Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0508 Fragaria x ananassa HOM05D006025 ORTHO05D008547 6.9e-168 594.0 315 100.0
FvH4_4g32070 Fragaria vesca HOM05D006025 ORTHO05D008547 5.7e-162 574.3 315 96.5
FAN07G0827 Fragaria x ananassa HOM05D006025 ORTHO05D008547 4.8e-161 571.2 317 95.9
FAN12G1990 Fragaria x ananassa HOM05D006025 ORTHO05D008547 5.0e-158 561.2 315 94.9
RcHm_v2.0_Chr4g0440761 Rosa chinensis HOM05D006025 ORTHO05D008547 6.9e-144 514.2 320 86.9
Prupe.1G267200 Prunus persica HOM05D006025 ORTHO05D008547 1.0e-126 457.2 327 78.3
MD16G1079500 Malus domestica HOM05D006025 ORTHO05D008547 1.7e-118 429.9 324 75.3
MD13G1079600 Malus domestica HOM05D006025 ORTHO05D008547 7.0e-112 407.9 327 72.5
Thecc.02G232800 Theobroma cacao HOM05D006025 ORTHO05D008547 3.8e-110 402.1 317 69.4
Dinv34195 Davidia involucrata HOM05D006025 ORTHO05D008547 3.3e-109 399.1 265 80.4
CANSAT78G1034 Cannabis sativa HOM05D006025 ORTHO05D008547 2.1e-108 396.4 323 68.4
COL.COLO4_36182 Corchorus olitorius HOM05D006025 ORTHO05D008547 2.8e-108 396.0 319 69.6
Manes.05G096000 Manihot esculenta HOM05D006025 ORTHO05D008547 1.0e-107 394.0 324 67.9
Actinidia31175 Actinidia chinensis HOM05D006025 ORTHO05D008547 2.0e-106 389.8 295 72.9
Cfa009042 Carpinus fangiana HOM05D006025 ORTHO05D008547 7.5e-106 387.9 316 70.3
Gorai.009G347000 Gossypium raimondii HOM05D006025 ORTHO05D008547 3.2e-104 382.5 325 67.4
QL03p065944 Quercus lobata HOM05D006025 ORTHO05D008547 4.1e-104 382.1 315 69.2
CiPaw.05G140400 Carya illinoinensis HOM05D006025 ORTHO05D008547 5.4e-104 381.7 316 68.4
Rhsim12G0129700 Rhododendron simsii HOM05D006025 ORTHO05D008547 3.5e-103 379.0 302 71.9
Gohir.D05G323300 Gossypium hirsutum HOM05D006025 ORTHO05D008547 5.9e-103 378.3 325 66.5
Medtr5g037600 Medicago truncatula HOM05D006025 ORTHO05D008547 5.9e-103 378.3 315 66.7
Sabra10G0030400 Salix brachista HOM05D006025 ORTHO05D008547 1.0e-102 377.5 257 76.7
PGR119G0173 Punica granatum HOM05D006025 ORTHO05D008547 1.7e-102 376.7 285 73.3
Gohir.A05G321100 Gossypium hirsutum HOM05D006025 ORTHO05D008547 6.6e-102 374.8 324 66.4
Atru.chr11.1861 Acer truncatum HOM05D006025 ORTHO05D008547 8.6e-102 374.4 320 67.2
Ciclev10032129m.g Citrus clementina HOM05D006025 ORTHO05D008547 1.5e-101 373.6 246 78.0
GSVIVG01020079001 Vitis vinifera HOM05D006025 ORTHO05D008547 1.5e-101 373.6 280 72.5
Lj2g0002167 Lotus japonicus HOM05D006025 ORTHO05D008547 3.3e-101 372.5 246 78.9
Potri.010G034400 Populus trichocarpa HOM05D006025 ORTHO05D008547 3.3e-101 372.5 252 77.0
Sc11g0001660 Simmondsia chinensis HOM05D006025 ORTHO05D008547 3.6e-100 369.0 327 66.7
