Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0421 Fragaria x ananassa HOM05D012998 ORTHO05D007556 6.3e-115 417.5 224 100.0
FAN07G1843 Fragaria x ananassa HOM05D012998 ORTHO05D025560 2.3e-40 169.9 95 88.4
FAN13G1116 Fragaria x ananassa HOM05D012998 ORTHO05D025560 5.1e-40 168.7 95 87.4
FvH4_5g03070 Fragaria vesca HOM05D012998 ORTHO05D007556 6.6e-40 168.3 95 87.4
FvH4_6g06532 Fragaria vesca HOM05D012998 ORTHO05D025560 8.7e-40 167.9 156 62.8
FAN02G3419 Fragaria x ananassa HOM05D012998 ORTHO05D025560 1.8e-37 160.2 95 85.3
FAN04G2282 Fragaria x ananassa HOM05D012998 ORTHO05D025560 2.2e-35 153.3 95 82.1
FvH4_3g22630 Fragaria vesca HOM05D006489 ORTHO05D007556 4.6e-33 145.6 86 83.7
FAN07G2259 Fragaria x ananassa HOM05D001210 ORTHO05D001036 1.3e-32 144.1 226 49.1
FAN17G0637 Fragaria x ananassa HOM05D001210 ORTHO05D001036 2.3e-32 143.3 226 48.7
FAN12G1751 Fragaria x ananassa HOM05D001210 ORTHO05D001036 6.7e-32 141.7 226 48.7
FAN25G3282 Fragaria x ananassa HOM05D006489 ORTHO05D007556 8.7e-32 141.4 86 82.6
FAN18G1394 Fragaria x ananassa HOM05D012998 ORTHO05D007556 1.5e-31 140.6 115 67.8
FvH4_4g14182 Fragaria vesca HOM05D001210 ORTHO05D001036 2.5e-31 139.8 226 48.2
FAN16G1490 Fragaria x ananassa HOM05D006489 ORTHO05D007556 1.6e-30 137.1 86 80.2
FAN21G0022 Fragaria x ananassa HOM05D006489 ORTHO05D007556 1.4e-29 134.0 89 79.8
RcHm_v2.0_Chr5g0039401 Rosa chinensis HOM05D006489 ORTHO05D007556 4.9e-27 125.6 88 70.5
FAN16G2204 Fragaria x ananassa HOM05D012998 ORTHO05D007556 6.5e-27 125.2 72 86.1
RcHm_v2.0_Chr4g0419021 Rosa chinensis HOM05D001210 ORTHO05D001036 3.5e-25 119.4 218 42.2
FAN09G1475 Fragaria x ananassa HOM05D012998 ORTHO05D007556 6.3e-22 108.6 83 69.9
Prupe.1G148600 Prunus persica HOM05D001210 ORTHO05D001036 6.3e-22 108.6 226 38.9
FvH4_1g28411 Fragaria vesca HOM05D012998 ORTHO05D000014 3.1e-21 106.3 81 69.1
FAN13G0601 Fragaria x ananassa HOM05D000335 ORTHO05D007556 1.6e-17 94.0 74 70.3
Cfa015554 Carpinus fangiana HOM05D001210 ORTHO05D001036 2.1e-17 93.6 214 36.4
Atru.chr4.2670 Acer truncatum HOM05D001210 ORTHO05D001036 4.6e-17 92.4 224 36.6
Haze_00994 Corylus avellana HOM05D006658 ORTHO05D008515 6.1e-17 92.0 209 36.4
Glyma.17G019200 Glycine max HOM05D001210 ORTHO05D001036 6.1e-17 92.0 217 35.9
Glyma.07G255100 Glycine max HOM05D001210 ORTHO05D001036 1.0e-16 91.3 217 35.5
Ciclev10006056m.g Citrus clementina HOM05D001210 ORTHO05D001036 3.0e-16 89.7 220 35.5
CiPaw.01G157800 Carya illinoinensis HOM05D001210 ORTHO05D001036 8.7e-16 88.2 209 34.4
THA.LOC104818786 Tarenaya hassleriana HOM05D001210 ORTHO05D001036 8.7e-16 88.2 214 34.6
