Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0275 Fragaria x ananassa HOM05D004181 ORTHO05D005610 1.1e-207 726.5 374 100.0
FAN07G0512 Fragaria x ananassa HOM05D004181 ORTHO05D005610 2.7e-203 711.8 373 98.4
FAN12G4244 Fragaria x ananassa HOM05D004181 ORTHO05D005610 3.5e-203 711.4 373 98.1
FvH4_4g17050 Fragaria vesca HOM05D004181 ORTHO05D005610 6.0e-203 710.7 373 97.9
FAN17G2769 Fragaria x ananassa HOM05D004181 ORTHO05D005610 3.0e-202 708.4 373 97.9
FAN12G1830 Fragaria x ananassa HOM05D004181 ORTHO05D005610 1.9e-201 705.7 373 97.6
RcHm_v2.0_Chr4g0420851 Rosa chinensis HOM05D004181 ORTHO05D005610 4.6e-195 684.5 373 94.6
Prupe.1G143100 Prunus persica HOM05D004181 ORTHO05D005610 9.0e-183 643.7 371 88.7
MD16G1176300 Malus domestica HOM05D004181 ORTHO05D005610 5.8e-182 641.0 374 88.5
QL06p007241 Quercus lobata HOM05D004181 ORTHO05D005610 2.7e-163 578.9 374 80.2
Dinv44435 Davidia involucrata HOM05D004181 ORTHO05D005610 9.7e-161 570.5 375 77.3
MD13G1174600 Malus domestica HOM05D004181 ORTHO05D005610 2.6e-158 562.4 372 80.1
Haze_01049 Corylus avellana HOM05D004181 ORTHO05D005610 2.5e-156 555.8 372 76.6
QL12p038326 Quercus lobata HOM05D004181 ORTHO05D005610 5.5e-156 554.7 374 77.5
CSS0009092 Camellia sinensis var. sinensis HOM05D004181 ORTHO05D005610 2.1e-155 552.7 375 74.1
Ciclev10004155m.g Citrus clementina HOM05D004181 ORTHO05D005610 4.7e-155 551.6 373 76.7
Thecc.04G276100 Theobroma cacao HOM05D004181 ORTHO05D005610 1.0e-154 550.4 375 74.9
Cfa015503 Carpinus fangiana HOM05D004181 ORTHO05D005610 1.4e-154 550.1 370 76.5
Duzib151G0672 Durio zibethinus HOM05D004181 ORTHO05D005610 1.8e-154 549.7 375 74.4
CiPaw.01G154000 Carya illinoinensis HOM05D004181 ORTHO05D005610 2.3e-154 549.3 376 75.5
COL.COLO4_13939 Corchorus olitorius HOM05D004181 ORTHO05D005610 3.0e-154 548.9 375 74.7
LjContig00389g0007799 Lotus japonicus HOM05D004181 ORTHO05D005610 3.9e-154 548.5 375 75.2
CSS0036329 Camellia sinensis var. sinensis HOM05D004181 ORTHO05D005610 8.8e-154 547.4 376 73.4
TAR633G0339 Trochodendron aralioides HOM05D004181 ORTHO05D005610 8.8e-154 547.4 375 73.9
Manes.15G017750 Manihot esculenta HOM05D004181 ORTHO05D005610 5.7e-153 544.7 375 74.1
Medtr2g020380 Medicago truncatula HOM05D004181 ORTHO05D005610 7.0e-151 537.7 375 74.1
Glyma.13G214400 Glycine max HOM05D004181 ORTHO05D005610 5.9e-150 534.6 374 74.1
Glyma.15G098800 Glycine max HOM05D004181 ORTHO05D005610 1.7e-149 533.1 376 73.7
Manes.03G190400 Manihot esculenta HOM05D004181 ORTHO05D005610 2.2e-149 532.7 375 73.6
CANSAT78G2156 Cannabis sativa HOM05D004181 ORTHO05D005610 3.8e-149 531.9 377 73.7
TPR.G1487 Trifolium pratense HOM05D004181 ORTHO05D005610 3.8e-149 531.9 375 74.4
Lalb_Chr18g0055771 Lupinus albus HOM05D004181 ORTHO05D005610 5.0e-149 531.6 375 72.5
Potri.008G195800 Populus trichocarpa HOM05D004181 ORTHO05D005610 8.5e-149 530.8 375 74.7
Cpa.g.sc16.105 Carica papaya HOM05D004181 ORTHO05D005610 1.5e-148 530.0 375 71.7
