Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0286 Fragaria x ananassa HOM05D000007 ORTHO05D000017 9.2e-92 340.1 162 100.0
FAN17G2535 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.0e-63 245.0 156 81.4
FAN12G1497 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.3e-56 223.4 178 69.1
FvH4_4g30361 Fragaria vesca HOM05D000007 ORTHO05D000017 6.3e-56 221.1 178 68.0
Prupe.6G214700 Prunus persica HOM05D000007 ORTHO05D000017 2.3e-18 96.3 158 41.1
RcHm_v2.0_Chr2g0107851 Rosa chinensis HOM05D000007 ORTHO05D000017 1.3e-16 90.5 163 38.7
RcHm_v2.0_Chr2g0107811 Rosa chinensis HOM05D000007 ORTHO05D000017 1.7e-16 90.1 157 40.1
RcHm_v2.0_Chr2g0107801 Rosa chinensis HOM05D000007 ORTHO05D000017 2.2e-16 89.7 158 39.9
Prupe.6G214900 Prunus persica HOM05D000007 ORTHO05D000017 2.8e-16 89.4 161 41.0
RcHm_v2.0_Chr2g0107881 Rosa chinensis HOM05D000007 ORTHO05D000017 4.8e-16 88.6 158 41.1
RcHm_v2.0_Chr2g0107821 Rosa chinensis HOM05D000007 ORTHO05D000017 1.8e-15 86.7 158 39.2
Prupe.7G008100 Prunus persica HOM05D000007 ORTHO05D000017 2.4e-15 86.3 165 35.2
RcHm_v2.0_Chr3g0475411 Rosa chinensis HOM05D000007 ORTHO05D000017 2.4e-15 86.3 163 36.8
RcHm_v2.0_Chr2g0101031 Rosa chinensis HOM05D000007 ORTHO05D000017 3.1e-15 85.9 157 36.9
FAN26G1843 Fragaria x ananassa HOM05D000001 ORTHO05D009432 7.0e-15 84.7 158 38.6
RcHm_v2.0_Chr5g0059291 Rosa chinensis HOM05D000007 ORTHO05D000017 7.0e-15 84.7 161 37.3
FAN23G0184 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.6e-14 83.6 160 39.4
FvH4_3g32350 Fragaria vesca HOM05D000007 ORTHO05D000017 3.5e-14 82.4 163 36.2
RcHm_v2.0_Chr3g0468171 Rosa chinensis HOM05D000007 ORTHO05D000017 3.5e-14 82.4 157 41.4
FAN14G0917 Fragaria x ananassa HOM05D000001 ORTHO05D009574 4.5e-14 82.0 154 39.6
RcHm_v2.0_Chr5g0059551 Rosa chinensis HOM05D000007 ORTHO05D000017 4.5e-14 82.0 145 37.9
FAN11G0467 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.9e-14 81.6 197 34.5
FAN19G2319 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.9e-14 81.6 156 37.8
RcHm_v2.0_Chr2g0109761 Rosa chinensis HOM05D000007 ORTHO05D000017 7.7e-14 81.3 161 36.6
FvH4_1g17560 Fragaria vesca HOM05D000007 ORTHO05D000017 1.3e-13 80.5 156 37.2
RcHm_v2.0_Chr5g0059211 Rosa chinensis HOM05D000007 ORTHO05D000017 1.3e-13 80.5 165 37.6
FvH4_2g36701 Fragaria vesca HOM05D000007 ORTHO05D000017 2.2e-13 79.7 168 35.1
FvH4_3g14954 Fragaria vesca HOM05D000007 ORTHO05D000017 2.9e-13 79.3 197 34.0
FvH4_3g15782 Fragaria vesca HOM05D000007 ORTHO05D000017 2.9e-13 79.3 154 39.0
RcHm_v2.0_Chr2g0107891 Rosa chinensis HOM05D000007 ORTHO05D000017 6.5e-13 78.2 157 38.2
FvH4_6g14991 Fragaria vesca HOM05D000007 ORTHO05D000017 8.5e-13 77.8 160 37.5
FvH4_6g14993 Fragaria vesca HOM05D000007 ORTHO05D000017 8.5e-13 77.8 154 37.0
FvH4_1g17570 Fragaria vesca HOM05D000007 ORTHO05D000017 1.1e-12 77.4 156 37.8
FAN16G2932 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.1e-12 77.4 198 34.8
FvH4_1g18480 Fragaria vesca HOM05D000007 ORTHO05D000017 1.5e-12 77.0 158 36.1