BcaB01g05285 Brassica carinata HOM05D001210 ORTHO05D001036 1.1e-15 87.8 220 35.9
AT5G18970 Arabidopsis thaliana HOM05D001210 ORTHO05D001036 1.9e-15 87.0 212 34.9
A03p09230 Brassica napus HOM05D001210 ORTHO05D001036 1.9e-15 87.0 221 35.3
Thhalv10014847m.g Eutrema salsugineum HOM05D001210 ORTHO05D001036 1.9e-15 87.0 212 35.8
TPR.G18408 Trifolium pratense HOM05D001210 ORTHO05D001036 2.5e-15 86.7 218 33.9
C03p10770 Brassica napus HOM05D001210 ORTHO05D001036 3.3e-15 86.3 220 35.0
Carub.0006s1727 Capsella rubella HOM05D001210 ORTHO05D001036 4.3e-15 85.9 212 35.4
AL6G30320 Arabidopsis lyrata HOM05D001210 ORTHO05D001036 5.7e-15 85.5 212 35.4
Manes.07G121700 Manihot esculenta HOM05D001210 ORTHO05D001036 5.7e-15 85.5 217 35.5
BolC3t13550H Brassica oleracea HOM05D001210 ORTHO05D001036 7.4e-15 85.1 212 35.8
BcaB08g36631 Brassica carinata HOM05D001210 ORTHO05D001036 9.7e-15 84.7 211 35.1
Sp6g25420 Schrenkiella parvula HOM05D001210 ORTHO05D001036 9.7e-15 84.7 212 34.9
Aa31LG11G10760 Aethionema arabicum HOM05D001210 ORTHO05D001036 1.3e-14 84.3 217 32.7
BcaB01g04881 Brassica carinata HOM05D001210 ORTHO05D001036 1.6e-14 84.0 212 34.9
A10p20710 Brassica napus HOM05D001210 ORTHO05D001036 1.6e-14 84.0 211 34.6
CARHR194030 Cardamine hirsuta HOM05D001210 ORTHO05D001036 1.6e-14 84.0 212 34.9
BcaC04g18635 Brassica carinata HOM05D001210 ORTHO05D001036 2.2e-14 83.6 211 34.1
C09p57530 Brassica napus HOM05D001210 ORTHO05D001036 2.2e-14 83.6 211 34.1
BolC9t58622H Brassica oleracea HOM05D001210 ORTHO05D001036 2.2e-14 83.6 211 34.1
CANSAT78G0816 Cannabis sativa HOM05D001210 ORTHO05D001036 2.2e-14 83.6 215 35.3
Peaxi162Scf00095g00719 Petunia axillaris HOM05D001210 ORTHO05D001036 2.2e-14 83.6 219 31.1
Lalb_Chr12g0196271 Lupinus albus HOM05D001210 ORTHO05D001036 2.8e-14 83.2 213 34.3
Phvul.003G106300 Phaseolus vulgaris HOM05D001210 ORTHO05D001036 2.8e-14 83.2 216 36.1
Psat4g032560 Pisum sativum HOM05D001210 ORTHO05D001036 2.8e-14 83.2 211 34.6
Ca_21581_v3 Cicer arietinum L. HOM05D001210 ORTHO05D001036 3.7e-14 82.8 208 35.1
CsaV3_3G013850 Cucumis sativus L. HOM05D001210 ORTHO05D001036 4.8e-14 82.4 216 35.2
BraA10t44134Z Brassica rapa HOM05D001210 ORTHO05D001036 8.2e-14 81.6 211 34.1
QL06p005913 Quercus lobata HOM05D001210 ORTHO05D001036 1.1e-13 81.3 207 33.8
VMungo1215G2672 Vigna mungo HOM05D001210 ORTHO05D001036 1.1e-13 81.3 211 35.1
Sabra08G0160900 Salix brachista HOM05D001210 ORTHO05D001036 1.4e-13 80.9 223 32.7
Gohir.D10G147400 Gossypium hirsutum HOM05D001210 ORTHO05D001036 1.8e-13 80.5 215 34.0
