Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0434 Fragaria x ananassa HOM05D006303 ORTHO05D008007 1.3e-183 646.4 358 100.0
FAN07G1279 Fragaria x ananassa HOM05D006303 ORTHO05D008007 7.8e-176 620.5 358 95.3
FvH4_4g15080 Fragaria vesca HOM05D006303 ORTHO05D008007 2.4e-172 609.0 359 95.3
FAN12G1910 Fragaria x ananassa HOM05D006303 ORTHO05D008007 6.9e-172 607.4 359 95.0
FAN17G3084 Fragaria x ananassa HOM05D006303 ORTHO05D008007 5.4e-169 597.8 358 93.9
Manes.15G026800 Manihot esculenta HOM05D006303 ORTHO05D008007 8.9e-79 298.1 370 58.9
CiPaw.01G163800 Carya illinoinensis HOM05D006303 ORTHO05D008007 1.5e-78 297.4 375 57.3
Manes.03G181100 Manihot esculenta HOM05D006303 ORTHO05D008007 9.8e-78 294.7 372 58.1
Medtr5g005960 Medicago truncatula HOM05D006303 ORTHO05D008007 3.1e-71 273.1 368 56.5
CiPaw.02G095400 Carya illinoinensis HOM05D006303 ORTHO05D008007 8.9e-71 271.6 383 57.4
Sabra10G0052900 Salix brachista HOM05D006303 ORTHO05D008007 2.6e-70 270.0 377 53.8
Duzib052G1015 Durio zibethinus HOM05D006303 ORTHO05D008007 3.4e-70 269.6 376 54.3
Nn1g02244 Nelumbo nucifera HOM05D006303 ORTHO05D008007 2.2e-69 266.9 369 54.5
QL06p003344 Quercus lobata HOM05D006303 ORTHO05D008007 2.9e-69 266.5 378 56.3
Cc03_g03480 Coffea canephora HOM05D006303 ORTHO05D008007 1.9e-68 263.8 382 53.7
Nn4g26265 Nelumbo nucifera HOM05D006303 ORTHO05D008007 1.7e-66 257.3 358 54.7
Thecc.04G227500 Theobroma cacao HOM05D006303 ORTHO05D008007 3.0e-66 256.5 384 52.6
Potri.010G090500 Populus trichocarpa HOM05D006303 ORTHO05D008007 6.6e-66 255.4 378 52.9
Hma1.2p1_0517F.1_g171030 Hydrangea macrophylla HOM05D006303 ORTHO05D008007 1.9e-65 253.8 377 54.9
Lj1g0001361 Lotus japonicus HOM05D006303 ORTHO05D008007 1.9e-65 253.8 386 52.3
COL.COLO4_06194 Corchorus olitorius HOM05D006303 ORTHO05D008007 2.5e-65 253.4 379 50.9
Sed0009344 Sechium edule HOM05D006303 ORTHO05D008007 5.6e-65 252.3 368 51.9
TWI09G0488 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 9.5e-65 251.5 375 54.1
Haze_00877 Corylus avellana HOM05D006303 ORTHO05D008007 1.2e-64 251.1 364 54.4
VMungo1215G3149 Vigna mungo HOM05D006303 ORTHO05D008007 6.2e-64 248.8 371 52.0
Cfa015618 Carpinus fangiana HOM05D006303 ORTHO05D008007 8.1e-64 248.4 359 54.3
Psat4g211440 Pisum sativum HOM05D006303 ORTHO05D008007 3.1e-63 246.5 371 49.3
TWI53G0528 Tripterygium wilfordii HOM05D006303 ORTHO05D008007 4.0e-63 246.1 341 55.7
Glyma.11G004400 Glycine max HOM05D006303 ORTHO05D008007 6.8e-63 245.4 395 50.1
Aqoxy5G00502 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 1.2e-62 244.6 370 54.3
Oeu034363.1 Olea europaea HOM05D006303 ORTHO05D008007 1.5e-62 244.2 370 54.1
Peaxi162Scf00437g00041 Petunia axillaris HOM05D006303 ORTHO05D008007 2.6e-62 243.4 390 51.5
ClCG06G006020 Citrullus lanatus HOM05D006303 ORTHO05D008007 4.4e-62 242.7 376 49.2
Cpa.g.sc147.34 Carica papaya HOM05D006303 ORTHO05D008007 5.8e-62 242.3 359 49.6
Duzib212G0816 Durio zibethinus HOM05D006303 ORTHO05D008007 1.7e-61 240.7 389 49.9
Gorai.006G237600 Gossypium raimondii HOM05D006303 ORTHO05D008007 2.2e-61 240.4 365 51.0
