Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0589 Fragaria x ananassa HOM05D005523 ORTHO05D007089 0.0e+00 1255.4 625 100.0
FAN07G2138 Fragaria x ananassa HOM05D005523 ORTHO05D007089 0.0e+00 1229.9 625 98.2
FAN17G1793 Fragaria x ananassa HOM05D005523 ORTHO05D007089 0.0e+00 1221.8 649 94.8
FvH4_4g29880 Fragaria vesca HOM05D005523 ORTHO05D007089 0.0e+00 1189.9 619 96.1
FAN12G2921 Fragaria x ananassa HOM05D005523 ORTHO05D007089 0.0e+00 1171.4 656 90.7
RcHm_v2.0_Chr4g0438141 Rosa chinensis HOM05D005523 ORTHO05D007089 0.0e+00 1113.2 633 88.5
MD13G1061700 Malus domestica HOM05D005523 ORTHO05D007089 1.3e-274 949.5 660 72.9
MD16G1060200 Malus domestica HOM05D005523 ORTHO05D007089 2.2e-274 948.7 664 72.9
Prupe.1G288300 Prunus persica HOM05D005523 ORTHO05D007089 3.2e-273 944.9 681 72.0
QL03p074443 Quercus lobata HOM05D005523 ORTHO05D007089 1.2e-248 863.2 687 67.0
QL03p074024 Quercus lobata HOM05D005523 ORTHO05D007089 6.0e-248 860.9 687 66.8
CANSAT64G1787 Cannabis sativa HOM05D005523 ORTHO05D007089 1.1e-244 850.1 672 65.8
CiPaw.05G124500 Carya illinoinensis HOM05D005523 ORTHO05D007089 2.9e-242 842.0 683 64.9
Ciclev10033727m.g Citrus clementina HOM05D005523 ORTHO05D007089 5.4e-241 837.8 649 66.6
Atru.chr11.1618 Acer truncatum HOM05D005523 ORTHO05D007089 1.3e-239 833.2 635 67.4
Potri.010G157700 Populus trichocarpa HOM05D005523 ORTHO05D007089 3.7e-237 825.1 672 65.5
Thecc.02G329500 Theobroma cacao HOM05D005523 ORTHO05D007089 6.2e-237 824.3 655 65.8
Glyma.20G025400 Glycine max HOM05D005523 ORTHO05D007089 1.2e-235 820.1 649 64.1
COL.COLO4_27873 Corchorus olitorius HOM05D005523 ORTHO05D007089 6.4e-234 814.3 655 65.6
GSVIVG01012228001 Vitis vinifera HOM05D005523 ORTHO05D007089 9.3e-233 810.4 648 64.8
Cfa008872 Carpinus fangiana HOM05D005523 ORTHO05D007089 5.1e-231 804.7 648 64.4
Gorai.008G176600 Gossypium raimondii HOM05D005523 ORTHO05D007089 1.9e-230 802.7 657 64.7
Gohir.D12G164000 Gossypium hirsutum HOM05D005523 ORTHO05D007089 9.6e-230 800.4 657 64.4
Phvul.002G101900 Phaseolus vulgaris HOM05D005523 ORTHO05D007089 8.4e-226 787.3 646 62.4
TWI79G0260 Tripterygium wilfordii HOM05D005523 ORTHO05D007089 2.5e-225 785.8 669 62.2
Lj4g0005251 Lotus japonicus HOM05D005523 ORTHO05D007089 9.3e-225 783.9 654 61.8
Duzib251G0966 Durio zibethinus HOM05D005523 ORTHO05D007089 1.6e-224 783.1 650 63.5
Lalb_Chr05g0219911 Lupinus albus HOM05D005523 ORTHO05D007089 1.3e-223 780.0 669 61.1
Medtr4g083180 Medicago truncatula HOM05D005523 ORTHO05D007089 2.3e-223 779.2 645 61.4
Psat7g133840 Pisum sativum HOM05D005523 ORTHO05D007089 2.3e-223 779.2 645 61.4
Haze_11899 Corylus avellana HOM05D005523 ORTHO05D007089 5.1e-223 778.1 643 63.6
Rhsim02G0238300 Rhododendron simsii HOM05D005523 ORTHO05D007089 5.1e-223 778.1 722 57.3
Sed0024899 Sechium edule HOM05D005523 ORTHO05D007089 5.7e-222 774.6 671 60.5
CsaV3_5G033360 Cucumis sativus L. HOM05D005523 ORTHO05D007089 2.8e-221 772.3 682 59.7