Gorai.011G164500 Gossypium raimondii HOM05D001210 ORTHO05D001036 1.8e-13 80.5 215 34.0
Migut.G00253 Erythranthe guttata HOM05D001210 ORTHO05D001036 2.4e-13 80.1 215 33.5
Actinidia00077 Actinidia chinensis HOM05D001210 ORTHO05D001036 3.1e-13 79.7 220 30.5
Medtr4g117600 Medicago truncatula HOM05D001210 ORTHO05D001036 5.3e-13 79.0 211 33.2
COL.COLO4_21621 Corchorus olitorius HOM05D001210 ORTHO05D001036 1.2e-12 77.8 216 33.3
FAN04G1536 Fragaria x ananassa HOM05D004809 ORTHO05D006732 1.2e-12 77.8 117 45.3
Thecc.04G219000 Theobroma cacao HOM05D001210 ORTHO05D001036 1.2e-12 77.8 215 33.5
MSTRG.10022 Avicennia marina HOM05D001210 ORTHO05D001036 1.5e-12 77.4 215 32.1
Sed0023151 Sechium edule HOM05D001210 ORTHO05D001036 2.0e-12 77.0 213 33.3
Lj4g0027082 Lotus japonicus HOM05D001210 ORTHO05D001036 3.4e-12 76.3 216 32.9
MD03G1201600 Malus domestica HOM05D006489 ORTHO05D007556 4.5e-12 75.9 108 46.3
Prupe.4G212300 Prunus persica HOM05D006489 ORTHO05D007556 4.5e-12 75.9 107 45.8
Nitab4.5_0000059g0010 Nicotiana tabacum HOM05D000887 ORTHO05D000908 5.9e-12 75.5 211 32.2
Gohir.A09G200600 Gossypium hirsutum HOM05D001210 ORTHO05D001036 7.7e-12 75.1 210 34.3
Gorai.006G218200 Gossypium raimondii HOM05D001210 ORTHO05D001036 7.7e-12 75.1 210 34.3
Hma1.2p1_2418F.1_g321800 Hydrangea macrophylla HOM05D001210 ORTHO05D001036 7.7e-12 75.1 219 33.3
CAN.G522.9 Capsicum annuum HOM05D001210 ORTHO05D001036 1.0e-11 74.7 213 31.5
Cc03_g02930 Coffea canephora HOM05D001210 ORTHO05D001036 1.3e-11 74.3 218 31.2
arahy.Tifrunner.gnm1.ann1.PFE7S7 Arachis hypogaea HOM05D001210 ORTHO05D001036 1.7e-11 73.9 212 32.5
Cpa.g.sc16.51 Carica papaya HOM05D001210 ORTHO05D001036 1.7e-11 73.9 213 32.9
ClCG05G005530 Citrullus lanatus HOM05D001210 ORTHO05D001036 1.7e-11 73.9 217 35.9
Lalb_Chr13g0304031 Lupinus albus HOM05D001210 ORTHO05D001036 1.7e-11 73.9 216 30.6
Potri.008G200000 Populus trichocarpa HOM05D001210 ORTHO05D001036 1.7e-11 73.9 215 33.0
MD16G1181200 Malus domestica HOM05D001210 ORTHO05D001036 2.2e-11 73.6 47 74.5
Nitab4.5_0003070g0010 Nicotiana tabacum HOM05D000887 ORTHO05D000908 2.2e-11 73.6 211 31.3
Rhsim02G0018100 Rhododendron simsii HOM05D001210 ORTHO05D001036 2.9e-11 73.2 223 30.9
Oeu037665.1 Olea europaea HOM05D001210 ORTHO05D001036 5.0e-11 72.4 217 30.0
Solyc01g080290.3 Solanum lycopersicum HOM05D001210 ORTHO05D001036 5.0e-11 72.4 226 33.2
Sopen01g032080 Solanum pennellii HOM05D001210 ORTHO05D001036 6.5e-11 72.0 217 31.3
PGSC0003DMG400004354 Solanum tuberosum HOM05D001210 ORTHO05D001036 1.1e-10 71.2 221 29.9
vmacro15293 Vaccinium macrocarpon HOM05D001210 ORTHO05D001036 1.4e-10 70.9 51 66.7
