Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0279 Fragaria x ananassa HOM05D006081 ORTHO05D007628 2.0e-52 208.8 103 100.0
FvH4_4g17860 Fragaria vesca HOM05D006081 ORTHO05D007628 1.4e-40 169.5 86 98.8
FAN12G2613 Fragaria x ananassa HOM05D006081 ORTHO05D007628 1.4e-40 169.5 86 98.8
FAN17G1774 Fragaria x ananassa HOM05D006081 ORTHO05D007628 5.2e-40 167.5 86 97.7
FAN07G2255 Fragaria x ananassa HOM05D006081 ORTHO05D007628 2.9e-38 161.8 86 95.3
RcHm_v2.0_Chr4g0421971 Rosa chinensis HOM05D006081 ORTHO05D007628 8.6e-27 123.6 99 72.7
MD16G1171400 Malus domestica HOM05D006081 ORTHO05D007628 1.5e-18 96.3 101 61.4
MD13G1169900 Malus domestica HOM05D006081 ORTHO05D007628 2.8e-17 92.0 98 62.2
Prupe.1G138200 Prunus persica HOM05D006081 ORTHO05D007628 1.2e-15 86.7 105 56.2
Phvul.009G246800 Phaseolus vulgaris HOM05D006081 ORTHO05D007628 1.3e-14 83.2 98 53.1
Actinidia01470 Actinidia chinensis HOM05D006081 ORTHO05D007628 2.9e-14 82.0 104 48.1
CSS0030149 Camellia sinensis var. sinensis HOM05D006081 ORTHO05D007628 3.8e-14 81.6 86 54.7
Cfa015373 Carpinus fangiana HOM05D006081 ORTHO05D007628 6.4e-14 80.9 95 54.7
Haze_01225 Corylus avellana HOM05D006081 ORTHO05D007628 6.4e-14 80.9 91 56.0
CiPaw.01G149700 Carya illinoinensis HOM05D006081 ORTHO05D007628 8.4e-14 80.5 98 51.0
CsaV3_6G017270 Cucumis sativus L. HOM05D006081 ORTHO05D007628 1.1e-13 80.1 91 51.6
VMungo1309G0529 Vigna mungo HOM05D006081 ORTHO05D007628 2.4e-13 79.0 98 51.0
CANSAT78G1428 Cannabis sativa HOM05D006081 ORTHO05D007628 3.2e-13 78.6 99 51.5
MELO3C021343.2 Cucumis melo HOM05D006081 ORTHO05D007628 3.2e-13 78.6 91 50.5
QL06p008580 Quercus lobata HOM05D006081 ORTHO05D007628 4.2e-13 78.2 94 50.0
vmacro08134 Vaccinium macrocarpon HOM05D006081 ORTHO05D007628 7.1e-13 77.4 93 51.6
Ca_01966_v3 Cicer arietinum L. HOM05D006081 ORTHO05D007628 2.1e-12 75.9 98 51.0
Psat1g153280 Pisum sativum HOM05D006081 ORTHO05D007628 3.5e-12 75.1 98 49.0
Atru.chr4.2827 Acer truncatum HOM05D006081 ORTHO05D007628 4.6e-12 74.7 98 50.0
Rhsim04G0220300 Rhododendron simsii HOM05D006081 ORTHO05D007628 4.6e-12 74.7 95 52.6
ClCG06G005230 Citrullus lanatus HOM05D006081 ORTHO05D007628 6.0e-12 74.3 91 48.4
Actinidia40266 Actinidia chinensis HOM05D006081 ORTHO05D007628 7.8e-12 73.9 92 50.0
Cpa.g.sc16.161 Carica papaya HOM05D006081 ORTHO05D007628 1.0e-11 73.6 97 47.4
Glyma.15G153100 Glycine max HOM05D006081 ORTHO05D007628 1.0e-11 73.6 98 48.0
Oeu023291.2 Olea europaea HOM05D006081 ORTHO05D007628 1.0e-11 73.6 91 51.6
Lj6g0000146 Lotus japonicus HOM05D006081 ORTHO05D007628 1.7e-11 72.8 98 50.0
Dinv29771 Davidia involucrata HOM05D006081 ORTHO05D007628 2.3e-11 72.4 91 48.4
Medtr2g436940 Medicago truncatula HOM05D006081 ORTHO05D007628 3.9e-11 71.6 103 48.5
Eucgr.H03897 Eucalyptus grandis HOM05D006081 ORTHO05D007628 5.1e-11 71.2 89 49.4
