Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0407 Fragaria x ananassa HOM05D019314 ORTHO05D029633 4.7e-46 187.6 99 100.0
FvH4_4g04600 Fragaria vesca HOM05D019314 ORTHO05D029633 1.1e-39 166.4 90 95.6
FAN12G3412 Fragaria x ananassa HOM05D019314 ORTHO05D029633 7.5e-36 153.7 92 90.2
FAN17G3086 Fragaria x ananassa HOM05D019314 ORTHO05D029633 1.7e-32 142.5 92 83.7
RcHm_v2.0_Chr4g0395371 Rosa chinensis HOM05D003410 ORTHO05D003881 2.3e-13 79.0 95 50.5
Cpa.g.sc87.22 Carica papaya HOM05D003410 ORTHO05D003881 7.1e-10 67.4 87 44.8
Lalb_Chr19g0128521 Lupinus albus HOM05D003410 ORTHO05D003881 7.8e-09 63.9 91 38.5
Prupe.1G047800 Prunus persica HOM05D003410 ORTHO05D003881 1.0e-08 63.5 90 44.4
Nn1g02957 Nelumbo nucifera HOM05D003410 ORTHO05D003881 1.3e-08 63.2 92 41.3
Sed0015699 Sechium edule HOM05D003410 ORTHO05D003881 1.3e-08 63.2 94 43.6
Cfa014780 Carpinus fangiana HOM05D003410 ORTHO05D003881 3.0e-08 62.0 87 44.8
Cfa021012 Carpinus fangiana HOM05D003410 ORTHO05D003881 3.0e-08 62.0 87 44.8
CANSAT78G1185 Cannabis sativa HOM05D003410 ORTHO05D003881 3.9e-08 61.6 91 42.9
Gohir.A08G192000 Gossypium hirsutum HOM05D003410 ORTHO05D003881 6.6e-08 60.8 78 44.9
Lalb_Chr03g0036961 Lupinus albus HOM05D003410 ORTHO05D003881 6.6e-08 60.8 91 39.6
Nn3g19777 Nelumbo nucifera HOM05D003410 ORTHO05D003881 8.6e-08 60.5 91 41.8
Ca_11898_v3 Cicer arietinum L. HOM05D003410 ORTHO05D003881 1.1e-07 60.1 72 45.8
MELO3C023044.2 Cucumis melo HOM05D003410 ORTHO05D003881 1.5e-07 59.7 94 40.4
CsaV3_2G012420 Cucumis sativus L. HOM05D003410 ORTHO05D003881 1.5e-07 59.7 94 40.4
TAR633G0988 Trochodendron aralioides HOM05D003410 ORTHO05D003881 1.5e-07 59.7 93 39.8
Duzib138G1667 Durio zibethinus HOM05D003410 ORTHO05D003881 2.5e-07 58.9 88 40.9
FvH4_2g20580 Fragaria vesca HOM05D003410 ORTHO05D003881 2.5e-07 58.9 76 44.7
FAN24G0274 Fragaria x ananassa HOM05D003410 ORTHO05D003881 2.5e-07 58.9 76 44.7
Os02g0496900 Oryza sativa ssp. japonica HOM05D003410 ORTHO05D003881 2.5e-07 58.9 87 40.2
Sed0011790 Sechium edule HOM05D003410 ORTHO05D003881 2.5e-07 58.9 94 41.5
TAR362G0673 Trochodendron aralioides HOM05D003410 ORTHO05D003881 2.5e-07 58.9 93 39.8
Actinidia39930 Actinidia chinensis HOM05D003410 ORTHO05D003881 3.3e-07 58.5 92 41.3
Haze_24698 Corylus avellana HOM05D003410 ORTHO05D003881 3.3e-07 58.5 78 42.3
MD13G1221200 Malus domestica HOM05D003410 ORTHO05D003881 3.3e-07 58.5 90 41.1
Manes.12G036200 Manihot esculenta HOM05D003410 ORTHO05D003881 3.3e-07 58.5 96 40.6
