Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0290 Fragaria x ananassa HOM05D005416 ORTHO05D026383 5.1e-35 150.6 79 100.0
FAN07G1459 Fragaria x ananassa HOM05D005416 ORTHO05D007956 2.4e-29 131.7 72 93.1
FAN17G2258 Fragaria x ananassa HOM05D005416 ORTHO05D007956 1.6e-28 129.0 72 93.1
RcHm_v2.0_Chr4g0443121 Rosa chinensis HOM05D005416 ORTHO05D007956 2.0e-23 112.1 72 81.9
MD16G1019300 Malus domestica HOM05D005416 ORTHO05D007956 1.7e-22 109.0 72 77.8
MD13G1020900 Malus domestica HOM05D005416 ORTHO05D007956 1.1e-21 106.3 72 75.0
COL.COLO4_16581 Corchorus olitorius HOM05D005416 ORTHO05D007956 1.1e-18 96.3 72 65.3
Eucgr.B02671 Eucalyptus grandis HOM05D005416 ORTHO05D007956 4.3e-18 94.4 72 68.1
Thecc.02G292000 Theobroma cacao HOM05D005416 ORTHO05D007956 5.6e-18 94.0 72 66.7
Haze_10888 Corylus avellana HOM05D005416 ORTHO05D026383 9.6e-18 93.2 67 67.2
Duzib251G0900 Durio zibethinus HOM05D005416 ORTHO05D007956 2.8e-17 91.7 72 63.9
TWI53G1568 Tripterygium wilfordii HOM05D005416 ORTHO05D007956 2.8e-17 91.7 71 70.4
CiPaw.06G051400 Carya illinoinensis HOM05D005416 ORTHO05D007956 4.8e-17 90.9 72 69.4
CANSAT01G1131 Cannabis sativa HOM05D005416 ORTHO05D007956 1.1e-16 89.7 72 63.9
arahy.Tifrunner.gnm1.ann1.B96KF5 Arachis hypogaea HOM05D005416 ORTHO05D007956 4.0e-16 87.8 72 63.9
QL03p035642 Quercus lobata HOM05D005416 ORTHO05D007956 5.3e-16 87.4 74 60.8
Gorai.008G168000 Gossypium raimondii HOM05D005416 ORTHO05D007956 9.0e-16 86.7 70 60.0
Sabra08G0102700 Salix brachista HOM05D005416 ORTHO05D007956 9.0e-16 86.7 72 61.1
Nn3g18354 Nelumbo nucifera HOM05D005416 ORTHO05D007956 1.2e-15 86.3 63 61.9
BcaC05g26502 Brassica carinata HOM05D005416 ORTHO05D007956 2.0e-15 85.5 75 54.7
BolC5t31280H Brassica oleracea HOM05D005416 ORTHO05D007956 2.0e-15 85.5 75 54.7
Gohir.A12G151900 Gossypium hirsutum HOM05D005416 ORTHO05D007956 2.0e-15 85.5 70 58.6
arahy.Tifrunner.gnm1.ann1.AF56D0 Arachis hypogaea HOM05D005416 ORTHO05D007956 2.6e-15 85.1 72 62.5
AT1G24610 Arabidopsis thaliana HOM05D005416 ORTHO05D007956 3.4e-15 84.7 73 57.5
vmacro23117 Vaccinium macrocarpon HOM05D005416 ORTHO05D007956 3.4e-15 84.7 63 65.1
A09p39010 Brassica napus HOM05D005416 ORTHO05D007956 4.5e-15 84.3 73 54.8
BraA09t39401Z Brassica rapa HOM05D005416 ORTHO05D007956 4.5e-15 84.3 73 54.8
C05p25520 Brassica napus HOM05D005416 ORTHO05D007956 5.8e-15 84.0 75 53.3
CARHR026460 Cardamine hirsuta HOM05D005416 ORTHO05D007956 5.8e-15 84.0 72 56.9
AL1G40300 Arabidopsis lyrata HOM05D005416 ORTHO05D007956 7.6e-15 83.6 73 56.2