CsaV3_5G032300 Cucumis sativus L. HOM05D006025 ORTHO05D008547 4.7e-100 368.6 282 70.9
CAN.G27.7 Capsicum annuum HOM05D006025 ORTHO05D008547 8.0e-100 367.9 246 78.9
Glyma.01G040500 Glycine max HOM05D006025 ORTHO05D008547 1.1e-99 367.5 326 63.5
Phvul.002G080900 Phaseolus vulgaris HOM05D006025 ORTHO05D008547 1.8e-99 366.7 323 64.1
vmacro16324 Vaccinium macrocarpon HOM05D006025 ORTHO05D008547 1.8e-99 366.7 348 63.2
MELO3C012062.2 Cucumis melo HOM05D006025 ORTHO05D008547 5.2e-99 365.2 261 73.9
Sed0022227 Sechium edule HOM05D006025 ORTHO05D008547 1.2e-98 364.0 313 65.8
Migut.E00118 Erythranthe guttata HOM05D006025 ORTHO05D008547 1.5e-98 363.6 282 70.6
Lj6A795T74 Lonicera japonica HOM05D006025 ORTHO05D008547 2.0e-98 363.2 307 66.8
ClCG05G024630 Citrullus lanatus HOM05D006025 ORTHO05D008547 2.6e-98 362.8 310 65.5
TWI18G0579 Tripterygium wilfordii HOM05D006025 ORTHO05D008547 4.4e-98 362.1 325 61.8
Lalb_Chr05g0217521 Lupinus albus HOM05D006025 ORTHO05D008547 5.8e-98 361.7 322 63.4
Nitab4.5_0000679g0100 Nicotiana tabacum HOM05D006025 ORTHO05D008547 7.5e-98 361.3 239 78.2
VMungo1215G1908 Vigna mungo HOM05D006025 ORTHO05D008547 1.7e-97 360.1 307 65.1
TPR.G26717 Trifolium pratense HOM05D006025 ORTHO05D008547 3.7e-97 359.0 246 76.0
Cc11_g13550 Coffea canephora HOM05D006025 ORTHO05D008547 6.4e-97 358.2 265 73.2
Hund25274 Selenicereus undatus HOM05D006025 ORTHO05D008547 6.4e-97 358.2 308 67.2
EL10Ac6g13142 Beta vulgaris HOM05D006025 ORTHO05D008547 1.1e-96 357.5 297 65.0
Cpa.g.sc73.14 Carica papaya HOM05D006025 ORTHO05D008547 1.1e-96 357.5 319 64.3
Duzib268G1145 Durio zibethinus HOM05D006025 ORTHO05D008547 2.4e-96 356.3 293 67.6
Migut.L01348 Erythranthe guttata HOM05D006025 ORTHO05D008547 2.4e-96 356.3 290 67.6
Ca_04692_v3 Cicer arietinum L. HOM05D006025 ORTHO05D008547 4.1e-96 355.5 323 63.8
SalBow8G3437 Salvia bowleyana HOM05D006025 ORTHO05D008547 4.1e-96 355.5 306 66.3
Thhalv10004613m.g Eutrema salsugineum HOM05D006025 ORTHO05D008547 2.7e-95 352.8 321 62.6
TAR481G0011 Trochodendron aralioides HOM05D006025 ORTHO05D008547 4.6e-95 352.1 330 62.4
Carub.0005s0158 Capsella rubella HOM05D006025 ORTHO05D008547 1.3e-94 350.5 326 62.6
arahy.Tifrunner.gnm1.ann1.1ZL8TB Arachis hypogaea HOM05D006025 ORTHO05D008547 2.5e-93 346.3 331 60.7
arahy.Tifrunner.gnm1.ann1.V5YJYF Arachis hypogaea HOM05D006025 ORTHO05D008547 7.3e-93 344.7 329 59.9
AL5G11850 Arabidopsis lyrata HOM05D006025 ORTHO05D008547 1.6e-92 343.6 327 61.5
Psat2g115440 Pisum sativum HOM05D006025 ORTHO05D008547 1.6e-92 343.6 323 60.7
Sp2g13810 Schrenkiella parvula HOM05D006025 ORTHO05D008547 4.7e-92 342.0 323 60.7