arahy.Tifrunner.gnm1.ann1.EZB5Q6 Arachis hypogaea HOM05D006081 ORTHO05D007628 1.1e-10 70.1 94 47.9
CiPaw.02G083900 Carya illinoinensis HOM05D006081 ORTHO05D007628 1.1e-10 70.1 98 46.9
Lalb_Chr18g0051761 Lupinus albus HOM05D006081 ORTHO05D007628 1.9e-10 69.3 102 46.1
Oeu027733.1 Olea europaea HOM05D006081 ORTHO05D007628 1.9e-10 69.3 90 48.9
Manes.15G013500 Manihot esculenta HOM05D006081 ORTHO05D007628 2.5e-10 68.9 100 46.0
MBI19_g30830_MAGBIO Magnolia biondii HOM05D006081 ORTHO05D007628 3.3e-10 68.6 97 43.3
Nn5g30060 Nelumbo nucifera HOM05D006081 ORTHO05D007628 5.6e-10 67.8 100 45.0
PGR031G1107 Punica granatum HOM05D006081 ORTHO05D007628 5.6e-10 67.8 91 48.4
TWI53G0242 Tripterygium wilfordii HOM05D006081 ORTHO05D007628 5.6e-10 67.8 99 47.5
Carub.0003s2143 Capsella rubella HOM05D006081 ORTHO05D007628 7.3e-10 67.4 97 44.3
Sed0014998 Sechium edule HOM05D006081 ORTHO05D007628 7.3e-10 67.4 86 46.5
Potri.008G210100 Populus trichocarpa HOM05D006081 ORTHO05D007628 9.6e-10 67.0 99 46.5
GSVIVG01017744001 Vitis vinifera HOM05D006081 ORTHO05D007628 9.6e-10 67.0 111 45.9
arahy.Tifrunner.gnm1.ann1.TA2ZSY Arachis hypogaea HOM05D006081 ORTHO05D007628 1.3e-09 66.6 94 46.8
BraA03t13376Z Brassica rapa HOM05D006081 ORTHO05D007628 1.6e-09 66.2 93 45.2
Peaxi162Scf00534g00212 Petunia axillaris HOM05D006081 ORTHO05D007628 1.6e-09 66.2 86 48.8
A03p42230 Brassica napus HOM05D006081 ORTHO05D007628 2.1e-09 65.9 93 45.2
Sc13g0003510 Simmondsia chinensis HOM05D006081 ORTHO05D007628 2.1e-09 65.9 93 43.0
Lalb_Chr20g0114491 Lupinus albus HOM05D006081 ORTHO05D007628 2.8e-09 65.5 98 48.0
C03p51690 Brassica napus HOM05D006081 ORTHO05D007628 3.6e-09 65.1 93 45.2
Cc00_g10580 Coffea canephora HOM05D006081 ORTHO05D007628 3.6e-09 65.1 97 47.4
Thhalv10021583m.g Eutrema salsugineum HOM05D006081 ORTHO05D007628 3.6e-09 65.1 93 46.2
BcaC01g03506 Brassica carinata HOM05D006081 ORTHO05D007628 4.8e-09 64.7 93 45.2
BolC3t17454H Brassica oleracea HOM05D006081 ORTHO05D007628 4.8e-09 64.7 93 45.2
TAR636G3617 Trochodendron aralioides HOM05D006081 ORTHO05D007628 6.2e-09 64.3 99 49.5
CARHR097370 Cardamine hirsuta HOM05D006081 ORTHO05D007628 1.1e-08 63.5 99 46.5
SGA_v2.0_scaffold55G19699 Striga asiatica HOM05D006081 ORTHO05D007628 1.1e-08 63.5 100 46.0
PGSC0003DMG400022662 Solanum tuberosum HOM05D006081 ORTHO05D007628 1.8e-08 62.8 89 46.1
Glyma.09G045900 Glycine max HOM05D006081 ORTHO05D007628 2.4e-08 62.4 93 45.2
ECA240G0281 Erigeron canadensis HOM05D006081 ORTHO05D007628 3.1e-08 62.0 98 46.9
Aa31LG8G8110 Aethionema arabicum HOM05D006081 ORTHO05D007628 4.0e-08 61.6 98 41.8
BcaB06g26235 Brassica carinata HOM05D006081 ORTHO05D007628 5.3e-08 61.2 91 46.2
DCAR_030534 Daucus carota HOM05D006081 ORTHO05D007628 6.9e-08 60.8 98 40.8
Nitab4.5_0003972g0010 Nicotiana tabacum HOM05D006081 ORTHO05D007628 6.9e-08 60.8 93 48.4
