Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0219 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.2e-249 865.1 441 100.0
FvH4_4g33140 Fragaria vesca HOM05D001920 ORTHO05D005408 9.5e-240 833.2 490 89.2
FAN12G3829 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.6e-234 815.8 490 87.1
FAN07G1923 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.0e-226 788.9 491 83.5
RcHm_v2.0_Chr4g0442191 Rosa chinensis HOM05D001920 ORTHO05D005408 2.0e-205 719.2 490 78.4
FAN17G1736 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.5e-179 631.3 418 83.0
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 2.6e-136 489.6 502 54.6
Medtr8g074590 Medicago truncatula HOM05D001920 ORTHO05D005408 3.4e-136 489.2 500 53.6
PGR044G1731 Punica granatum HOM05D001920 ORTHO05D005408 3.4e-136 489.2 493 53.8
MD15G1055600 Malus domestica HOM05D001920 ORTHO05D005408 4.4e-136 488.8 494 54.3
Psat4g103240 Pisum sativum HOM05D001920 ORTHO05D005408 7.5e-136 488.0 508 53.0
Ciclev10007867m.g Citrus clementina HOM05D001920 ORTHO05D005408 2.2e-135 486.5 502 54.4
Prupe.1G408800 Prunus persica HOM05D001920 ORTHO05D005408 2.8e-135 486.1 502 54.6
Ca_03647_v3 Cicer arietinum L. HOM05D001920 ORTHO05D005408 4.8e-135 485.3 497 52.9
Glyma.02G043400 Glycine max HOM05D001920 ORTHO05D005408 1.1e-134 484.2 497 53.5
Glyma.16G120600 Glycine max HOM05D001920 ORTHO05D005408 1.1e-134 484.2 497 53.5
Phvul.003G267800 Phaseolus vulgaris HOM05D001920 ORTHO05D005408 1.1e-134 484.2 508 52.6
Gohir.D08G268800 Gossypium hirsutum HOM05D001920 ORTHO05D005408 2.4e-134 483.0 497 53.7
Sabra06G0174400 Salix brachista HOM05D001920 ORTHO05D005408 2.4e-134 483.0 501 54.3
Gorai.004G286500 Gossypium raimondii HOM05D001920 ORTHO05D005408 4.1e-134 482.3 497 53.5
Potri.006G225500 Populus trichocarpa HOM05D001920 ORTHO05D005408 4.1e-134 482.3 501 53.9
VMungo0251G2102 Vigna mungo HOM05D001920 ORTHO05D005408 5.3e-134 481.9 497 52.9
COL.COLO4_21094 Corchorus olitorius HOM05D001920 ORTHO05D005408 7.0e-134 481.5 497 53.5
CiPaw.15G036600 Carya illinoinensis HOM05D001920 ORTHO05D005408 1.6e-133 480.3 493 53.8
Lalb_Chr22g0356171 Lupinus albus HOM05D001920 ORTHO05D005408 1.6e-133 480.3 501 52.7
MD08G1065800 Malus domestica HOM05D001920 ORTHO05D005408 1.6e-133 480.3 494 53.8
SalBow4G2367 Salvia bowleyana HOM05D001920 ORTHO05D005408 1.6e-133 480.3 490 54.1
arahy.Tifrunner.gnm1.ann1.9L6JUF Arachis hypogaea HOM05D001920 ORTHO05D005408 2.0e-133 479.9 493 52.9
Duzib187G1306 Durio zibethinus HOM05D001920 ORTHO05D005408 2.7e-133 479.6 497 53.1
Manes.16G082600 Manihot esculenta HOM05D001920 ORTHO05D005408 3.5e-133 479.2 501 53.3
Sp6g31610 Schrenkiella parvula HOM05D001920 ORTHO05D005408 3.5e-133 479.2 492 52.8
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.9e-133 478.4 491 55.0
BcaC03g13404 Brassica carinata HOM05D001920 ORTHO05D005408 7.7e-133 478.0 492 52.6
C02p05530 Brassica napus HOM05D001920 ORTHO05D005408 7.7e-133 478.0 492 52.6
BolC2t06498H Brassica oleracea HOM05D001920 ORTHO05D005408 7.7e-133 478.0 492 52.6
A02p01310 Brassica napus HOM05D001920 ORTHO05D005408 1.0e-132 477.6 492 52.6
BraA02t05109Z Brassica rapa HOM05D001920 ORTHO05D005408 1.0e-132 477.6 492 52.6