Sopen05g002930 Solanum pennellii HOM05D006025 ORTHO05D008547 4.7e-92 342.0 260 71.5
THA.LOC104805137 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 8.1e-92 341.3 324 60.2
A09p23920 Brassica napus HOM05D006025 ORTHO05D008547 1.1e-91 340.9 319 59.6
AT2G02590 Arabidopsis thaliana HOM05D006025 ORTHO05D008547 2.3e-91 339.7 327 61.8
BolC7t43841H Brassica oleracea HOM05D006025 ORTHO05D008547 3.1e-91 339.3 232 76.3
BraA09t37996Z Brassica rapa HOM05D006025 ORTHO05D008547 3.1e-91 339.3 321 60.1
Lsat_1_v5_gn_3_49700 Lactuca sativa HOM05D006025 ORTHO05D008547 3.1e-91 339.3 270 68.9
DCAR_024490 Daucus carota HOM05D006025 ORTHO05D008547 5.2e-91 338.6 214 81.3
Aqoxy3G00786 Aquilegia oxysepala HOM05D006025 ORTHO05D008547 6.8e-91 338.2 288 65.3
BcaC06g31223 Brassica carinata HOM05D006025 ORTHO05D008547 1.5e-90 337.0 320 60.0
Nn4g23031 Nelumbo nucifera HOM05D006025 ORTHO05D008547 1.5e-90 337.0 339 60.2
HanXRQChr15g0478181 Helianthus annuus HOM05D006025 ORTHO05D008547 2.6e-90 336.3 300 63.3
A06p43550 Brassica napus HOM05D006025 ORTHO05D008547 7.5e-90 334.7 249 72.3
Aa31LG2G7560 Aethionema arabicum HOM05D006025 ORTHO05D008547 1.3e-89 334.0 323 61.0
Haze_12072 Corylus avellana HOM05D006025 ORTHO05D008547 1.3e-89 334.0 289 67.5
MSTRG.7831 Avicennia marina HOM05D006025 ORTHO05D008547 2.2e-89 333.2 298 65.4
BraA06t27240Z Brassica rapa HOM05D006025 ORTHO05D008547 2.2e-89 333.2 232 75.9
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 4.9e-89 332.0 274 66.1
BcaC06g34048 Brassica carinata HOM05D006025 ORTHO05D008547 8.3e-89 331.3 320 59.1
C07p33300 Brassica napus HOM05D006025 ORTHO05D008547 1.1e-88 330.9 320 59.1
BcaC04g21520 Brassica carinata HOM05D006025 ORTHO05D008547 3.2e-88 329.3 314 59.6
C09p30780 Brassica napus HOM05D006025 ORTHO05D008547 1.2e-87 327.4 241 71.4
PGSC0003DMG400017619 Solanum tuberosum HOM05D006025 ORTHO05D008547 2.1e-87 326.6 319 61.1
Oeu044566.1 Olea europaea HOM05D006025 ORTHO05D008547 2.7e-87 326.2 285 67.7
BolC9t55941H Brassica oleracea HOM05D006025 ORTHO05D008547 3.5e-87 325.9 236 72.0
HanXRQChr17g0544581 Helianthus annuus HOM05D006025 ORTHO05D008547 6.0e-87 325.1 247 71.7
CARHR145110 Cardamine hirsuta HOM05D006025 ORTHO05D008547 7.8e-87 324.7 318 59.1
AUR62026262 Chenopodium quinoa HOM05D006025 ORTHO05D008547 1.0e-86 324.3 219 75.8
Nitab4.5_0002969g0040 Nicotiana tabacum HOM05D006025 ORTHO05D008547 1.3e-86 323.9 246 71.5
PSO478G1322 Papaver somniferum HOM05D006025 ORTHO05D008547 2.3e-86 323.2 273 66.3
CSS0050443 Camellia sinensis var. sinensis HOM05D006025 ORTHO05D008547 5.1e-86 322.0 198 82.8