PGSC0003DMG400031852 Solanum tuberosum HOM05D006303 ORTHO05D008007 2.9e-61 240.0 371 52.0
Gohir.A09G214600 Gossypium hirsutum HOM05D006303 ORTHO05D008007 4.9e-61 239.2 365 51.0
Gohir.D09G217100 Gossypium hirsutum HOM05D006303 ORTHO05D008007 6.4e-61 238.8 365 51.2
MELO3C014489.2 Cucumis melo HOM05D006303 ORTHO05D008007 8.4e-61 238.4 360 50.8
Sopen09g030560 Solanum pennellii HOM05D006303 ORTHO05D008007 8.4e-61 238.4 371 53.1
MSTRG.4016 Avicennia marina HOM05D006303 ORTHO05D008007 1.1e-60 238.0 376 51.9
Solyc09g075750.1 Solanum lycopersicum HOM05D006303 ORTHO05D008007 3.2e-60 236.5 376 52.9
CANSAT78G1152 Cannabis sativa HOM05D006303 ORTHO05D008007 9.2e-60 235.0 408 49.5
TAR365G0083 Trochodendron aralioides HOM05D006303 ORTHO05D008007 1.6e-59 234.2 357 52.9
Dinv38426 Davidia involucrata HOM05D006303 ORTHO05D008007 2.1e-59 233.8 359 52.4
Phvul.002G047200 Phaseolus vulgaris HOM05D006303 ORTHO05D008007 2.7e-59 233.4 371 49.9
Lsat_1_v5_gn_5_148441 Lactuca sativa HOM05D006303 ORTHO05D008007 4.6e-59 232.6 348 52.3
Ca_24387_v3 Cicer arietinum L. HOM05D006303 ORTHO05D008007 2.3e-58 230.3 326 51.8
Oeu004490.1 Olea europaea HOM05D006303 ORTHO05D008007 2.3e-58 230.3 362 50.0
Atru.chr4.2516 Acer truncatum HOM05D006303 ORTHO05D008007 5.1e-58 229.2 380 49.7
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 8.7e-58 228.4 342 51.2
Nitab4.5_0000260g0090 Nicotiana tabacum HOM05D006303 ORTHO05D008007 8.7e-58 228.4 377 51.7
TPR.G37902 Trifolium pratense HOM05D006303 ORTHO05D008007 1.9e-57 227.3 362 49.4
Nitab4.5_0007531g0010 Nicotiana tabacum HOM05D006303 ORTHO05D008007 6.2e-56 222.2 372 51.3
MD16G1188900 Malus domestica HOM05D006303 ORTHO05D008007 1.1e-55 221.5 354 51.7
ECA234G3153 Erigeron canadensis HOM05D006303 ORTHO05D008007 2.4e-55 220.3 352 51.4
MD13G1188500 Malus domestica HOM05D006303 ORTHO05D008007 2.4e-55 220.3 366 50.5
CsaV3_6G038260 Cucumis sativus L. HOM05D006303 ORTHO05D008007 3.1e-55 219.9 380 48.4
DCAR_027185 Daucus carota HOM05D006303 ORTHO05D008007 1.2e-54 218.0 338 48.8
MSTRG.24747 Avicennia marina HOM05D006303 ORTHO05D008007 3.4e-54 216.5 354 48.9
PGR004G2192 Punica granatum HOM05D006303 ORTHO05D008007 5.8e-54 215.7 369 48.2
Dinv44508 Davidia involucrata HOM05D006303 ORTHO05D008007 1.1e-52 211.5 362 49.4
Ciclev10005353m.g Citrus clementina HOM05D006303 ORTHO05D008007 6.0e-51 205.7 380 47.1
BcaB04g19742 Brassica carinata HOM05D006303 ORTHO05D008007 4.3e-49 199.5 356 47.5
arahy.Tifrunner.gnm1.ann1.RSQ2PF Arachis hypogaea HOM05D006303 ORTHO05D008007 2.1e-48 197.2 343 49.3
Ah.04g154500 Amaranthus hybridus HOM05D006303 ORTHO05D008007 2.8e-48 196.8 369 48.5
Prupe.1G155600 Prunus persica HOM05D006303 ORTHO05D008007 4.8e-48 196.1 346 47.7
BolC9t53571H Brassica oleracea HOM05D006303 ORTHO05D008007 3.1e-47 193.4 353 49.0
THA.LOC104802760 Tarenaya hassleriana HOM05D006303 ORTHO05D008007 4.0e-47 193.0 343 48.4
BcaC04g23610 Brassica carinata HOM05D006303 ORTHO05D008007 4.5e-46 189.5 353 48.2
BcaNung03972 Brassica carinata HOM05D006303 ORTHO05D008007 2.9e-45 186.8 340 48.8