CSS0047067 Camellia sinensis var. sinensis HOM05D001920 ORTHO05D005408 1.0e-132 477.6 502 53.4
Haze_18151 Corylus avellana HOM05D001920 ORTHO05D005408 1.0e-132 477.6 513 52.6
Dinv12437 Davidia involucrata HOM05D001920 ORTHO05D005408 1.0e-132 477.6 496 54.4
Atru.chr7.1932 Acer truncatum HOM05D001920 ORTHO05D005408 1.3e-132 477.2 500 54.2
CARHR201150 Cardamine hirsuta HOM05D001920 ORTHO05D005408 1.3e-132 477.2 492 52.6
THA.LOC104799157 Tarenaya hassleriana HOM05D001920 ORTHO05D005408 1.7e-132 476.9 497 52.5
AL6G22770 Arabidopsis lyrata HOM05D001920 ORTHO05D005408 2.2e-132 476.5 492 52.6
Carub.0006s1052 Capsella rubella HOM05D001920 ORTHO05D005408 2.2e-132 476.5 492 52.4
RcHm_v2.0_Chr6g0311281 Rosa chinensis HOM05D001920 ORTHO05D005408 2.2e-132 476.5 495 55.4
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.9e-132 476.1 491 54.8
HanXRQChr10g0309741 Helianthus annuus HOM05D001920 ORTHO05D005408 2.9e-132 476.1 501 52.3
Lj4g0027878 Lotus japonicus HOM05D001920 ORTHO05D005408 2.9e-132 476.1 492 52.8
Gohir.A08G247700 Gossypium hirsutum HOM05D001920 ORTHO05D005408 3.8e-132 475.7 497 53.3
FvH4_2g31510 Fragaria vesca HOM05D001920 ORTHO05D005408 5.0e-132 475.3 488 54.7
Hund19436 Selenicereus undatus HOM05D001920 ORTHO05D005408 5.0e-132 475.3 501 51.9
GSVIVG01035413001 Vitis vinifera HOM05D001920 ORTHO05D005408 8.5e-132 474.6 497 52.7
Thhalv10013117m.g Eutrema salsugineum HOM05D001920 ORTHO05D005408 1.5e-131 473.8 492 52.2
TAR626G1364 Trochodendron aralioides HOM05D001920 ORTHO05D005408 1.9e-131 473.4 497 52.5
HanXRQChr12g0359101 Helianthus annuus HOM05D001920 ORTHO05D005408 2.5e-131 473.0 501 51.3
vmacro07770 Vaccinium macrocarpon HOM05D001920 ORTHO05D005408 2.5e-131 473.0 501 53.1
BolC3t13123H Brassica oleracea HOM05D001920 ORTHO05D005408 3.2e-131 472.6 492 52.4
CANSAT11G1997 Cannabis sativa HOM05D001920 ORTHO05D005408 3.2e-131 472.6 492 53.7
C03p06150 Brassica napus HOM05D001920 ORTHO05D005408 4.2e-131 472.2 492 52.2
Lsat_1_v5_gn_4_73880 Lactuca sativa HOM05D001920 ORTHO05D005408 9.4e-131 471.1 501 52.3
Lj7A258G43 Lonicera japonica HOM05D001920 ORTHO05D005408 1.6e-130 470.3 500 53.4
A03p05350 Brassica napus HOM05D001920 ORTHO05D005408 2.1e-130 469.9 492 52.0
Thecc.09G057700 Theobroma cacao HOM05D001920 ORTHO05D005408 2.7e-130 469.5 497 52.3
Peaxi162Scf00694g00218 Petunia axillaris HOM05D001920 ORTHO05D005408 4.7e-130 468.8 493 52.5
PGSC0003DMG400006851 Solanum tuberosum HOM05D001920 ORTHO05D005408 4.7e-130 468.8 492 52.6
CAN.G219.68 Capsicum annuum HOM05D001920 ORTHO05D005408 6.1e-130 468.4 492 52.4
TWI34G1596 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 6.1e-130 468.4 497 53.1
Migut.D00410 Erythranthe guttata HOM05D001920 ORTHO05D005408 8.0e-130 468.0 493 52.5
CsaV3_4G035800 Cucumis sativus L. HOM05D001920 ORTHO05D005408 1.0e-129 467.6 493 53.3
Cc08_g10930 Coffea canephora HOM05D001920 ORTHO05D005408 1.4e-129 467.2 489 53.0
Aa31LG3G15240 Aethionema arabicum HOM05D001920 ORTHO05D005408 4.0e-129 465.7 526 49.6
arahy.Tifrunner.gnm1.ann1.UJN8CA Arachis hypogaea HOM05D001920 ORTHO05D005408 5.2e-129 465.3 512 50.8
FAN24G1332 Fragaria x ananassa HOM05D001920 ORTHO05D005408 6.8e-129 464.9 498 53.6