PGSC0003DMG400009729 Solanum tuberosum HOM05D005416 ORTHO05D007956 7.6e-15 83.6 73 57.5
Potri.008G134200 Populus trichocarpa HOM05D005416 ORTHO05D007956 9.9e-15 83.2 72 59.7
BcaC05g26700 Brassica carinata HOM05D005416 ORTHO05D007956 1.3e-14 82.8 68 57.4
Thhalv10007532m.g Eutrema salsugineum HOM05D005416 ORTHO05D007956 2.2e-14 82.0 73 56.2
Cpa.g.sc2.205 Carica papaya HOM05D005416 ORTHO05D007956 2.9e-14 81.6 70 58.6
PGR102G2697 Punica granatum HOM05D005416 ORTHO05D007956 2.9e-14 81.6 71 60.6
Lalb_Chr16g0387601 Lupinus albus HOM05D005416 ORTHO05D007956 6.4e-14 80.5 73 60.3
Carub.0001s2548 Capsella rubella HOM05D005416 ORTHO05D007956 1.1e-13 79.7 68 54.4
MELO3C005273.2 Cucumis melo HOM05D005416 ORTHO05D007956 1.1e-13 79.7 75 61.3
Sp1g23160 Schrenkiella parvula HOM05D005416 ORTHO05D007956 1.1e-13 79.7 67 56.7
Sopen01g001400 Solanum pennellii HOM05D005416 ORTHO05D007956 1.1e-13 79.7 73 57.5
AUR62014156 Chenopodium quinoa HOM05D005416 ORTHO05D007956 1.9e-13 79.0 63 61.9
Lj4g0002826 Lotus japonicus HOM05D005416 ORTHO05D007956 2.4e-13 78.6 72 61.1
TAR371G0290 Trochodendron aralioides HOM05D005416 ORTHO05D007956 2.4e-13 78.6 83 53.0
GSVIVG01011666001 Vitis vinifera HOM05D005416 ORTHO05D007956 2.4e-13 78.6 74 60.8
CSS0046016 Camellia sinensis var. sinensis HOM05D005416 ORTHO05D007956 3.2e-13 78.2 64 60.9
CSS0013875 Camellia sinensis var. sinensis HOM05D005416 ORTHO05D007956 4.2e-13 77.8 64 60.9
THA.LOC104825565 Tarenaya hassleriana HOM05D005416 ORTHO05D007956 4.2e-13 77.8 73 57.5
AUR62038467 Chenopodium quinoa HOM05D005416 ORTHO05D007956 5.4e-13 77.4 63 60.3
Solyc01g005380.3 Solanum lycopersicum HOM05D005416 ORTHO05D007956 7.1e-13 77.0 73 54.8
Atru.chr11.944 Acer truncatum HOM05D005416 ORTHO05D007956 9.3e-13 76.6 76 52.6
Aa31LG7G9430 Aethionema arabicum HOM05D005416 ORTHO05D007956 9.3e-13 76.6 71 54.9
ClCG01G006540 Citrullus lanatus HOM05D005416 ORTHO05D007956 1.6e-12 75.9 75 60.0
Ciclev10015103m.g Citrus clementina HOM05D005416 ORTHO05D007956 2.7e-12 75.1 75 53.3
SGA_v2.0_scaffold139G35433 Striga asiatica HOM05D005416 ORTHO05D007956 2.7e-12 75.1 76 56.6
DCAR_030261 Daucus carota HOM05D005416 ORTHO05D007956 3.5e-12 74.7 72 52.8
Actinidia36630 Actinidia chinensis HOM05D005416 ORTHO05D007956 4.6e-12 74.3 64 59.4
Nitab4.5_0000922g0060 Nicotiana tabacum HOM05D005416 ORTHO05D007956 4.6e-12 74.3 68 58.8
TAR371G0369 Trochodendron aralioides HOM05D005416 ORTHO05D007956 4.6e-12 74.3 83 49.4
CsaV3_5G028150 Cucumis sativus L. HOM05D005416 ORTHO05D007956 6.0e-12 73.9 74 59.5
