Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0836 Fragaria x ananassa HOM05D002800 ORTHO05D029160 8.1e-42 173.3 88 100.0
FAN17G2228 Fragaria x ananassa HOM05D002800 ORTHO05D029160 9.3e-38 159.8 88 93.2
FAN17G1333 Fragaria x ananassa HOM05D002800 ORTHO05D009276 9.6e-27 123.2 87 78.2
FAN22G2383 Fragaria x ananassa HOM05D002800 ORTHO05D009276 9.6e-27 123.2 87 78.2
FvH4_4g32820 Fragaria vesca HOM05D002800 ORTHO05D009276 2.8e-26 121.7 87 77.0
FAN17G0747 Fragaria x ananassa HOM05D002800 ORTHO05D009276 4.8e-26 120.9 87 77.0
FAN12G2619 Fragaria x ananassa HOM05D002800 ORTHO05D009276 6.2e-26 120.6 87 75.9
RcHm_v2.0_Chr4g0441801 Rosa chinensis HOM05D002800 ORTHO05D009276 6.2e-26 120.6 87 75.9
Prupe.1G329200 Prunus persica HOM05D002800 ORTHO05D009276 4.5e-24 114.4 87 72.4
MD16G1023700 Malus domestica HOM05D002800 ORTHO05D009276 1.0e-23 113.2 87 70.1
Cfa014971 Carpinus fangiana HOM05D002800 ORTHO05D009276 1.9e-22 109.0 87 67.8
TWI77G0462 Tripterygium wilfordii HOM05D002800 ORTHO05D009276 2.5e-22 108.6 87 67.8
ClCG07G006020 Citrullus lanatus HOM05D002800 ORTHO05D009276 3.2e-22 108.2 87 66.7
Potri.008G131400 Populus trichocarpa HOM05D002800 ORTHO05D009276 3.2e-22 108.2 87 66.7
Sc04g0006300 Simmondsia chinensis HOM05D002800 ORTHO05D009276 3.2e-22 108.2 87 70.1
CiPaw.06G047800 Carya illinoinensis HOM05D002800 ORTHO05D009276 4.2e-22 107.8 87 67.8
Sabra08G0100200 Salix brachista HOM05D002800 ORTHO05D009276 4.2e-22 107.8 87 66.7
COL.COLO4_13112 Corchorus olitorius HOM05D002800 ORTHO05D009276 9.3e-22 106.7 87 66.7
CsaV3_5G014670 Cucumis sativus L. HOM05D002800 ORTHO05D009276 9.3e-22 106.7 87 65.5
Ah.14g084900 Amaranthus hybridus HOM05D002800 ORTHO05D009276 1.2e-21 106.3 87 64.4
Aqoxy1G01933 Aquilegia oxysepala HOM05D002800 ORTHO05D009276 1.2e-21 106.3 87 66.7
CSS0015131 Camellia sinensis var. sinensis HOM05D002800 ORTHO05D009276 1.2e-21 106.3 87 67.8
TPR.G38283 Trifolium pratense HOM05D002800 ORTHO05D009276 1.2e-21 106.3 87 67.8
AUR62039518 Chenopodium quinoa HOM05D002800 ORTHO05D009276 1.6e-21 105.9 87 65.5
MELO3C026420.2 Cucumis melo HOM05D002800 ORTHO05D009276 1.6e-21 105.9 87 65.5
Actinidia40500 Actinidia chinensis HOM05D002800 ORTHO05D009276 3.5e-21 104.8 87 66.7
Ciclev10014623m.g Citrus clementina HOM05D002800 ORTHO05D009276 3.5e-21 104.8 87 64.4
AUR62014188 Chenopodium quinoa HOM05D002800 ORTHO05D009276 4.6e-21 104.4 87 64.4
Duzib251G0406 Durio zibethinus HOM05D002800 ORTHO05D009276 4.6e-21 104.4 87 63.2
Hma1.2p1_0490F.1_g164240 Hydrangea macrophylla HOM05D002800 ORTHO05D009276 6.1e-21 104.0 87 64.4
SalBow2G1819 Salvia bowleyana HOM05D002800 ORTHO05D009276 7.9e-21 103.6 87 65.5
vmacro00405 Vaccinium macrocarpon HOM05D002800 ORTHO05D009276 7.9e-21 103.6 87 67.8
Eucgr.L01855 Eucalyptus grandis HOM05D002800 ORTHO05D009276 1.0e-20 103.2 87 63.2
Gohir.A01G150600 Gossypium hirsutum HOM05D002800 ORTHO05D009276 1.0e-20 103.2 87 63.2
Gohir.D01G143800 Gossypium hirsutum HOM05D002800 ORTHO05D009276 1.0e-20 103.2 87 63.2
Gorai.002G177300 Gossypium raimondii HOM05D002800 ORTHO05D009276 1.0e-20 103.2 87 63.2