FAN04G1848 Fragaria x ananassa HOM05D000007 ORTHO05D011902 1.5e-12 77.0 149 33.6
RcHm_v2.0_Chr2g0107781 Rosa chinensis HOM05D000007 ORTHO05D000017 1.9e-12 76.6 156 38.5
FvH4_6g14900 Fragaria vesca HOM05D000007 ORTHO05D000017 2.5e-12 76.3 154 37.0
FAN14G5209 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.5e-12 76.3 160 36.9
FAN06G0788 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.2e-12 75.5 162 37.7
FAN16G1371 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.2e-12 75.5 168 34.5
FAN20G2365 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.2e-12 75.5 155 34.2
RcHm_v2.0_Chr2g0107841 Rosa chinensis HOM05D000007 ORTHO05D000017 4.2e-12 75.5 171 35.1
FvH4_6g14981 Fragaria vesca HOM05D000007 ORTHO05D000017 5.5e-12 75.1 164 34.1
FAN10G2566 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.5e-12 75.1 126 41.3
FAN10G3975 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.5e-12 75.1 126 41.3
FAN14G2654 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.5e-12 75.1 164 34.1
FvH4_1g18430 Fragaria vesca HOM05D000007 ORTHO05D000017 9.5e-12 74.3 169 33.7
FAN11G3461 Fragaria x ananassa HOM05D001622 ORTHO05D002989 1.2e-11 73.9 156 36.5
FvH4_1g18470 Fragaria vesca HOM05D000007 ORTHO05D000017 1.6e-11 73.6 162 36.4
FvH4_6g14790 Fragaria vesca HOM05D000007 ORTHO05D000017 1.6e-11 73.6 158 36.7
FAN14G4843 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.6e-11 73.6 158 36.7
Prupe.2G278600 Prunus persica HOM05D000007 ORTHO05D000017 1.6e-11 73.6 156 32.7
FvH4_1g17581 Fragaria vesca HOM05D000007 ORTHO05D000017 2.1e-11 73.2 142 41.5
FvH4_1g18391 Fragaria vesca HOM05D000007 ORTHO05D000017 2.1e-11 73.2 170 34.1
FAN19G2602 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.1e-11 73.2 146 40.4
FAN23G2883 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.6e-11 72.4 170 37.6
FAN25G2493 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.7e-11 72.0 146 32.9
FAN06G0403 Fragaria x ananassa HOM05D000007 ORTHO05D000017 8.0e-11 71.2 80 50.0
FAN23G0995 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.8e-10 70.1 169 34.3
FvH4_6g14980 Fragaria vesca HOM05D000007 ORTHO05D000017 2.3e-10 69.7 152 35.5
FAN27G2044 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.3e-10 69.7 156 33.3
RcHm_v2.0_Chr3g0468191 Rosa chinensis HOM05D000007 ORTHO05D000017 2.3e-10 69.7 182 31.9
FAN09G3188 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.0e-10 69.3 164 32.3
FAN24G1725 Fragaria x ananassa HOM05D000007 ORTHO05D046568 3.0e-10 69.3 171 32.2
FvH4_3g15790 Fragaria vesca HOM05D001622 ORTHO05D000017 4.0e-10 68.9 78 47.4
FvH4_1g17550 Fragaria vesca HOM05D000007 ORTHO05D000017 6.8e-10 68.2 171 34.5
FvH4_2g33500 Fragaria vesca HOM05D000007 ORTHO05D000017 6.8e-10 68.2 176 31.8
FAN21G2880 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.8e-10 68.2 156 33.3
FAN26G2435 Fragaria x ananassa HOM05D000007 ORTHO05D046541 6.8e-10 68.2 169 33.7
FAN26G3331 Fragaria x ananassa HOM05D000007 ORTHO05D046541 6.8e-10 68.2 169 33.7