TWI09G1497 Tripterygium wilfordii HOM05D004181 ORTHO05D005610 1.5e-148 530.0 375 74.7
Potri.010G031800 Populus trichocarpa HOM05D004181 ORTHO05D005610 4.2e-148 528.5 374 73.8
Ca_00581_v3 Cicer arietinum L. HOM05D004181 ORTHO05D005610 1.8e-146 523.1 372 72.6
Psat1g186920 Pisum sativum HOM05D004181 ORTHO05D005610 2.3e-146 522.7 375 72.5
Phvul.006G160500 Phaseolus vulgaris HOM05D004181 ORTHO05D005610 3.0e-146 522.3 376 71.8
Rhsim04G0215600 Rhododendron simsii HOM05D004181 ORTHO05D005610 3.0e-146 522.3 376 70.7
Gohir.A10G101825 Gossypium hirsutum HOM05D004181 ORTHO05D005610 4.0e-146 521.9 375 71.5
Gorai.011G185300 Gossypium raimondii HOM05D004181 ORTHO05D005610 4.0e-146 521.9 375 71.5
TWI73G0666 Tripterygium wilfordii HOM05D004181 ORTHO05D005610 8.8e-146 520.8 373 74.0
Sabra08G0148900 Salix brachista HOM05D004181 ORTHO05D005610 2.0e-145 519.6 375 73.9
ClCG05G005760 Citrullus lanatus HOM05D004181 ORTHO05D005610 1.7e-144 516.5 375 70.7
AUR62040726 Chenopodium quinoa HOM05D004181 ORTHO05D005610 2.2e-144 516.2 373 70.5
VMungo0540G0214 Vigna mungo HOM05D004181 ORTHO05D005610 2.8e-144 515.8 375 71.2
CsaV3_3G014080 Cucumis sativus L. HOM05D004181 ORTHO05D005610 4.8e-144 515.0 375 70.9
Sed0020769 Sechium edule HOM05D004181 ORTHO05D005610 4.8e-144 515.0 375 70.9
MELO3C006602.2 Cucumis melo HOM05D004181 ORTHO05D005610 1.8e-143 513.1 375 70.7
Gohir.D02G051700 Gossypium hirsutum HOM05D004181 ORTHO05D005610 2.4e-143 512.7 373 73.2
Peaxi162Scf00058g01114 Petunia axillaris HOM05D004181 ORTHO05D005610 3.1e-143 512.3 369 69.9
Sed0026329 Sechium edule HOM05D004181 ORTHO05D005610 7.0e-143 511.1 375 70.1
Gorai.005G057000 Gossypium raimondii HOM05D004181 ORTHO05D005610 1.6e-142 510.0 373 72.9
Cc03_g12380 Coffea canephora HOM05D004181 ORTHO05D005610 2.0e-142 509.6 372 68.8
AUR62040385 Chenopodium quinoa HOM05D004181 ORTHO05D005610 3.5e-142 508.8 373 70.0
Solyc08g013940.3 Solanum lycopersicum HOM05D004181 ORTHO05D005610 1.0e-141 507.3 375 68.8
Lalb_Chr15g0087081 Lupinus albus HOM05D004181 ORTHO05D005610 1.7e-141 506.5 377 71.6
vmacro08213 Vaccinium macrocarpon HOM05D004181 ORTHO05D005610 3.8e-141 505.4 376 69.4
Nitab4.5_0003641g0020 Nicotiana tabacum HOM05D004181 ORTHO05D005610 6.5e-141 504.6 372 68.3
Nitab4.5_0000242g0080 Nicotiana tabacum HOM05D004181 ORTHO05D005610 1.5e-140 503.4 372 69.1
Sopen08g004800 Solanum pennellii HOM05D004181 ORTHO05D005610 1.9e-140 503.1 375 68.5
CAN.G2005.1 Capsicum annuum HOM05D004181 ORTHO05D005610 9.4e-140 500.7 375 68.0
Nn3g21283 Nelumbo nucifera HOM05D004181 ORTHO05D005610 1.2e-139 500.4 376 68.6
PSO170G6249 Papaver somniferum HOM05D004181 ORTHO05D005610 1.6e-139 500.0 372 68.8
Peaxi162Scf00075g01553 Petunia axillaris HOM05D004181 ORTHO05D005610 2.1e-139 499.6 371 69.3
Gohir.D10G165800 Gossypium hirsutum HOM05D004181 ORTHO05D005610 2.3e-138 496.1 360 71.4