CSS0030320 Camellia sinensis var. sinensis HOM05D002800 ORTHO05D009276 1.3e-20 102.8 87 66.7
Lj3A867T56 Lonicera japonica HOM05D002800 ORTHO05D009276 1.3e-20 102.8 87 65.5
Phvul.002G096000 Phaseolus vulgaris HOM05D002800 ORTHO05D009276 1.3e-20 102.8 87 65.5
Rhsim09G0064600 Rhododendron simsii HOM05D002800 ORTHO05D009276 1.3e-20 102.8 87 67.8
EL10Ac6g14180 Beta vulgaris HOM05D002800 ORTHO05D009276 1.8e-20 102.4 87 65.5
BcaB03g14845 Brassica carinata HOM05D002800 ORTHO05D009276 1.8e-20 102.4 87 65.5
CANSAT01G0372 Cannabis sativa HOM05D002800 ORTHO05D009276 1.8e-20 102.4 87 63.2
Glyma.20G018000 Glycine max HOM05D002800 ORTHO05D009276 1.8e-20 102.4 87 65.5
Manes.17G079900 Manihot esculenta HOM05D002800 ORTHO05D009276 1.8e-20 102.4 87 65.5
VMungo0251G3764 Vigna mungo HOM05D002800 ORTHO05D009276 1.8e-20 102.4 87 65.5
Atru.chr11.669 Acer truncatum HOM05D002800 ORTHO05D009276 2.3e-20 102.1 87 63.2
Cpa.g.sc2.243 Carica papaya HOM05D002800 ORTHO05D009276 2.3e-20 102.1 87 64.4
Dinv28035 Davidia involucrata HOM05D002800 ORTHO05D009276 2.3e-20 102.1 87 65.5
Eucgr.B02929 Eucalyptus grandis HOM05D002800 ORTHO05D009276 2.3e-20 102.1 87 63.2
Lalb_Chr16g0385101 Lupinus albus HOM05D002800 ORTHO05D009276 2.3e-20 102.1 87 62.1
Lj4g0021464 Lotus japonicus HOM05D002800 ORTHO05D009276 3.0e-20 101.7 87 63.2
Medtr4g084270 Medicago truncatula HOM05D002800 ORTHO05D009276 3.0e-20 101.7 87 64.4
MSTRG.2154 Avicennia marina HOM05D002800 ORTHO05D009276 3.9e-20 101.3 87 63.2
Ca_18747_v3 Cicer arietinum L. HOM05D002800 ORTHO05D009276 3.9e-20 101.3 87 64.4
ECA246G2610 Erigeron canadensis HOM05D002800 ORTHO05D009276 3.9e-20 101.3 87 64.4
Psat7g128920 Pisum sativum HOM05D002800 ORTHO05D009276 3.9e-20 101.3 87 64.4
PGR102G3270 Punica granatum HOM05D002800 ORTHO05D009276 3.9e-20 101.3 87 63.2
Thecc.02G286500 Theobroma cacao HOM05D002800 ORTHO05D009276 3.9e-20 101.3 87 60.9
AT1G70820 Arabidopsis thaliana HOM05D002800 ORTHO05D009276 5.1e-20 100.9 87 64.4
BcaC08g46528 Brassica carinata HOM05D002800 ORTHO05D009276 5.1e-20 100.9 87 65.5
A07p37230 Brassica napus HOM05D002800 ORTHO05D009276 5.1e-20 100.9 87 65.5
C06p44900 Brassica napus HOM05D002800 ORTHO05D009276 5.1e-20 100.9 87 65.5
BraA07t31283Z Brassica rapa HOM05D002800 ORTHO05D009276 5.1e-20 100.9 87 65.5
BolC6t39549H Brassica oleracea HOM05D002800 ORTHO05D009276 6.7e-20 100.5 87 64.4
CARHR064080 Cardamine hirsuta HOM05D002800 ORTHO05D009276 6.7e-20 100.5 87 64.4
SGA_v2.0_scaffold257G45701 Striga asiatica HOM05D002800 ORTHO05D009276 6.7e-20 100.5 87 63.2
QL03p033690 Quercus lobata HOM05D002800 ORTHO05D009276 8.7e-20 100.1 87 62.1
TAR629G0125 Trochodendron aralioides HOM05D002800 ORTHO05D009276 8.7e-20 100.1 87 62.1
GSVIVG01011714001 Vitis vinifera HOM05D002800 ORTHO05D009276 1.1e-19 99.8 87 64.4
Carub.0002s1757 Capsella rubella HOM05D002800 ORTHO05D009276 1.5e-19 99.4 87 63.2
HanXRQChr17g0567431 Helianthus annuus HOM05D002800 ORTHO05D009276 1.5e-19 99.4 87 62.1
THA.LOC104809154 Tarenaya hassleriana HOM05D002800 ORTHO05D009276 1.5e-19 99.4 87 63.2
