Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.2e-186 655.6 352 100.0
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.7e-160 568.9 330 91.8
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 3.7e-146 521.9 304 88.5
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 1.3e-143 513.5 326 83.4
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 1.8e-132 476.5 327 78.3
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 1.8e-132 476.5 327 77.7
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.8e-116 423.3 239 90.8
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 9.3e-105 384.4 324 64.8
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 1.5e-102 377.1 324 63.9
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 3.3e-94 349.4 325 58.5
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 1.8e-92 343.6 328 59.1
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.7e-90 337.0 328 55.8
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 4.9e-90 335.5 328 55.5
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 8.4e-90 334.7 332 56.0
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.1e-89 334.3 328 55.5
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 2.5e-89 333.2 328 55.5
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 4.2e-89 332.4 326 55.2
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 9.3e-89 331.3 329 57.8
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 1.2e-88 330.9 328 56.1
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 2.1e-88 330.1 352 52.6
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 7.9e-88 328.2 328 54.9
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 1.0e-87 327.8 332 56.0
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 2.3e-87 326.6 329 55.3
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 6.7e-87 325.1 329 55.3
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 1.9e-86 323.6 227 73.6
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 3.3e-86 322.8 328 54.9
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 4.3e-86 322.4 328 54.9
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 7.4e-86 321.6 326 56.1
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 9.6e-86 321.2 328 52.7
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 6.3e-85 318.5 327 52.6
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.4e-84 316.6 328 54.6
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 2.4e-84 316.6 328 54.0
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 3.1e-84 316.2 328 53.4
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 6.9e-84 315.1 339 51.6
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 9.0e-84 314.7 335 52.2
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 9.0e-84 314.7 328 52.1
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 1.2e-83 314.3 330 54.2
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 4.5e-83 312.4 324 54.0
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 1.3e-82 310.8 330 53.9
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 8.4e-82 308.1 325 53.2
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 3.2e-81 306.2 328 52.7
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 3.2e-81 306.2 327 51.4
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 4.2e-81 305.8 328 54.6
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 1.2e-80 304.3 327 56.3
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 1.6e-80 303.9 331 53.2
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 1.6e-80 303.9 325 52.3
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 1.0e-79 301.2 317 51.1
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 1.8e-79 300.4 317 51.1
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 5.1e-79 298.9 325 50.2
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.5e-78 297.4 304 56.9
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 1.9e-78 297.0 325 53.8
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 1.9e-78 297.0 326 53.4
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 4.3e-78 295.8 326 51.5
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 5.7e-78 295.4 317 51.4
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 7.4e-78 295.0 313 52.4
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 2.2e-77 293.5 332 50.6
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 4.8e-77 292.4 266 58.3
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 2.4e-76 290.0 233 61.4
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 1.5e-75 287.3 330 49.4
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 2.0e-75 287.0 329 49.5
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 2.6e-75 286.6 329 49.5
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 5.0e-74 282.3 330 48.8
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 5.0e-74 282.3 330 48.8
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 5.0e-74 282.3 236 59.7
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 6.5e-74 282.0 326 48.2
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 1.9e-73 280.4 232 61.6
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 1.9e-73 280.4 329 48.0
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 1.9e-73 280.4 326 48.5
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 2.5e-73 280.0 320 49.4
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 2.5e-73 280.0 311 51.1
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 4.2e-73 279.3 332 48.2
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 5.5e-73 278.9 329 48.3
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 7.2e-73 278.5 251 58.2
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 6.1e-72 275.4 234 62.0
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 7.9e-72 275.0 231 61.9
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 1.4e-71 274.2 308 49.7
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 1.8e-71 273.9 218 63.3
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 3.9e-71 272.7 234 58.5
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 3.9e-71 272.7 264 55.7
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 5.1e-71 272.3 330 48.8
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 8.8e-71 271.6 306 51.6
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 1.1e-70 271.2 235 58.7
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 2.0e-70 270.4 238 59.2
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 4.3e-70 269.2 327 47.7
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 7.4e-70 268.5 331 48.6
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 4.8e-69 265.8 328 47.0
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 1.8e-68 263.8 316 48.4
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 1.8e-68 263.8 225 61.8
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 4.1e-68 262.7 329 46.8
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 6.9e-68 261.9 237 58.2
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 2.6e-67 260.0 320 47.5
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 1.3e-66 257.7 215 61.4
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 3.2e-65 253.1 328 46.3
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 1.2e-64 251.1 225 59.1
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 2.3e-63 246.9 210 62.9
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.4e-62 242.7 330 48.8
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 6.3e-61 238.8 243 54.3
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 1.2e-59 234.6 247 52.2
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.9e-57 227.3 234 54.3
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.9e-57 227.3 234 54.3
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 1.2e-56 224.6 234 52.1
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 1.6e-56 224.2 324 46.0
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 3.6e-56 223.0 330 41.8
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 8.0e-56 221.9 252 49.2
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 1.0e-55 221.5 324 45.1
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 1.8e-55 220.7 225 52.0
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 2.3e-55 220.3 332 42.2
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 4.0e-55 219.5 243 51.0
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 5.2e-55 219.2 276 46.4
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 3.5e-51 206.5 225 48.0
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 7.7e-51 205.3 182 57.7
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 1.7e-50 204.1 258 46.1
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 6.5e-50 202.2 305 43.0
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 1.9e-49 200.7 244 47.5
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 1.4e-47 194.5 229 46.7
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 6.3e-45 185.7 301 40.9
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 1.8e-44 184.1 147 62.6
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.1e-44 183.0 208 49.0
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 1.7e-42 177.6 234 44.4
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 2.2e-42 177.2 154 61.0
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 4.7e-40 169.5 195 48.7
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 1.8e-39 167.5 168 55.4
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 1.5e-38 164.5 136 59.6
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 3.4e-38 163.3 142 58.5
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 8.3e-37 158.7 144 59.7
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 2.0e-35 154.1 218 43.6
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 5.9e-35 152.5 205 44.4
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 2.8e-32 143.7 200 43.5
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 8.0e-32 142.1 143 55.9
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 1.8e-31 141.0 227 38.8
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 1.8e-31 141.0 119 58.8
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 2.3e-31 140.6 172 46.5
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 3.0e-31 140.2 162 49.4
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 2.7e-27 127.1 103 62.1
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 5.9e-27 125.9 89 69.7
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 7.8e-27 125.6 154 46.1
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.1e-23 113.6 114 55.3
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 6.4e-21 105.9 256 30.1
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 1.9e-20 104.4 65 72.3
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 5.2e-15 86.3 254 27.2
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 4.4e-14 83.2 199 32.7
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.2e-11 75.1 58 62.1
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 1.1e-09 68.6 50 70.0


User provided reference genes

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