FvH4_6g14994 Fragaria vesca HOM05D000007 ORTHO05D000017 8.8e-10 67.8 125 37.6
FvH4_3g14950 Fragaria vesca HOM05D000007 ORTHO05D000017 1.2e-09 67.4 82 43.9
RcHm_v2.0_Chr1g0378141 Rosa chinensis HOM05D000007 ORTHO05D000017 1.2e-09 67.4 193 31.6
RcHm_v2.0_Chr5g0076151 Rosa chinensis HOM05D000007 ORTHO05D000017 1.2e-09 67.4 172 30.2
FvH4_2g36710 Fragaria vesca HOM05D000007 ORTHO05D000017 1.5e-09 67.0 152 33.6
RcHm_v2.0_Chr5g0059201 Rosa chinensis HOM05D000007 ORTHO05D000017 1.5e-09 67.0 159 32.7
FvH4_3g14941 Fragaria vesca HOM05D000007 ORTHO05D000017 2.0e-09 66.6 159 38.4
FAN21G1277 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.0e-09 66.6 196 29.1
FvH4_3g14940 Fragaria vesca HOM05D000007 ORTHO05D000017 2.6e-09 66.2 161 35.4
FvH4_6g19961 Fragaria vesca HOM05D000007 ORTHO05D000017 2.6e-09 66.2 159 29.6
FAN15G1356 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.6e-09 66.2 157 32.5
FvH4_3g32340 Fragaria vesca HOM05D000007 ORTHO05D000017 4.4e-09 65.5 74 41.9
FAN21G3529 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.4e-09 65.5 163 33.7
RcHm_v2.0_Chr2g0109731 Rosa chinensis HOM05D000007 ORTHO05D000017 4.4e-09 65.5 166 34.9
FvH4_3g41771 Fragaria vesca HOM05D000007 ORTHO05D000017 5.7e-09 65.1 135 37.0
FAN14G5164 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.7e-09 65.1 159 28.9
FvH4_3g45161 Fragaria vesca HOM05D000007 ORTHO05D000017 7.5e-09 64.7 71 45.1
RcHm_v2.0_Chr2g0086041 Rosa chinensis HOM05D000007 ORTHO05D013322 7.5e-09 64.7 171 30.4
RcHm_v2.0_Chr5g0059111 Rosa chinensis HOM05D000007 ORTHO05D000017 7.5e-09 64.7 159 32.1
FAN11G2942 Fragaria x ananassa HOM05D000007 ORTHO05D000017 9.8e-09 64.3 82 42.7
FvH4_3g42460 Fragaria vesca HOM05D000007 ORTHO05D000017 1.3e-08 63.9 156 31.4
COL.COLO4_11917 Corchorus olitorius HOM05D000007 ORTHO05D020500 1.7e-08 63.5 75 38.7
FvH4_1g19580 Fragaria vesca HOM05D000007 ORTHO05D000017 1.7e-08 63.5 161 32.9
FvH4_3g24880 Fragaria vesca HOM05D000007 ORTHO05D000017 1.7e-08 63.5 163 33.1
RcHm_v2.0_Chr5g0044501 Rosa chinensis HOM05D000007 ORTHO05D000017 1.7e-08 63.5 159 35.2
FAN11G0961 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.2e-08 63.2 163 33.1
FAN14G3180 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.2e-08 63.2 162 34.6
FvH4_3g42304 Fragaria vesca HOM05D000007 ORTHO05D000017 2.8e-08 62.8 171 34.5
FAN11G3870 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.8e-08 62.8 171 34.5
FAN28G0209 Fragaria x ananassa HOM05D000007 ORTHO05D000017 2.8e-08 62.8 171 34.5
FvH4_3g01100 Fragaria vesca HOM05D000007 ORTHO05D000017 3.7e-08 62.4 70 44.3
RcHm_v2.0_Chr2g0109771 Rosa chinensis HOM05D000007 ORTHO05D000017 3.7e-08 62.4 77 46.8
FAN03G1705 Fragaria x ananassa HOM05D000007 ORTHO05D000017 6.3e-08 61.6 73 49.3
FAN16G0625 Fragaria x ananassa HOM05D000007 ORTHO05D045626 6.3e-08 61.6 157 30.6
Prupe.2G278400 Prunus persica HOM05D000007 ORTHO05D000017 6.3e-08 61.6 157 31.8
RcHm_v2.0_Chr2g0086031 Rosa chinensis HOM05D000007 ORTHO05D013322 6.3e-08 61.6 150 34.7