Oeu063595.1 Olea europaea HOM05D002800 ORTHO05D009276 1.9e-19 99.0 88 63.6
Sp5g26000 Schrenkiella parvula HOM05D002800 ORTHO05D009276 1.9e-19 99.0 87 63.2
Sed0025209 Sechium edule HOM05D002800 ORTHO05D009276 1.9e-19 99.0 87 60.9
Solyc05g026490.3 Solanum lycopersicum HOM05D002800 ORTHO05D009276 1.9e-19 99.0 87 65.5
Sopen05g022920 Solanum pennellii HOM05D002800 ORTHO05D009276 1.9e-19 99.0 87 65.5
Lsat_1_v5_gn_3_55461 Lactuca sativa HOM05D002800 ORTHO05D009276 2.5e-19 98.6 87 64.4
AL2G30270 Arabidopsis lyrata HOM05D002800 ORTHO05D009276 5.7e-19 97.4 87 62.1
Cc11_g08330 Coffea canephora HOM05D002800 ORTHO05D009276 5.7e-19 97.4 87 62.1
Aa31LG4G10190 Aethionema arabicum HOM05D002800 ORTHO05D009276 1.3e-18 96.3 87 60.9
DCAR_026782 Daucus carota HOM05D002800 ORTHO05D009276 1.3e-18 96.3 82 64.6
Nitab4.5_0000135g0080 Nicotiana tabacum HOM05D002800 ORTHO05D009276 2.2e-18 95.5 87 62.1
ATR0317G082 Amborella trichopoda HOM05D002800 ORTHO05D009276 3.7e-18 94.7 85 61.2
arahy.Tifrunner.gnm1.ann1.2KYQ06 Arachis hypogaea HOM05D002800 ORTHO05D009276 3.7e-18 94.7 89 64.0
unitig_699.g19537 Utricularia gibba HOM05D002800 ORTHO05D009276 4.8e-18 94.4 87 59.8
FvH4_4g32810 Fragaria vesca HOM05D000408 ORTHO05D000655 6.3e-18 94.0 62 80.6
Nn4g24229 Nelumbo nucifera HOM05D002800 ORTHO05D009276 6.3e-18 94.0 87 56.3
Nitab4.5_0000089g0030 Nicotiana tabacum HOM05D002800 ORTHO05D009276 6.3e-18 94.0 87 62.1
PSO017G4836 Papaver somniferum HOM05D002800 ORTHO05D009276 8.2e-18 93.6 88 58.0
CAN.G70.8 Capsicum annuum HOM05D002800 ORTHO05D009276 2.4e-17 92.0 87 60.9
MBI19_g14788_MAGBIO Magnolia biondii HOM05D002800 ORTHO05D009276 2.4e-17 92.0 86 59.3
arahy.Tifrunner.gnm1.ann1.RI7QVZ Arachis hypogaea HOM05D002800 ORTHO05D009276 3.1e-17 91.7 89 60.7
PSO478G3875 Papaver somniferum HOM05D002800 ORTHO05D009276 3.1e-17 91.7 88 55.7
Zm00001eb308980 Zea mays HOM05D002800 ORTHO05D009276 6.9e-17 90.5 87 57.5
Peaxi162Scf00159g01647 Petunia axillaris HOM05D002800 ORTHO05D009276 2.6e-16 88.6 80 63.8
Haze_10950 Corylus avellana HOM05D002800 ORTHO05D009276 1.0e-15 86.7 62 71.0
Os06g0476200 Oryza sativa ssp. japonica HOM05D002800 ORTHO05D009276 1.7e-15 85.9 87 52.9
A02p16910 Brassica napus HOM05D002800 ORTHO05D021607 2.9e-15 85.1 87 57.5
BraA02t06743Z Brassica rapa HOM05D002800 ORTHO05D021607 2.9e-15 85.1 87 57.5
Haze_10954 Corylus avellana HOM05D002800 ORTHO05D029160 5.0e-15 84.3 61 70.5
Migut.E00441 Erythranthe guttata HOM05D002800 ORTHO05D009276 7.2e-14 80.5 66 63.6
Thhalv10018305m.g Eutrema salsugineum HOM05D002800 ORTHO05D009276 1.6e-13 79.3 65 66.2
C02p28270 Brassica napus HOM05D002800 ORTHO05D021607 2.7e-13 78.6 87 54.0
BolC2t08871H Brassica oleracea HOM05D002800 ORTHO05D021607 2.7e-13 78.6 87 54.0
BcaC03g15238 Brassica carinata HOM05D002800 ORTHO05D021607 7.9e-13 77.0 87 52.9
BcaC08g46530 Brassica carinata HOM05D002800 ORTHO05D021607 1.5e-11 72.8 87 51.7
AagrBONN_evm.TU.Sc2ySwM_340.254 Anthoceros agrestis HOM05D002800 ORTHO05D009276 2.5e-11 72.0 89 44.9


User provided reference genes

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