MELO3C012156.2 Cucumis melo HOM05D005523 ORTHO05D007089 1.1e-220 770.4 690 59.0
TPR.G34024 Trifolium pratense HOM05D005523 ORTHO05D007089 4.5e-219 765.0 637 61.5
THA.LOC104805203 Tarenaya hassleriana HOM05D005523 ORTHO05D007089 1.7e-218 763.1 622 62.4
arahy.Tifrunner.gnm1.ann1.5T11RT Arachis hypogaea HOM05D005523 ORTHO05D007089 1.4e-217 760.0 667 60.3
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 1.4e-217 760.0 628 61.8
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 1.9e-217 759.6 630 61.9
arahy.Tifrunner.gnm1.ann1.1A68HA Arachis hypogaea HOM05D005523 ORTHO05D007089 5.5e-217 758.1 657 60.9
Solyc05g012200.3 Solanum lycopersicum HOM05D005523 ORTHO05D007089 1.2e-216 756.9 663 59.4
Thhalv10003838m.g Eutrema salsugineum HOM05D005523 ORTHO05D007089 1.6e-216 756.5 634 60.7
A06p43010 Brassica napus HOM05D005523 ORTHO05D007089 2.7e-216 755.7 628 61.8
PGSC0003DMG400028314 Solanum tuberosum HOM05D005523 ORTHO05D007089 1.0e-215 753.8 663 60.2
EL10Ac6g15006 Beta vulgaris HOM05D005523 ORTHO05D007089 2.3e-215 752.7 673 59.4
Ca_18798_v3 Cicer arietinum L. HOM05D005523 ORTHO05D007089 3.0e-215 752.3 639 60.7
SalBow2G2481 Salvia bowleyana HOM05D005523 ORTHO05D007089 3.3e-214 748.8 678 59.1
Peaxi162Scf00175g00035 Petunia axillaris HOM05D005523 ORTHO05D007089 9.7e-214 747.3 660 60.5
AUR62003091 Chenopodium quinoa HOM05D005523 ORTHO05D007089 3.7e-213 745.3 632 59.5
AT2G03667 Arabidopsis thaliana HOM05D005523 ORTHO05D007089 1.1e-212 743.8 627 60.1
Carub.0005s0279 Capsella rubella HOM05D005523 ORTHO05D007089 2.4e-212 742.7 629 60.6
CAN.G707.6 Capsicum annuum HOM05D005523 ORTHO05D007089 2.4e-212 742.7 662 59.5
AL5G13440 Arabidopsis lyrata HOM05D005523 ORTHO05D007089 4.1e-212 741.9 630 60.2
Sp2g14490 Schrenkiella parvula HOM05D005523 ORTHO05D007089 5.3e-212 741.5 636 59.9
Nn4g23450 Nelumbo nucifera HOM05D005523 ORTHO05D007089 2.0e-211 739.6 716 57.1
CARHR145990 Cardamine hirsuta HOM05D005523 ORTHO05D007089 2.6e-211 739.2 633 60.5
Hund25171 Selenicereus undatus HOM05D005523 ORTHO05D007089 4.5e-211 738.4 670 59.0
Aqoxy3G00520 Aquilegia oxysepala HOM05D005523 ORTHO05D007089 2.2e-210 736.1 697 57.5
Manes.05G109800 Manihot esculenta HOM05D005523 ORTHO05D007089 3.8e-210 735.3 632 61.6
Migut.L01183 Erythranthe guttata HOM05D005523 ORTHO05D007089 7.2e-209 731.1 668 58.4
Sopen05g007030 Solanum pennellii HOM05D005523 ORTHO05D007089 6.1e-208 728.0 559 64.8
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 3.0e-207 725.7 619 61.9
Cc11_g11910 Coffea canephora HOM05D005523 ORTHO05D007089 3.9e-207 725.3 679 57.7
PSO478G5042 Papaver somniferum HOM05D005523 ORTHO05D007089 5.1e-207 724.9 668 57.5
HanXRQChr17g0552771 Helianthus annuus HOM05D005523 ORTHO05D007089 2.6e-206 722.6 658 58.8
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 5.7e-206 721.5 618 59.2
vmacro10430 Vaccinium macrocarpon HOM05D005523 ORTHO05D007089 1.3e-205 720.3 683 56.8