FvH4_3g14952 Fragaria vesca HOM05D000007 ORTHO05D000017 1.1e-07 60.8 165 32.7
CiPaw.07G037600 Carya illinoinensis HOM05D000007 ORTHO05D000017 1.4e-07 60.5 83 38.6
Migut.G00653 Erythranthe guttata HOM05D000007 ORTHO05D000017 1.8e-07 60.1 108 36.1
MD09G1138900 Malus domestica HOM05D000007 ORTHO05D000017 2.4e-07 59.7 82 36.6
RcHm_v2.0_Chr6g0299781 Rosa chinensis HOM05D000007 ORTHO05D035269 2.4e-07 59.7 163 29.4
FvH4_1g13860 Fragaria vesca HOM05D000007 ORTHO05D000017 3.1e-07 59.3 72 41.7
FAN28G1569 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.1e-07 58.9 143 35.7
CiPaw.07G037900 Carya illinoinensis HOM05D000007 ORTHO05D000017 5.4e-07 58.5 156 33.3
FAN23G1980 Fragaria x ananassa HOM05D000007 ORTHO05D000017 5.4e-07 58.5 72 41.7
PGR083G2034 Punica granatum HOM05D000007 ORTHO05D000017 5.4e-07 58.5 76 43.4
RcHm_v2.0_Chr5g0076131 Rosa chinensis HOM05D000007 ORTHO05D000017 5.4e-07 58.5 97 35.1
RcHm_v2.0_Chr7g0211081 Rosa chinensis HOM05D000007 ORTHO05D000017 5.4e-07 58.5 78 44.9
RcHm_v2.0_Chr1g0321661 Rosa chinensis HOM05D000007 ORTHO05D000017 7.0e-07 58.2 85 41.2
RcHm_v2.0_Chr5g0076101 Rosa chinensis HOM05D000007 ORTHO05D000017 7.0e-07 58.2 93 35.5
Ah.02g123170 Amaranthus hybridus HOM05D022744 ORTHO05D018272 9.2e-07 57.8 98 35.7
RcHm_v2.0_Chr2g0109781 Rosa chinensis HOM05D000007 ORTHO05D000017 9.2e-07 57.8 152 34.2
RcHm_v2.0_Chr5g0076141 Rosa chinensis HOM05D000007 ORTHO05D000017 9.2e-07 57.8 90 37.8
TPR.G2751 Trifolium pratense HOM05D000007 ORTHO05D000017 9.2e-07 57.8 70 44.3
FAN25G0914 Fragaria x ananassa HOM05D000007 ORTHO05D000017 1.2e-06 57.4 145 33.1
Medtr3g103020 Medicago truncatula HOM05D000007 ORTHO05D000017 1.2e-06 57.4 96 36.5
Medtr5g070080 Medicago truncatula HOM05D000007 ORTHO05D000017 1.2e-06 57.4 97 36.1
RcHm_v2.0_Chr5g0076031 Rosa chinensis HOM05D000007 ORTHO05D000017 2.0e-06 56.6 175 30.3
vmacro04327 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 2.0e-06 56.6 70 47.1
CiPaw.07G038000 Carya illinoinensis HOM05D000007 ORTHO05D000017 2.7e-06 56.2 81 43.2
FvH4_1g13850 Fragaria vesca HOM05D000007 ORTHO05D000017 2.7e-06 56.2 84 41.7
FvH4_6g14972 Fragaria vesca HOM05D000007 ORTHO05D000017 2.7e-06 56.2 127 36.2
Medtr4g117720 Medicago truncatula HOM05D000007 ORTHO05D000017 2.7e-06 56.2 108 36.1
CiPaw.07G037500 Carya illinoinensis HOM05D000007 ORTHO05D000017 3.5e-06 55.8 154 35.7
PGR142G3580 Punica granatum HOM05D000007 ORTHO05D000017 3.5e-06 55.8 72 43.1
FAN16G0648 Fragaria x ananassa HOM05D000308 ORTHO05D000194 4.5e-06 55.5 203 26.6
Prupe.6G214600 Prunus persica HOM05D000007 ORTHO05D000017 4.5e-06 55.5 165 30.9
RcHm_v2.0_Chr5g0075691 Rosa chinensis HOM05D000007 ORTHO05D000017 4.5e-06 55.5 158 29.7
RcHm_v2.0_Chr1g0380601 Rosa chinensis HOM05D000007 ORTHO05D000017 7.7e-06 54.7 84 34.5
RcHm_v2.0_Chr5g0076061 Rosa chinensis HOM05D000007 ORTHO05D000017 7.7e-06 54.7 79 41.8
Thecc.04G270100 Theobroma cacao HOM05D000007 ORTHO05D000017 7.7e-06 54.7 86 36.0


User provided reference genes

Program Settings