Aqoxy5G00623 Aquilegia oxysepala HOM05D004181 ORTHO05D005610 2.6e-137 492.7 372 70.4
EL10Ac3g06539 Beta vulgaris HOM05D004181 ORTHO05D005610 1.3e-136 490.3 375 68.0
MSTRG.21818 Avicennia marina HOM05D004181 ORTHO05D005610 2.2e-136 489.6 371 67.9
Eucgr.H03714 Eucalyptus grandis HOM05D004181 ORTHO05D005610 1.0e-133 480.7 371 66.8
SalBow5G0241 Salvia bowleyana HOM05D004181 ORTHO05D005610 1.0e-133 480.7 370 66.8
SalBow5G5345 Salvia bowleyana HOM05D004181 ORTHO05D005610 2.3e-133 479.6 370 66.5
GSVIVG01017819001 Vitis vinifera HOM05D004181 ORTHO05D005610 3.3e-132 475.7 373 69.2
SGA_v2.0_scaffold89G27558 Striga asiatica HOM05D004181 ORTHO05D005610 1.7e-128 463.4 370 63.2
Migut.N00126 Erythranthe guttata HOM05D004181 ORTHO05D005610 2.2e-128 463.0 338 68.9
BraA10t44151Z Brassica rapa HOM05D004181 ORTHO05D005610 4.9e-128 461.8 376 64.1
Sp6g25640 Schrenkiella parvula HOM05D004181 ORTHO05D005610 1.4e-127 460.3 377 64.2
BolC3t13535H Brassica oleracea HOM05D004181 ORTHO05D005610 1.8e-127 459.9 377 64.2
A10p20860 Brassica napus HOM05D004181 ORTHO05D005610 2.4e-127 459.5 376 63.8
C09p57750 Brassica napus HOM05D004181 ORTHO05D005610 4.1e-127 458.8 376 63.6
BcaC04g18651 Brassica carinata HOM05D004181 ORTHO05D005610 7.0e-127 458.0 376 63.3
BolC9t58645H Brassica oleracea HOM05D004181 ORTHO05D005610 9.2e-127 457.6 376 63.3
AL6G29980 Arabidopsis lyrata HOM05D004181 ORTHO05D005610 1.6e-126 456.8 378 64.6
Carub.0006s1700 Capsella rubella HOM05D004181 ORTHO05D005610 5.9e-126 454.9 378 63.2
Thhalv10012450m.g Eutrema salsugineum HOM05D004181 ORTHO05D005610 5.9e-126 454.9 377 63.7
Aa31LG11G10920 Aethionema arabicum HOM05D004181 ORTHO05D005610 2.9e-125 452.6 379 62.0
CARHR194300 Cardamine hirsuta HOM05D004181 ORTHO05D005610 1.5e-124 450.3 378 63.8
AT5G18700 Arabidopsis thaliana HOM05D004181 ORTHO05D005610 3.3e-124 449.1 378 63.8
A03p09050 Brassica napus HOM05D004181 ORTHO05D005610 7.3e-124 448.0 377 62.9
BraA03t10229Z Brassica rapa HOM05D004181 ORTHO05D005610 2.8e-123 446.0 377 62.9
C03p10540 Brassica napus HOM05D004181 ORTHO05D005610 4.0e-122 442.2 377 62.3
CDE12G0304 Ceratophyllum demersum HOM05D004181 ORTHO05D005610 4.1e-119 432.2 375 60.8
HPP92_025279 Vanilla planifolia HOM05D004181 ORTHO05D005610 9.5e-116 421.0 378 58.5
CiPaw.02G087200 Carya illinoinensis HOM05D004181 ORTHO05D005610 2.8e-115 419.5 360 64.7
Os01g0259400 Oryza sativa ssp. japonica HOM05D004181 ORTHO05D005610 4.7e-115 418.7 375 58.1
Gohir.A02G045701 Gossypium hirsutum HOM05D004181 ORTHO05D005610 2.3e-114 416.4 313 72.2
Zm00001eb333450 Zea mays HOM05D004181 ORTHO05D005610 2.3e-114 416.4 375 57.6
SHI00295 Sapria himalayana HOM05D004181 ORTHO05D005610 6.8e-114 414.8 371 57.4
Zm00001eb127880 Zea mays HOM05D004181 ORTHO05D005610 1.1e-111 407.5 376 57.7
Hund20614 Selenicereus undatus HOM05D004181 ORTHO05D005610 3.2e-111 406.0 296 69.9
ATR0706G144 Amborella trichopoda HOM05D004181 ORTHO05D005610 6.6e-109 398.3 376 55.6