PSO017G3752 Papaver somniferum HOM05D005523 ORTHO05D007089 1.7e-205 719.9 668 57.2
Nitab4.5_0007061g0020 Nicotiana tabacum HOM05D005523 ORTHO05D007089 4.1e-204 715.3 663 58.1
ECA234G2689 Erigeron canadensis HOM05D005523 ORTHO05D007089 2.9e-202 709.1 657 58.8
Oeu021803.1 Olea europaea HOM05D005523 ORTHO05D007089 3.8e-202 708.8 622 59.0
Rhsim09G0126700 Rhododendron simsii HOM05D005523 ORTHO05D007089 5.0e-202 708.4 656 57.5
Lsat_1_v5_gn_4_11761 Lactuca sativa HOM05D005523 ORTHO05D007089 5.5e-201 704.9 653 58.8
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 2.8e-197 692.6 647 57.0
AUR62007908 Chenopodium quinoa HOM05D005523 ORTHO05D007089 5.2e-191 671.8 634 55.7
Cc03_g11190 Coffea canephora HOM05D005523 ORTHO05D007089 2.0e-190 669.8 545 63.3
Nitab4.5_0000231g0170 Nicotiana tabacum HOM05D005523 ORTHO05D007089 2.8e-189 666.0 661 56.7
PGR119G1690 Punica granatum HOM05D005523 ORTHO05D007089 3.5e-187 659.1 653 55.7
HPP92_001825 Vanilla planifolia HOM05D005523 ORTHO05D007089 7.2e-185 651.4 649 53.6
Lj6A778G61 Lonicera japonica HOM05D005523 ORTHO05D007089 9.4e-185 651.0 747 49.9
Sc14g0007970 Simmondsia chinensis HOM05D005523 ORTHO05D007089 8.0e-184 647.9 623 55.2
SGA_v2.0_scaffold16G07795 Striga asiatica HOM05D005523 ORTHO05D007089 1.3e-178 630.6 661 51.7
unitig_26.g10286 Utricularia gibba HOM05D005523 ORTHO05D007089 7.3e-169 598.2 642 53.0
CSS0034602 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 9.5e-169 597.8 416 71.4
Eucgr.G02442 Eucalyptus grandis HOM05D005523 ORTHO05D007089 1.6e-163 580.5 439 67.9
TAR374G1461 Trochodendron aralioides HOM05D005523 ORTHO05D007089 4.0e-159 565.8 444 66.9
Zm00001eb029510 Zea mays HOM05D005523 ORTHO05D007089 5.2e-159 565.5 558 54.3
Gohir.A12G160700 Gossypium hirsutum HOM05D005523 ORTHO05D007089 1.6e-155 553.9 399 70.7
Pp3c13_5080 Physcomitrium patens HOM05D005523 ORTHO05D007089 1.6e-155 553.9 683 45.7
SMO364G0955 Selaginella moellendorffii HOM05D005523 ORTHO05D007089 2.8e-152 543.1 608 50.2
AagrBONN_evm.TU.Sc2ySwM_228.676 Anthoceros agrestis HOM05D005523 ORTHO05D007089 4.7e-152 542.3 639 47.6
VMungo0251G0731 Vigna mungo HOM05D005523 ORTHO05D007089 4.8e-128 462.6 282 79.8
MBI19_g25293_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 6.4e-125 452.2 626 44.9
Oeu021804.1 Olea europaea HOM05D005523 ORTHO05D007089 7.9e-123 445.3 465 51.4
Mapoly0013s0146 Marchantia polymorpha HOM05D005523 ORTHO05D007089 1.3e-120 438.0 509 46.6
Actinidia28650 Actinidia chinensis HOM05D005523 ORTHO05D007089 2.4e-111 407.1 317 65.9
ClCG05G023660 Citrullus lanatus HOM05D005523 ORTHO05D007089 1.9e-105 387.5 454 48.7
Actinidia36738 Actinidia chinensis HOM05D005523 ORTHO05D007089 2.9e-101 373.6 261 73.6
RcHm_v2.0_Chr7g0182531 Rosa chinensis HOM05D005523 ORTHO05D007089 4.1e-95 353.2 181 96.7
CDE10G0904 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 3.4e-94 350.1 263 68.1
ATR0177G042 Amborella trichopoda HOM05D005523 ORTHO05D007089 1.4e-92 344.7 562 40.4