GSVIVG01028415001 Vitis vinifera HOM05D003410 ORTHO05D003881 3.3e-07 58.5 94 38.3
TAR365G0976 Trochodendron aralioides HOM05D003410 ORTHO05D003881 4.3e-07 58.2 97 39.2
Cfa002479 Carpinus fangiana HOM05D003410 ORTHO05D003881 5.6e-07 57.8 90 41.1
Gorai.004G222400 Gossypium raimondii HOM05D003410 ORTHO05D003881 5.6e-07 57.8 88 39.8
Manes.03G159000 Manihot esculenta HOM05D003410 ORTHO05D003881 5.6e-07 57.8 87 37.9
Sabra02G0195600 Salix brachista HOM05D003410 ORTHO05D003881 5.6e-07 57.8 97 38.1
GSVIVG01027914001 Vitis vinifera HOM05D003410 ORTHO05D003881 5.6e-07 57.8 76 43.4
Gohir.D08G210000 Gossypium hirsutum HOM05D003410 ORTHO05D003881 7.3e-07 57.4 88 39.8
MD00G1060300 Malus domestica HOM05D003410 ORTHO05D003881 7.3e-07 57.4 88 42.0
Prupe.8G216100 Prunus persica HOM05D003410 ORTHO05D003881 7.3e-07 57.4 95 37.9
TWI73G1070 Tripterygium wilfordii HOM05D003410 ORTHO05D003881 7.3e-07 57.4 91 39.6
FAN27G2598 Fragaria x ananassa HOM05D003410 ORTHO05D003881 9.5e-07 57.0 76 43.4
Carub.0001s0322 Capsella rubella HOM05D003410 ORTHO05D003881 1.2e-06 56.6 68 44.1
CiPaw.01G178000 Carya illinoinensis HOM05D003410 ORTHO05D003881 1.2e-06 56.6 87 41.4
Eucgr.K01430 Eucalyptus grandis HOM05D003410 ORTHO05D003881 1.2e-06 56.6 74 44.6
Pp3c24_1490 Physcomitrium patens HOM05D003410 ORTHO05D003881 1.2e-06 56.6 63 46.0
Potri.002G257200 Populus trichocarpa HOM05D003410 ORTHO05D003881 1.2e-06 56.6 97 37.1
THA.LOC104815972 Tarenaya hassleriana HOM05D003410 ORTHO05D003881 1.2e-06 56.6 87 36.8
Thecc.04G263900 Theobroma cacao HOM05D003410 ORTHO05D003881 1.2e-06 56.6 87 37.9
TWI53G1829 Tripterygium wilfordii HOM05D003410 ORTHO05D003881 1.2e-06 56.6 75 42.7
COL.COLO4_10574 Corchorus olitorius HOM05D003410 ORTHO05D003881 1.6e-06 56.2 88 37.5
Duzib151G0669 Durio zibethinus HOM05D003410 ORTHO05D003881 1.6e-06 56.2 78 42.3
FAN15G2918 Fragaria x ananassa HOM05D003410 ORTHO05D003881 1.6e-06 56.2 76 43.4
Lj6g0010954 Lotus japonicus HOM05D003410 ORTHO05D003881 1.6e-06 56.2 91 39.6
Medtr1g045505 Medicago truncatula HOM05D003410 ORTHO05D003881 1.6e-06 56.2 75 41.3
Thecc.01G251100 Theobroma cacao HOM05D003410 ORTHO05D003881 1.6e-06 56.2 88 38.6
AT1G04070 Arabidopsis thaliana HOM05D003410 ORTHO05D003881 2.1e-06 55.8 82 39.0
CSS0024044 Camellia sinensis var. sinensis HOM05D003410 ORTHO05D003881 2.1e-06 55.8 82 37.8
Gorai.001G181300 Gossypium raimondii HOM05D003410 ORTHO05D003881 2.1e-06 55.8 59 45.8
MBI10_g35429_MAGBIO Magnolia biondii HOM05D003410 ORTHO05D003881 2.1e-06 55.8 72 41.7
