Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 3.0e-51 204.9 106 100.0
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 2.4e-48 195.3 106 96.2
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.4e-48 195.3 106 96.2
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 3.5e-47 191.4 106 94.3
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 3.8e-46 188.0 106 92.5
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 3.8e-46 188.0 106 92.5
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 1.1e-45 186.4 106 91.5
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.5e-45 185.3 106 93.4
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 2.3e-38 162.2 106 77.4
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 1.5e-37 159.5 106 74.5
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 4.7e-36 154.5 105 74.3
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 4.7e-36 154.5 105 72.4
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 4.7e-36 154.5 105 72.4
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 6.1e-36 154.1 106 72.6
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 8.0e-36 153.7 105 71.4
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 1.4e-35 152.9 106 75.5
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 1.4e-35 152.9 103 74.8
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 1.8e-35 152.5 114 70.2
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 2.3e-35 152.1 90 80.0
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 4.0e-35 151.4 105 70.5
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 5.2e-35 151.0 106 71.7
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 1.2e-34 149.8 103 71.8
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 1.2e-34 149.8 106 69.8
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 1.5e-34 149.4 105 72.4
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 2.0e-34 149.1 105 71.4
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 4.4e-34 147.9 106 71.7
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 5.7e-34 147.5 105 69.5
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 7.5e-34 147.1 103 68.9
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 1.7e-33 146.0 103 68.0
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 1.7e-33 146.0 103 68.0
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 1.7e-33 146.0 106 68.9
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 1.7e-33 146.0 108 70.4
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 2.2e-33 145.6 107 71.0
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 2.2e-33 145.6 103 68.0
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 2.2e-33 145.6 106 70.8
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 2.2e-33 145.6 91 76.9
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 2.9e-33 145.2 103 68.9
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 3.7e-33 144.8 105 69.5
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 4.9e-33 144.4 103 68.0
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 6.4e-33 144.1 102 68.6
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 6.4e-33 144.1 91 76.9
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 8.3e-33 143.7 105 66.7
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 1.1e-32 143.3 106 68.9
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 1.4e-32 142.9 107 68.2
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 1.8e-32 142.5 108 67.6
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 2.4e-32 142.1 109 67.9
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 2.4e-32 142.1 119 64.7
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 3.2e-32 141.7 103 66.0
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 3.2e-32 141.7 107 69.2
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 3.2e-32 141.7 105 67.6
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 3.2e-32 141.7 103 66.0
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 5.4e-32 141.0 103 68.9
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 5.4e-32 141.0 103 68.9
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 7.0e-32 140.6 106 67.9
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 9.2e-32 140.2 105 67.6
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 9.2e-32 140.2 94 73.4
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 1.2e-31 139.8 106 67.9
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 1.6e-31 139.4 106 65.1
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 2.0e-31 139.0 106 67.0
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 4.6e-31 137.9 106 65.1
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 5.9e-31 137.5 107 66.4
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 7.8e-31 137.1 106 66.0
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 1.0e-30 136.7 107 67.3
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 1.3e-30 136.3 107 65.4
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 1.7e-30 136.0 105 66.7
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 1.7e-30 136.0 103 65.0
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 2.3e-30 135.6 105 63.8
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 2.3e-30 135.6 106 63.2
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 2.3e-30 135.6 106 64.2
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 2.3e-30 135.6 107 63.6
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 3.0e-30 135.2 106 63.2
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 3.0e-30 135.2 106 64.2
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 3.0e-30 135.2 107 66.4
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 3.0e-30 135.2 107 66.4
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 3.9e-30 134.8 107 68.2
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 5.0e-30 134.4 106 62.3
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 5.0e-30 134.4 106 62.3
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 5.0e-30 134.4 107 63.6
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 5.0e-30 134.4 84 76.2
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 6.6e-30 134.0 107 68.2
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 6.6e-30 134.0 90 74.4
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 6.6e-30 134.0 91 73.6
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 1.5e-29 132.9 106 62.3
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 1.5e-29 132.9 106 62.3
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 1.5e-29 132.9 106 62.3
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.9e-29 132.5 92 67.4
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 2.5e-29 132.1 106 61.3
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 2.5e-29 132.1 107 64.5
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 2.5e-29 132.1 106 64.2
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 4.3e-29 131.3 106 61.3
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 4.3e-29 131.3 114 59.6
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 5.6e-29 131.0 106 62.3
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 9.5e-29 130.2 105 61.0
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 9.5e-29 130.2 106 63.2
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 9.5e-29 130.2 103 63.1
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 1.2e-28 129.8 106 60.4
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 1.2e-28 129.8 105 57.1
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 2.8e-28 128.6 103 62.1
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 3.6e-28 128.3 106 59.4
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 8.0e-28 127.1 87 67.8
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 8.0e-28 127.1 106 62.3
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 8.0e-28 127.1 93 71.0
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 1.8e-27 125.9 86 69.8
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 1.8e-27 125.9 127 55.9
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 3.1e-27 125.2 125 54.4
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 5.2e-27 124.4 99 59.6
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 5.2e-27 124.4 92 65.2
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 5.2e-27 124.4 92 65.2
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 1.2e-26 123.2 106 62.3
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 1.2e-26 123.2 96 60.4
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 4.4e-26 121.3 92 63.0
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 7.5e-26 120.6 103 57.3
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 7.5e-26 120.6 107 59.8
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 1.3e-25 119.8 93 65.6
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 1.7e-25 119.4 93 67.7
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 3.7e-25 118.2 92 63.0
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 6.4e-25 117.5 107 56.1
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 6.4e-25 117.5 92 62.0
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 8.3e-25 117.1 89 62.9
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 4.1e-24 114.8 94 61.7
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 4.1e-24 114.8 89 65.2
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 9.2e-24 113.6 92 63.0
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 9.2e-24 113.6 106 55.7
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 2.0e-23 112.5 92 62.0
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.3e-22 109.8 102 58.8
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 2.3e-22 109.0 89 60.7
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 3.9e-22 108.2 93 60.2
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 1.9e-21 105.9 92 62.0
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 2.5e-21 105.5 74 73.0
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 2.5e-21 105.5 106 51.9
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 3.1e-19 98.6 74 66.2
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 5.2e-19 97.8 74 68.9
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 4.4e-18 94.7 73 65.8
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 3.2e-16 88.6 83 55.4
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 3.2e-16 88.6 63 69.8
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 5.4e-16 87.8 62 74.2
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 1.2e-15 86.7 103 45.6
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 6.0e-15 84.3 66 62.1
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 6.0e-15 84.3 55 67.3
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.7e-14 82.8 61 65.6
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 6.6e-14 80.9 108 44.4
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 1.5e-13 79.7 58 67.2
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 5.6e-13 77.8 59 71.2
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 2.6e-10 68.9 70 62.9
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 3.4e-10 68.6 65 58.5
FAN19G2356 Fragaria x ananassa HOM05D029494 ORTHO05D035663 6.4e-09 64.3 42 81.0
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 2.7e-07 58.9 68 45.6


User provided reference genes

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