TWI73G0074 Tripterygium wilfordii HOM05D001210 ORTHO05D001036 5.5e-10 68.9 215 30.2
SGA_v2.0_scaffold237G43843 Striga asiatica HOM05D002372 ORTHO05D001029 9.4e-10 68.2 213 31.0
Duzib212G0681 Durio zibethinus HOM05D001210 ORTHO05D001036 1.2e-09 67.8 213 31.5
MBI17_g29608_MAGBIO Magnolia biondii HOM05D001210 ORTHO05D001036 1.6e-09 67.4 220 30.0
HanXRQChr01g0002991 Helianthus annuus HOM05D001210 ORTHO05D001036 2.1e-09 67.0 210 29.5
Lsat_1_v5_gn_8_110060 Lactuca sativa HOM05D001210 ORTHO05D001036 3.6e-09 66.2 224 28.1
CSS0020266 Camellia sinensis var. sinensis HOM05D001210 ORTHO05D001036 7.9e-09 65.1 222 30.6
Gohir.D09G194800 Gossypium hirsutum HOM05D001210 ORTHO05D001036 7.9e-09 65.1 202 33.2
Aqoxy2G03227 Aquilegia oxysepala HOM05D001210 ORTHO05D001036 1.0e-08 64.7 220 29.5
Eucgr.H03634 Eucalyptus grandis HOM05D001210 ORTHO05D001036 1.0e-08 64.7 49 65.3
unitig_899.g14402 Utricularia gibba HOM05D002181 ORTHO05D003287 1.4e-08 64.3 221 29.4
Sed0002873 Sechium edule HOM05D001210 ORTHO05D001036 1.8e-08 63.9 215 34.0
Hma1.2p1_0208F.1_g088300 Hydrangea macrophylla HOM05D000516 ORTHO05D000409 5.1e-08 62.4 48 62.5
Nn1g02129 Nelumbo nucifera HOM05D001210 ORTHO05D001036 5.1e-08 62.4 218 27.5
Hund02944 Selenicereus undatus HOM05D001210 ORTHO05D001036 6.7e-08 62.0 219 29.2
SGA_v2.0_scaffold166G38391 Striga asiatica HOM05D001210 ORTHO05D001036 8.8e-08 61.6 214 27.6
AUR62024640 Chenopodium quinoa HOM05D001210 ORTHO05D001036 1.1e-07 61.2 211 29.9
MD13G1180300 Malus domestica HOM05D001210 ORTHO05D001036 1.5e-07 60.8 39 74.4
GSVIVG01017867001 Vitis vinifera HOM05D001210 ORTHO05D001036 1.5e-07 60.8 212 29.7
Nitab4.5_0011175g0010 Nicotiana tabacum HOM05D006489 ORTHO05D007556 2.0e-07 60.5 91 41.8
QL08p010454 Quercus lobata HOM05D006489 ORTHO05D007556 2.6e-07 60.1 89 43.8
DCAR_002424 Daucus carota HOM05D001210 ORTHO05D001036 4.4e-07 59.3 49 57.1
ECA236G1677 Erigeron canadensis HOM05D001210 ORTHO05D001036 5.7e-07 58.9 212 29.7
TAR362G0536 Trochodendron aralioides HOM05D001210 ORTHO05D001036 7.4e-07 58.5 45 62.2
Nitab4.5_0001913g0140 Nicotiana tabacum HOM05D006489 ORTHO05D007556 9.7e-07 58.2 112 37.5
PGR004G1264 Punica granatum HOM05D001210 ORTHO05D001036 1.3e-06 57.8 45 64.4
PGR065G0007 Punica granatum HOM05D001210 ORTHO05D001036 1.3e-06 57.8 45 64.4
AUR62011793 Chenopodium quinoa HOM05D001210 ORTHO05D001036 1.7e-06 57.4 211 28.4
Potri.008G200300 Populus trichocarpa HOM05D001210 ORTHO05D001036 4.8e-06 55.8 203 30.0
EL10As5g23543 Beta vulgaris HOM05D001210 ORTHO05D001036 8.2e-06 55.1 217 27.6


User provided reference genes

Program Settings