Sabra08G0154300 Salix brachista HOM05D006081 ORTHO05D007628 6.9e-08 60.8 98 42.9
CDE02G2676 Ceratophyllum demersum HOM05D006081 ORTHO05D000739 9.0e-08 60.5 94 47.9
Ciclev10005978m.g Citrus clementina HOM05D006081 ORTHO05D007628 9.0e-08 60.5 96 40.6
Lsat_1_v5_gn_5_49301 Lactuca sativa HOM05D006081 ORTHO05D007628 9.0e-08 60.5 95 42.1
Sp3g19430 Schrenkiella parvula HOM05D006081 ORTHO05D007628 1.2e-07 60.1 92 42.4
BcaB04g19166 Brassica carinata HOM05D006081 ORTHO05D007628 1.5e-07 59.7 91 45.1
Nitab4.5_0003749g0060 Nicotiana tabacum HOM05D006081 ORTHO05D007628 1.5e-07 59.7 92 46.7
AL3G35480 Arabidopsis lyrata HOM05D006081 ORTHO05D007628 2.0e-07 59.3 98 44.9
SEGI_25455 Sequoiadendron giganteum HOM05D006081 ORTHO05D007628 2.0e-07 59.3 96 45.8
TAR365G0221 Trochodendron aralioides HOM05D006081 ORTHO05D007628 2.0e-07 59.3 68 50.0
AT3G21400 Arabidopsis thaliana HOM05D006081 ORTHO05D007628 2.6e-07 58.9 92 44.6
CDE09G1305 Ceratophyllum demersum HOM05D006081 ORTHO05D007628 3.4e-07 58.5 99 45.5
Migut.N00097 Erythranthe guttata HOM05D006081 ORTHO05D007628 4.5e-07 58.2 111 43.2
THA.LOC104820251 Tarenaya hassleriana HOM05D006081 ORTHO05D007628 4.5e-07 58.2 96 43.8
A05p27230 Brassica napus HOM05D006081 ORTHO05D007628 5.8e-07 57.8 86 41.9
Solyc01g067080.3 Solanum lycopersicum HOM05D006081 ORTHO05D007628 5.8e-07 57.8 89 46.1
Manes.03G194000 Manihot esculenta HOM05D006081 ORTHO05D007628 7.6e-07 57.4 93 41.9
Thecc.04G283000 Theobroma cacao HOM05D006081 ORTHO05D007628 7.6e-07 57.4 96 42.7
BcaC05g28170 Brassica carinata HOM05D006081 ORTHO05D007628 1.3e-06 56.6 86 40.7
C05p42070 Brassica napus HOM05D006081 ORTHO05D007628 1.3e-06 56.6 86 40.7
BolC5t32937H Brassica oleracea HOM05D006081 ORTHO05D007628 1.3e-06 56.6 86 40.7
SalBow5G1281 Salvia bowleyana HOM05D006081 ORTHO05D007628 1.3e-06 56.6 93 40.9
Sopen01g028790 Solanum pennellii HOM05D006081 ORTHO05D007628 1.3e-06 56.6 89 46.1
Lj6A673G88 Lonicera japonica HOM05D006081 ORTHO05D007628 1.7e-06 56.2 32 75.0
PSO210G2816 Papaver somniferum HOM05D006081 ORTHO05D007628 1.7e-06 56.2 97 45.4
MSTRG.21799 Avicennia marina HOM05D006081 ORTHO05D007628 2.2e-06 55.8 96 43.8
PSO170G3586 Papaver somniferum HOM05D006081 ORTHO05D007628 2.2e-06 55.8 98 46.9
HanXRQChr03g0079991 Helianthus annuus HOM05D006081 ORTHO05D007628 2.9e-06 55.5 93 41.9
Gohir.A02G048800 Gossypium hirsutum HOM05D006081 ORTHO05D007628 4.9e-06 54.7 86 41.9
Gohir.D02G054100 Gossypium hirsutum HOM05D006081 ORTHO05D007628 6.4e-06 54.3 86 41.9
Gorai.005G059600 Gossypium raimondii HOM05D006081 ORTHO05D007628 6.4e-06 54.3 86 41.9
TPR.G26808 Trifolium pratense HOM05D006081 ORTHO05D007628 6.4e-06 54.3 31 77.4
EL10Ac3g06586 Beta vulgaris HOM05D006081 ORTHO05D007628 8.4e-06 53.9 91 40.7


User provided reference genes

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