Aa31LG5G3300 Aethionema arabicum HOM05D003410 ORTHO05D003881 2.8e-06 55.5 86 39.5
CANSAT01G0813 Cannabis sativa HOM05D003410 ORTHO05D003881 2.8e-06 55.5 96 39.6
CiPaw.03G270300 Carya illinoinensis HOM05D003410 ORTHO05D003881 2.8e-06 55.5 89 40.4
Ca_09650_v3 Cicer arietinum L. HOM05D003410 ORTHO05D003881 2.8e-06 55.5 70 44.3
Dinv27112 Davidia involucrata HOM05D006857 ORTHO05D008679 2.8e-06 55.5 73 43.8
Gohir.A07G151800 Gossypium hirsutum HOM05D003410 ORTHO05D003881 2.8e-06 55.5 59 45.8
Gohir.D07G158100 Gossypium hirsutum HOM05D003410 ORTHO05D003881 2.8e-06 55.5 59 45.8
TAR636G2865 Trochodendron aralioides HOM05D003410 ORTHO05D003881 2.8e-06 55.5 89 39.3
Aa31LG1G20770 Aethionema arabicum HOM05D003410 ORTHO05D003881 3.6e-06 55.1 79 36.7
QL06p020998 Quercus lobata HOM05D003410 ORTHO05D003881 3.6e-06 55.1 88 42.0
THA.LOC104801123 Tarenaya hassleriana HOM05D003410 ORTHO05D003881 3.6e-06 55.1 80 37.5
A06p47590 Brassica napus HOM05D003410 ORTHO05D003881 4.7e-06 54.7 87 39.1
CSS0029259 Camellia sinensis var. sinensis HOM05D003410 ORTHO05D003881 4.7e-06 54.7 92 39.1
Duzib133G1351 Durio zibethinus HOM05D003410 ORTHO05D003881 4.7e-06 54.7 88 38.6
Nitab4.5_0000326g0310 Nicotiana tabacum HOM05D003410 ORTHO05D003881 4.7e-06 54.7 72 44.4
Phvul.007G189500 Phaseolus vulgaris HOM05D003410 ORTHO05D003881 4.7e-06 54.7 87 39.1
Rhsim01G0260900 Rhododendron simsii HOM05D000074 ORTHO05D011471 4.7e-06 54.7 72 44.4
Sc13g0003120 Simmondsia chinensis HOM05D003410 ORTHO05D003881 4.7e-06 54.7 72 43.1
BcaC06g34608 Brassica carinata HOM05D003410 ORTHO05D003881 6.2e-06 54.3 87 37.9
C07p26530 Brassica napus HOM05D003410 ORTHO05D003881 6.2e-06 54.3 87 37.9
BolC7t43173H Brassica oleracea HOM05D003410 ORTHO05D003881 6.2e-06 54.3 87 37.9
BraA06t27627Z Brassica rapa HOM05D003410 ORTHO05D003881 6.2e-06 54.3 87 39.1
CSS0004045 Camellia sinensis var. sinensis HOM05D003410 ORTHO05D003881 6.2e-06 54.3 76 42.1
CARHR179430 Cardamine hirsuta HOM05D003410 ORTHO05D003881 6.2e-06 54.3 80 41.2
Migut.D00472 Erythranthe guttata HOM05D003410 ORTHO05D003881 6.2e-06 54.3 81 39.5
Nitab4.5_0009671g0040 Nicotiana tabacum HOM05D003410 ORTHO05D003881 6.2e-06 54.3 72 44.4
HanXRQChr11g0321361 Helianthus annuus HOM05D003410 ORTHO05D003881 8.1e-06 53.9 73 43.8
Lsat_1_v5_gn_0_8120 Lactuca sativa HOM05D003410 ORTHO05D003881 8.1e-06 53.9 73 43.8
Lj6E621T0 Lonicera japonica HOM05D003410 ORTHO05D003881 8.1e-06 53.9 55 49.1


User provided reference genes

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