-70 271.6 331 52.3
arahy.Tifrunner.gnm1.ann1.L9DXTM Arachis hypogaea HOM05D004638 ORTHO05D005443 2.1e-69 267.3 352 53.4
AT5G05210 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 4.6e-69 266.2 378 48.1
Lalb_Chr11g0063191 Lupinus albus HOM05D004638 ORTHO05D005443 4.6e-69 266.2 355 48.2
Lalb_Chr08g0244981 Lupinus albus HOM05D004638 ORTHO05D005443 1.5e-67 261.2 334 50.0
ATR0051G063 Amborella trichopoda HOM05D004638 ORTHO05D005443 1.9e-67 260.8 332 53.3
Ca_03509_v3 Cicer arietinum L. HOM05D004638 ORTHO05D005443 7.4e-67 258.8 360 46.4
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 2.1e-66 257.3 353 50.7
PGSC0003DMG400013656 Solanum tuberosum HOM05D004638 ORTHO05D005443 1.2e-64 251.5 349 49.0
HPP92_027401 Vanilla planifolia HOM05D004638 ORTHO05D005443 4.5e-64 249.6 363 42.4
TPR.G18128 Trifolium pratense HOM05D004638 ORTHO05D005443 2.2e-63 247.3 368 43.2
Lj4g0009002 Lotus japonicus HOM05D004638 ORTHO05D005443 5.0e-63 246.1 335 49.6
SGA_v2.0_scaffold21G09643 Striga asiatica HOM05D004638 ORTHO05D005443 2.5e-62 243.8 335 46.3
Oeu017919.1 Olea europaea HOM05D004638 ORTHO05D005443 3.2e-62 243.4 372 44.1
Solyc02g082130.2 Solanum lycopersicum HOM05D004638 ORTHO05D005443 4.2e-62 243.0 365 44.4
Sopen02g026790 Solanum pennellii HOM05D004638 ORTHO05D005443 1.2e-61 241.5 364 44.0
Nitab4.5_0000614g0010 Nicotiana tabacum HOM05D004638 ORTHO05D005443 1.6e-61 241.1 341 49.0
CDE06G2325 Ceratophyllum demersum HOM05D004638 ORTHO05D005443 2.1e-61 240.7 326 47.5
Peaxi162Scf00048g00171 Petunia axillaris HOM05D004638 ORTHO05D005443 3.5e-61 240.0 368 45.9
Nitab4.5_0001815g0110 Nicotiana tabacum HOM05D004638 ORTHO05D005443 2.3e-60 237.3 358 45.0
COL.COLO4_32263 Corchorus olitorius HOM05D004638 ORTHO05D005443 6.7e-60 235.7 357 49.6
Sc06g0001700 Simmondsia chinensis HOM05D004638 ORTHO05D005443 3.3e-59 233.4 349 45.0
SalBow5G3921 Salvia bowleyana HOM05D004638 ORTHO05D005443 1.6e-58 231.1 329 43.5
HanXRQChr11g0320631 Helianthus annuus HOM05D004638 ORTHO05D005443 2.4e-57 227.3 366 46.4
SGA_v2.0_scaffold41G15829 Striga asiatica HOM05D004638 ORTHO05D005443 4.1e-57 226.5 337 45.4
Migut.L01893 Erythranthe guttata HOM05D004638 ORTHO05D005443 1.2e-56 224.9 334 47.3
Lsat_1_v5_gn_9_30280 Lactuca sativa HOM05D004638 ORTHO05D005443 2.6e-56 223.8 344 46.2
ECA246G4403 Erigeron canadensis HOM05D004638 ORTHO05D005443 3.4e-56 223.4 358 43.0
HanXRQChr14g0438771 Helianthus annuus HOM05D004638 ORTHO05D005443 1.3e-55 221.5 370 46.2
Zm00001eb248040 Zea mays HOM05D004638 ORTHO05D005443 3.6e-53 213.4 353 45.6
MSTRG.13923 Avicennia marina HOM05D004638 ORTHO05D005443 7.9e-53 212.2 338 42.3
MSTRG.26536 Avicennia marina HOM05D004638 ORTHO05D005443 7.9e-53 212.2 338 42.3
CAN.G809.17 Capsicum annuum HOM05D004638 ORTHO05D005443 7.9e-53 212.2 362 45.0
CDE07G1349 Ceratophyllum demersum HOM05D002308 ORTHO05D005297 2.8e-50 203.8 308 43.8
Mapoly0122s0042 Marchantia polymorpha HOM05D004638 ORTHO05D005443 6.3e-50 202.6 349 41.0
Carub.0004s0850 Capsella rubella HOM05D004638 ORTHO05D005443 1.8e-49 201.1 325 44.6
AL4G22550 Arabidopsis lyrata HOM05D004638 ORTHO05D005443 4.7e-45 186.4 322 41.6