Lsat_1_v5_gn_7_65920 Lactuca sativa HOM05D006303 ORTHO05D008007 2.9e-45 186.8 358 45.0
Nn2g13850 Nelumbo nucifera HOM05D006303 ORTHO05D008007 4.9e-45 186.0 286 50.0
C09p06490 Brassica napus HOM05D006303 ORTHO05D008007 6.4e-45 185.7 343 47.8
A09p05910 Brassica napus HOM05D006303 ORTHO05D008007 5.4e-44 182.6 343 47.8
A06p36730 Brassica napus HOM05D006303 ORTHO05D008007 2.7e-43 180.3 337 49.6
BraA06t26595Z Brassica rapa HOM05D006303 ORTHO05D008007 2.7e-43 180.3 337 49.6
C07p41810 Brassica napus HOM05D006303 ORTHO05D008007 3.5e-43 179.9 340 48.2
SalBow5G2627 Salvia bowleyana HOM05D006303 ORTHO05D008007 1.0e-42 178.3 373 44.5
PSO384G0046 Papaver somniferum HOM05D006303 ORTHO05D008007 2.3e-42 177.2 396 42.9
BcaNung02811 Brassica carinata HOM05D006303 ORTHO05D008007 3.0e-42 176.8 340 47.9
BolC7t44712H Brassica oleracea HOM05D006303 ORTHO05D008007 3.0e-42 176.8 340 47.9
SalBow5G4234 Salvia bowleyana HOM05D006303 ORTHO05D008007 3.0e-42 176.8 377 44.0
Aqoxy2G03353 Aquilegia oxysepala HOM05D006303 ORTHO05D008007 3.9e-42 176.4 317 44.5
BraA09t36233Z Brassica rapa HOM05D006303 ORTHO05D008007 7.4e-41 172.2 339 47.2
Sc13g0004270 Simmondsia chinensis HOM05D006303 ORTHO05D008007 4.8e-40 169.5 368 41.6
Thhalv10004558m.g Eutrema salsugineum HOM05D006303 ORTHO05D008007 6.2e-40 169.1 347 43.8
Carub.0006s2405 Capsella rubella HOM05D006303 ORTHO05D008007 1.7e-37 161.0 358 43.9
AT5G26230 Arabidopsis thaliana HOM05D006303 ORTHO05D008007 2.2e-37 160.6 367 43.1
AL6G38240 Arabidopsis lyrata HOM05D006303 ORTHO05D008007 6.4e-37 159.1 354 41.2
CARHR187140 Cardamine hirsuta HOM05D006303 ORTHO05D008007 8.4e-37 158.7 346 41.9
Sp2g21520 Schrenkiella parvula HOM05D006303 ORTHO05D008007 3.2e-36 156.8 355 41.7
EL10As3g23363 Beta vulgaris HOM05D006303 ORTHO05D008007 2.1e-35 154.1 381 42.0
PSO675G0548 Papaver somniferum HOM05D006303 ORTHO05D008007 2.7e-35 153.7 375 42.1
PSO717G0040 Papaver somniferum HOM05D006303 ORTHO05D008007 2.7e-35 153.7 365 41.9
SalBow2G0078 Salvia bowleyana HOM05D006303 ORTHO05D008007 1.0e-34 151.8 360 40.3
arahy.Tifrunner.gnm1.ann1.S8XWMG Arachis hypogaea HOM05D006303 ORTHO05D008007 3.9e-34 149.8 337 43.0
ClCG05G005270 Citrullus lanatus HOM05D006303 ORTHO05D008007 3.9e-34 149.8 345 42.0
MELO3C006546.2 Cucumis melo HOM05D006303 ORTHO05D008007 1.5e-33 147.9 345 42.6
CsaV3_3G013490 Cucumis sativus L. HOM05D006303 ORTHO05D008007 7.4e-33 145.6 349 43.0
MBI17_g34761_MAGBIO Magnolia biondii HOM05D006303 ORTHO05D008007 2.8e-32 143.7 343 41.1
arahy.Tifrunner.gnm1.ann1.KMTU0V Arachis hypogaea HOM05D006303 ORTHO05D008007 3.7e-32 143.3 337 42.1
PSO135G0705 Papaver somniferum HOM05D006303 ORTHO05D008007 2.2e-29 134.0 374 36.4
Sed0019333 Sechium edule HOM05D006303 ORTHO05D008007 1.4e-28 131.3 357 40.6
Migut.G00317 Erythranthe guttata HOM05D006303 ORTHO05D008007 4.2e-28 129.8 258 44.6
Nn3g18018 Nelumbo nucifera HOM05D006303 ORTHO05D008007 3.5e-27 126.7 156 57.7
AUR62038095 Chenopodium quinoa HOM05D006303 ORTHO05D008007 8.7e-26 122.1 180 47.8
HPP92_003595 Vanilla planifolia HOM05D006303 ORTHO05D008007 1.9e-25 120.9 362 38.7