MBI04_g22196_MAGBIO Magnolia biondii HOM05D006025 ORTHO05D008547 1.5e-85 320.5 199 79.9
ATR0665G167 Amborella trichopoda HOM05D006025 ORTHO05D008547 2.5e-85 319.7 275 65.5
Peaxi162Scf00209g00517 Petunia axillaris HOM05D006025 ORTHO05D008547 2.1e-84 316.6 246 70.7
AUR62026454 Chenopodium quinoa HOM05D006025 ORTHO05D008547 4.4e-82 308.9 217 76.5
ECA246G2177 Erigeron canadensis HOM05D006025 ORTHO05D008547 1.1e-80 304.3 197 80.2
Eucgr.B02589 Eucalyptus grandis HOM05D006025 ORTHO05D008547 1.1e-80 304.3 206 75.7
SalBow2G1916 Salvia bowleyana HOM05D006025 ORTHO05D008547 1.2e-79 300.8 313 57.5
SGA_v2.0_scaffold87G26972 Striga asiatica HOM05D006025 ORTHO05D008547 1.7e-78 297.0 318 54.7
Os03g0800500 Oryza sativa ssp. japonica HOM05D006025 ORTHO05D008547 5.1e-78 295.4 203 72.9
BcaB07g30697 Brassica carinata HOM05D006025 ORTHO05D008547 6.6e-78 295.0 293 60.4
unitig_62.g23684 Utricularia gibba HOM05D006025 ORTHO05D008547 6.2e-76 288.5 280 58.2
SEGI_16485 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 9.6e-69 264.6 248 56.0
Zm00001eb212770 Zea mays HOM05D006025 ORTHO05D008547 9.0e-67 258.1 199 65.8
AagrBONN_evm.TU.Sc2ySwM_117.678 Anthoceros agrestis HOM05D006025 ORTHO05D008547 7.9e-63 245.0 195 62.1
Mapoly0001s0092 Marchantia polymorpha HOM05D006025 ORTHO05D008547 7.9e-63 245.0 217 59.0
CBR_g39595 Chara braunii HOM05D006025 ORTHO05D008547 1.4e-59 234.2 199 57.3
SMO147G0037 Selaginella moellendorffii HOM05D006025 ORTHO05D008547 9.0e-59 231.5 202 55.4
Pp3c22_2360 Physcomitrium patens HOM05D006025 ORTHO05D008547 3.0e-54 216.5 206 53.4
HPP92_018837 Vanilla planifolia HOM05D006025 ORTHO05D008547 8.7e-54 214.9 150 72.0
CDE07G0470 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 2.6e-50 203.4 148 66.2
CDE06G2488 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 3.1e-35 153.3 178 48.9
SEGI_34054 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 2.0e-34 150.6 110 68.2
Glyma.02G024100 Glycine max HOM05D006025 ORTHO05D008547 3.4e-34 149.8 207 49.8
Solyc05g006965.1 Solanum lycopersicum HOM05D006025 ORTHO05D008547 7.9e-31 138.7 180 49.4
Hma1.2p1_0808F.1_g221580 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 1.1e-19 101.7 79 70.9
Hma1.2p1_0513F.1_g169540 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 1.6e-18 97.8 79 69.6
DCAR_001229 Daucus carota HOM05D006025 ORTHO05D008547 3.3e-13 80.1 50 82.0
Zm00001eb151370 Zea mays HOM05D006025 ORTHO05D443914 1.7e-09 67.8 55 67.3
Dinv16285 Davidia involucrata HOM05D000027 ORTHO05D000500 9.4e-08 62.0 125 40.8


User provided reference genes

Program Settings