Cc04_g09510 Coffea canephora HOM05D004638 ORTHO05D005443 6.1e-45 186.0 364 40.1
CSS0022021 Camellia sinensis var. sinensis HOM05D004638 ORTHO05D005443 3.0e-44 183.7 296 50.0
SEGI_31736 Sequoiadendron giganteum HOM05D004638 ORTHO05D005443 1.7e-42 177.9 343 37.9
arahy.Tifrunner.gnm1.ann1.XHZZ6B Arachis hypogaea HOM05D004638 ORTHO05D005443 2.6e-40 170.6 318 42.1
Nn4g24624 Nelumbo nucifera HOM05D004638 ORTHO05D005443 2.6e-40 170.6 212 49.5
Actinidia06751 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.7e-39 167.9 276 47.1
Os05g0372200 Oryza sativa ssp. japonica HOM05D004638 ORTHO05D005443 1.1e-38 165.2 356 39.9
Medtr2g079000 Medicago truncatula HOM05D004638 ORTHO05D005443 2.1e-37 161.0 323 38.4
AUR62014564 Chenopodium quinoa HOM05D004638 ORTHO05D005443 2.7e-37 160.6 336 37.8
Pp3c8_4010 Physcomitrium patens HOM05D004638 ORTHO05D005443 2.7e-37 160.6 342 36.0
AagrBONN_evm.TU.Sc2ySwM_368.887 Anthoceros agrestis HOM05D004638 ORTHO05D005443 3.0e-36 157.1 316 35.1
Actinidia22435 Actinidia chinensis HOM05D004638 ORTHO05D005443 1.8e-33 147.9 125 65.6
SMO119G0466 Selaginella moellendorffii HOM05D004638 ORTHO05D005443 7.7e-32 142.5 346 34.7
Atru.chr4.1888 Acer truncatum HOM05D004638 ORTHO05D005443 5.0e-31 139.8 330 33.9
AT2G27750 Arabidopsis thaliana HOM05D004638 ORTHO05D005443 1.4e-28 131.7 150 53.3
HanXRQChr11g0320651 Helianthus annuus HOM05D004638 ORTHO05D005443 3.0e-28 130.6 183 44.8
Lj3g0004611 Lotus japonicus HOM05D004638 ORTHO05D005443 6.8e-28 129.4 310 35.8
arahy.Tifrunner.gnm1.ann1.EFW0VL Arachis hypogaea HOM05D004638 ORTHO05D005443 1.7e-23 114.8 176 50.6
Manes.12G121700 Manihot esculenta HOM05D004638 ORTHO05D005443 1.9e-22 111.3 200 50.0
AUR62039396 Chenopodium quinoa HOM05D004638 ORTHO05D005443 1.2e-21 108.6 108 57.4
Oeu016931.1 Olea europaea HOM05D004638 ORTHO05D005443 2.7e-21 107.5 249 36.9
unitig_22.g5966 Utricularia gibba HOM05D004638 ORTHO05D005443 5.7e-19 99.8 153 42.5
CBR_g30748 Chara braunii HOM05D003542 ORTHO05D004799 3.7e-18 97.1 428 28.3
RcHm_v2.0_Chr3g0493171 Rosa chinensis HOM05D004638 ORTHO05D005443 8.3e-18 95.9 60 76.7
RcHm_v2.0_Chr5g0061161 Rosa chinensis HOM05D004638 ORTHO05D005443 7.0e-17 92.8 60 75.0
Actinidia16422 Actinidia chinensis HOM05D004638 ORTHO05D005443 4.5e-16 90.1 97 50.5
MCO04G484 Micromonas commoda HOM05D004638 ORTHO05D005443 7.7e-16 89.4 350 30.9
unitig_22.g5967 Utricularia gibba HOM05D004638 ORTHO05D005443 6.6e-15 86.3 97 48.5
Lj3g0021975 Lotus japonicus HOM05D004638 ORTHO05D005443 1.9e-14 84.7 127 44.9
AUR62039395 Chenopodium quinoa HOM05D004638 ORTHO05D005443 4.4e-11 73.6 86 46.5
Sabra08G0132300 Salix brachista HOM05D004638 ORTHO05D005443 1.3e-10 72.0 162 35.2
Nitab4.5_0000047g0220 Nicotiana tabacum HOM05D004638 ORTHO05D005443 5.4e-09 66.6 85 44.7
Nitab4.5_0000047g0240 Nicotiana tabacum HOM05D004638 ORTHO05D005443 2.3e-07 61.2 81 44.4
Medtr2g079040 Medicago truncatula HOM05D004638 ORTHO05D005443 5.0e-07 60.1 50 64.0
Dinv36410 Davidia involucrata HOM05D004638 ORTHO05D005443 7.3e-06 56.2 59 54.2


User provided reference genes

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