Aa31LG11G10320 Aethionema arabicum HOM05D006303 ORTHO05D008007 2.5e-25 120.6 235 46.0
Rhsim04G0205200 Rhododendron simsii HOM05D006303 ORTHO05D008007 5.7e-25 119.4 172 50.6
Zm00001eb350820 Zea mays HOM05D006303 ORTHO05D008007 7.4e-25 119.0 370 37.8
SGA_v2.0_scaffold10G05105 Striga asiatica HOM05D006303 ORTHO05D008007 4.5e-22 109.8 233 43.3
GSVIVG01017928001 Vitis vinifera HOM05D006303 ORTHO05D008007 5.9e-22 109.4 349 32.1
Os05g0390600 Oryza sativa ssp. japonica HOM05D006303 ORTHO05D008007 3.8e-21 106.7 350 35.4
Actinidia40170 Actinidia chinensis HOM05D006303 ORTHO05D008007 3.6e-19 100.1 177 48.6
Lj6C598T9 Lonicera japonica HOM05D006303 ORTHO05D008007 2.0e-17 94.4 94 63.8
SGA_v2.0_scaffold257G45734 Striga asiatica HOM05D006303 ORTHO05D008007 2.8e-16 90.5 227 38.8
AUR62038636 Chenopodium quinoa HOM05D006303 ORTHO05D008007 1.4e-15 88.2 91 58.2
Nn3g18017 Nelumbo nucifera HOM05D006303 ORTHO05D008007 3.2e-12 77.0 99 64.6
SEGI_38862 Sequoiadendron giganteum HOM05D006303 ORTHO05D008007 1.8e-10 71.2 398 30.9
ATR0626G102 Amborella trichopoda HOM05D006303 ORTHO05D008007 3.9e-10 70.1 213 34.7
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 6.3e-08 62.8 371 28.6
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 6.3e-08 62.8 307 28.0
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 1.4e-07 61.6 308 27.6
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 2.4e-07 60.8 350 26.3
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 2.4e-07 60.8 350 26.3
Nn2g12462 Nelumbo nucifera HOM05D006303 ORTHO05D008007 4.1e-07 60.1 91 46.2
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 5.3e-07 59.7 374 27.5
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 7.0e-07 59.3 314 27.1
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 9.1e-07 58.9 362 28.2
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 1.5e-06 58.2 367 26.4
CSS0012314 Camellia sinensis var. sinensis HOM05D002337 ORTHO05D002412 2.0e-06 57.8 52 55.8
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 2.6e-06 57.4 325 28.9
C04p10660 Brassica napus HOM05D002337 ORTHO05D002412 3.5e-06 57.0 64 53.1
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 3.5e-06 57.0 351 26.5
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 4.5e-06 56.6 364 27.2
THA.LOC104823436 Tarenaya hassleriana HOM05D002337 ORTHO05D002412 4.5e-06 56.6 57 59.6
BcaB02g09285 Brassica carinata HOM05D002337 ORTHO05D002412 5.9e-06 56.2 64 53.1
BraA05t19825Z Brassica rapa HOM05D002337 ORTHO05D002412 5.9e-06 56.2 64 51.6
Carub.0004s1928 Capsella rubella HOM05D002337 ORTHO05D002412 5.9e-06 56.2 73 49.3
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 5.9e-06 56.2 351 26.5
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 5.9e-06 56.2 95 43.2
BolC4t22658H Brassica oleracea HOM05D002337 ORTHO05D002412 7.7e-06 55.8 64 51.6
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 7.7e-06 55.8 348 27.0
TAR623G1231 Trochodendron aralioides HOM05D002337 ORTHO05D002412 7.7e-06 55.8 59 57.6


User provided reference genes

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