PRCOL_00003408 Prasinoderma coloniale HOM05D005523 ORTHO05D007089 5.5e-92 342.8 640 34.1
VMungo0251G1186 Vigna mungo HOM05D005523 ORTHO05D007089 6.7e-90 335.9 378 48.1
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 1.1e-87 328.6 195 80.5
MBI19_g44450_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 1.8e-87 327.8 263 68.8
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 2.4e-87 327.4 406 48.0
Actinidia14169 Actinidia chinensis HOM05D005523 ORTHO05D007089 1.2e-83 315.1 326 52.8
CBR_g50115 Chara braunii HOM05D005523 ORTHO05D007089 1.8e-79 301.2 390 43.3
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 1.1e-76 292.0 359 47.1
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 9.4e-76 288.9 359 46.5
Lsat_1_v5_gn_5_70240 Lactuca sativa HOM05D005523 ORTHO05D007089 5.0e-69 266.5 187 73.3
Lsat_1_v5_gn_7_112061 Lactuca sativa HOM05D005523 ORTHO05D007089 1.1e-68 265.4 313 51.8
Lsat_1_v5_gn_5_143020 Lactuca sativa HOM05D005523 ORTHO05D007089 3.2e-68 263.8 183 71.0
Cre07.g321050 Chlamydomonas reinhardtii HOM05D005523 ORTHO05D007089 1.5e-65 255.0 364 40.7
Cpa.g.sc1.134 Carica papaya HOM05D005523 ORTHO05D007089 7.5e-65 252.7 150 78.7
Actinidia12916 Actinidia chinensis HOM05D005523 ORTHO05D007089 2.2e-64 251.1 141 87.2
CDE10G0400 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 6.8e-58 229.6 365 37.5
BcaB03g12091 Brassica carinata HOM05D005523 ORTHO05D007089 2.7e-54 217.6 130 79.2
Cpa.g.sc1.132 Carica papaya HOM05D005523 ORTHO05D007089 2.9e-48 197.6 462 32.3
CSS0024141 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 1.5e-36 158.7 194 46.4
CSS0004547 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 4.3e-28 130.6 180 42.8
Os12g0574900 Oryza sativa ssp. japonica HOM05D005523 ORTHO05D007089 1.3e-24 119.0 212 36.8
Lsat_1_v5_gn_7_82480 Lactuca sativa HOM05D005523 ORTHO05D007089 6.4e-24 116.7 152 49.3
CSS0023178 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 1.9e-23 115.2 118 50.8
EL10Ac6g15009 Beta vulgaris HOM05D005523 ORTHO05D007089 2.4e-23 114.8 208 36.1
TAR374G1311 Trochodendron aralioides HOM05D005523 ORTHO05D007089 4.6e-22 110.5 208 34.1
SEGI_10872 Sequoiadendron giganteum HOM05D005523 ORTHO05D007089 4.3e-20 104.0 107 47.7
CAN.G553.8 Capsicum annuum HOM05D001766 ORTHO05D043404 2.6e-17 94.7 108 50.0
CSS0028074 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D026295 1.9e-15 88.6 118 41.5
Cpa.g.sc1.135 Carica papaya HOM05D005523 ORTHO05D007089 3.2e-15 87.8 53 84.9
HanXRQChr15g0470871 Helianthus annuus HOM05D005523 ORTHO05D007089 7.1e-15 86.7 81 50.6
CAN.G602.9 Capsicum annuum HOM05D005523 ORTHO05D007089 3.3e-12 77.8 52 71.2
HanXRQChr16g0520621 Helianthus annuus HOM05D005523 ORTHO05D007089 2.2e-08 65.1 53 58.5
MCO01G357 Micromonas commoda HOM05D001481 ORTHO05D001865 2.7e-06 58.2 210 26.7


User provided reference genes

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