Glyma.08G045400 Glycine max HOM05D005416 ORTHO05D007956 1.3e-11 72.8 73 60.3
VMungo0251G2936 Vigna mungo HOM05D005416 ORTHO05D007956 1.3e-11 72.8 72 58.3
Cc11_g07140 Coffea canephora HOM05D005416 ORTHO05D007956 2.3e-11 72.0 73 56.2
Peaxi162Scf00655g00217 Petunia axillaris HOM05D005416 ORTHO05D007956 2.3e-11 72.0 73 56.2
Nitab4.5_0000198g0220 Nicotiana tabacum HOM05D005416 ORTHO05D007956 8.7e-11 70.1 73 52.1
HanXRQChr12g0362651 Helianthus annuus HOM05D005416 ORTHO05D007956 1.1e-10 69.7 62 56.5
Lsat_1_v5_gn_8_46201 Lactuca sativa HOM05D005416 ORTHO05D007956 1.5e-10 69.3 62 54.8
Lj3C865G4 Lonicera japonica HOM05D005416 ORTHO05D007956 1.9e-10 68.9 70 51.4
Phvul.002G320700 Phaseolus vulgaris HOM05D005416 ORTHO05D007956 3.3e-10 68.2 66 54.5
Migut.E00473 Erythranthe guttata HOM05D005416 ORTHO05D007956 4.3e-10 67.8 80 52.5
Medtr8g105200 Medicago truncatula HOM05D005416 ORTHO05D007956 4.3e-10 67.8 68 52.9
CDE05G0750 Ceratophyllum demersum HOM05D005416 ORTHO05D007956 7.4e-10 67.0 82 47.6
TPR.G27724 Trifolium pratense HOM05D005416 ORTHO05D007956 7.4e-10 67.0 71 52.1
Oeu044016.1 Olea europaea HOM05D005416 ORTHO05D007956 9.6e-10 66.6 76 55.3
Ah.03g137430 Amaranthus hybridus HOM05D005416 ORTHO05D007956 1.6e-09 65.9 71 47.9
COL.COLO4_02853 Corchorus olitorius HOM05D005416 ORTHO05D026383 1.6e-09 65.9 63 55.6
Hund24928 Selenicereus undatus HOM05D005416 ORTHO05D007956 1.6e-09 65.9 72 52.8
A09p38980 Brassica napus HOM05D005416 ORTHO05D007956 3.7e-09 64.7 73 45.2
SalBow2G1542 Salvia bowleyana HOM05D005416 ORTHO05D007956 4.8e-09 64.3 73 49.3
Lalb_Chr05g0222241 Lupinus albus HOM05D005416 ORTHO05D007956 6.2e-09 63.9 73 49.3
PSO478G1161 Papaver somniferum HOM05D005416 ORTHO05D007956 6.2e-09 63.9 63 47.6
CAN.G36.1 Capsicum annuum HOM05D005416 ORTHO05D007956 8.1e-09 63.5 75 49.3
ECA233G0392 Erigeron canadensis HOM05D005416 ORTHO05D007956 8.1e-09 63.5 61 54.1
Psat7g008160 Pisum sativum HOM05D005416 ORTHO05D007956 6.9e-08 60.5 76 44.7
unitig_62.g23745 Utricularia gibba HOM05D005416 ORTHO05D007956 1.2e-07 59.7 70 50.0
Ca_17262_v3 Cicer arietinum L. HOM05D005416 ORTHO05D007956 2.0e-07 58.9 68 48.5
Ca_17283_v3 Cicer arietinum L. HOM05D005416 ORTHO05D007956 2.0e-07 58.9 68 48.5
Zm00001eb190260 Zea mays HOM05D005416 ORTHO05D007956 2.0e-07 58.9 74 41.9
ATR0753G010 Amborella trichopoda HOM05D005416 ORTHO05D007956 3.8e-06 54.7 72 43.1
VMungo0540G2168 Vigna mungo HOM05D005416 ORTHO05D007956 6.4e-06 53.9 58 51.7


User provided reference genes

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