BcaB08g36651 Brassica carinata HOM05D004181 ORTHO05D005610 3.6e-107 392.5 376 58.5
Sc13g0003660 Simmondsia chinensis HOM05D004181 ORTHO05D005610 3.1e-98 362.8 275 70.5
SEGI_19119 Sequoiadendron giganteum HOM05D004181 ORTHO05D005610 7.1e-87 325.1 378 48.7
arahy.Tifrunner.gnm1.ann1.6ZP27B Arachis hypogaea HOM05D004181 ORTHO05D005610 1.9e-84 317.0 212 74.1
Mapoly0072s0051 Marchantia polymorpha HOM05D004181 ORTHO05D005610 9.9e-73 278.1 389 42.9
Pp3c14_3850 Physcomitrium patens HOM05D004181 ORTHO05D005610 9.9e-73 278.1 391 41.4
AagrBONN_evm.TU.Sc2ySwM_117.2942 Anthoceros agrestis HOM05D004181 ORTHO05D005610 3.8e-72 276.2 390 41.5
Pp3c2_16690 Physcomitrium patens HOM05D004181 ORTHO05D005610 2.5e-68 263.5 393 40.7
RcHm_v2.0_Chr4g0420821 Rosa chinensis HOM05D004181 ORTHO05D005610 2.6e-57 226.9 134 86.6
AT1G33940 Arabidopsis thaliana HOM05D004181 ORTHO05D005610 5.9e-57 225.7 257 54.5
CBR_g38144 Chara braunii HOM05D004181 ORTHO05D005610 8.8e-53 211.8 412 32.5
A06p07140 Brassica napus HOM05D004181 ORTHO05D021060 3.8e-48 196.4 373 38.3
Atru.chr4.2742 Acer truncatum HOM05D004181 ORTHO05D005610 6.3e-43 179.1 107 81.3
Lj6C668T4 Lonicera japonica HOM05D004181 ORTHO05D005610 1.8e-42 177.6 115 74.8
A06p07240 Brassica napus HOM05D004181 ORTHO05D021060 2.2e-40 170.6 371 35.6
ECA233G4950 Erigeron canadensis HOM05D004181 ORTHO05D005610 2.9e-32 143.7 122 58.2
A06p07190 Brassica napus HOM05D004181 ORTHO05D021060 3.2e-31 140.2 155 51.6
DCAR_024617 Daucus carota HOM05D004181 ORTHO05D005610 3.2e-31 140.2 118 56.8
Lsat_1_v5_gn_6_15980 Lactuca sativa HOM05D004181 ORTHO05D005610 3.6e-30 136.7 124 54.8
HanXRQChr13g0414551 Helianthus annuus HOM05D004181 ORTHO05D005610 1.4e-29 134.8 121 54.5
SGA_v2.0_scaffold299G47726 Striga asiatica HOM05D004181 ORTHO05D005610 5.2e-29 132.9 117 58.1
Sabra10G0031300 Salix brachista HOM05D007701 ORTHO05D006440 9.7e-28 128.6 266 36.5
Eucgr.H03477 Eucalyptus grandis HOM05D004181 ORTHO05D005610 1.7e-24 117.9 103 63.1
Eucgr.H03703 Eucalyptus grandis HOM05D004181 ORTHO05D005610 2.2e-24 117.5 102 61.8
Eucgr.H03732 Eucalyptus grandis HOM05D004181 ORTHO05D005610 1.9e-23 114.4 102 62.7
Rhsim13G0005700 Rhododendron simsii HOM05D004181 ORTHO05D005610 7.2e-23 112.5 253 36.4
Eucgr.H03684 Eucalyptus grandis HOM05D004181 ORTHO05D005610 3.6e-22 110.2 102 59.8
Cre14.g612000 Chlamydomonas reinhardtii HOM05D004181 ORTHO05D005610 1.5e-20 104.8 217 31.3
MCO07G673 Micromonas commoda HOM05D004181 ORTHO05D005610 8.3e-19 99.0 324 27.5
Atru.chr4.2743 Acer truncatum HOM05D004181 ORTHO05D021060 1.1e-15 88.6 68 63.2
BraA06t23930Z Brassica rapa HOM05D004181 ORTHO05D021060 6.3e-11 72.8 83 53.0
PRCOL_00001584 Prasinoderma coloniale HOM05D004181 ORTHO05D005610 1.6e-09 68.2 203 25.6
Lalb_Chr20g0118201 Lupinus albus HOM05D004181 ORTHO05D005610 6.6e-08 62.8 43 72.1


User provided reference genes

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