EL10Ac8g19267 Beta vulgaris HOM05D001920 ORTHO05D005408 8.8e-129 464.5 501 50.3
Sc23g0005750 Simmondsia chinensis HOM05D001920 ORTHO05D005408 8.8e-129 464.5 495 51.3
TWI63G1659 Tripterygium wilfordii HOM05D001920 ORTHO05D005408 8.8e-129 464.5 497 52.5
arahy.Tifrunner.gnm1.ann1.14SSX1 Arachis hypogaea HOM05D001920 ORTHO05D005408 1.5e-128 463.8 492 51.4
arahy.Tifrunner.gnm1.ann1.RZJX0Q Arachis hypogaea HOM05D001920 ORTHO05D005408 2.0e-128 463.4 492 51.6
unitig_8.g5056 Utricularia gibba HOM05D001920 ORTHO05D005408 5.7e-128 461.8 493 51.7
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 7.5e-128 461.5 501 53.3
Solyc01g087650.4 Solanum lycopersicum HOM05D001920 ORTHO05D005408 1.3e-127 460.7 492 51.8
MSTRG.14078 Avicennia marina HOM05D001920 ORTHO05D005408 1.7e-127 460.3 491 52.7
AUR62027456 Chenopodium quinoa HOM05D001920 ORTHO05D005408 1.7e-127 460.3 486 51.6
Migut.E01586 Erythranthe guttata HOM05D001920 ORTHO05D005408 1.7e-127 460.3 494 52.4
Nitab4.5_0004053g0020 Nicotiana tabacum HOM05D001920 ORTHO05D005408 1.7e-127 460.3 498 52.0
RhsimUnG0209800 Rhododendron simsii HOM05D001920 ORTHO05D005408 2.2e-127 459.9 500 51.8
Ah.09g228460 Amaranthus hybridus HOM05D001920 ORTHO05D005408 2.8e-127 459.5 501 49.9
AUR62031243 Chenopodium quinoa HOM05D001920 ORTHO05D005408 2.8e-127 459.5 495 50.7
QL02p000680 Quercus lobata HOM05D001920 ORTHO05D005408 2.8e-127 459.5 493 51.9
Actinidia29326 Actinidia chinensis HOM05D001920 ORTHO05D005408 6.3e-127 458.4 511 51.5
BcaNung02634 Brassica carinata HOM05D001920 ORTHO05D005408 8.3e-127 458.0 489 51.9
ClCG05G018020 Citrullus lanatus HOM05D001920 ORTHO05D005408 8.3e-127 458.0 493 52.9
PSO210G2773 Papaver somniferum HOM05D001920 ORTHO05D005408 1.4e-126 457.2 502 50.2
BraA03t09873Z Brassica rapa HOM05D001920 ORTHO05D005408 1.8e-126 456.8 521 49.1
Aqoxy6G00323 Aquilegia oxysepala HOM05D001920 ORTHO05D005408 2.4e-126 456.4 505 50.3
CDE05G1481 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 2.4e-126 456.4 492 50.4
Sopen01g034610 Solanum pennellii HOM05D001920 ORTHO05D005408 3.1e-126 456.1 492 51.4
PSO210G7360 Papaver somniferum HOM05D001920 ORTHO05D005408 1.0e-124 451.1 497 50.1
BcaB01g05437 Brassica carinata HOM05D001920 ORTHO05D005408 6.6e-124 448.4 473 51.0
ATR0686G037 Amborella trichopoda HOM05D001920 ORTHO05D005408 4.2e-123 445.7 488 50.6
DCAR_003139 Daucus carota HOM05D001920 ORTHO05D005408 3.6e-122 442.6 473 51.0
Cpa.g.sc222.19 Carica papaya HOM05D001920 ORTHO05D005408 6.1e-122 441.8 451 54.8
RhsimUnG0018300 Rhododendron simsii HOM05D001920 ORTHO05D005408 2.3e-121 439.9 504 50.2
FAN12G2252 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.6e-120 436.4 315 77.5
HPP92_005529 Vanilla planifolia HOM05D001920 ORTHO05D005408 2.8e-119 433.0 511 47.9
ECA234G0290 Erigeron canadensis HOM05D001920 ORTHO05D005408 1.4e-118 430.6 492 49.4
MELO3C016885.2 Cucumis melo HOM05D001920 ORTHO05D005408 3.2e-118 429.5 467 52.7
Os12g0538300 Oryza sativa ssp. japonica HOM05D001920 ORTHO05D005408 1.6e-117 427.2 491 47.3
AT5G11980 Arabidopsis thaliana HOM05D001920 ORTHO05D005408 4.5e-117 425.6 456 51.5
Zm00001eb401360 Zea mays HOM05D001920 ORTHO05D005408 5.9e-117 425.2 491 46.8
Zm00001eb006920 Zea mays HOM05D001920 ORTHO05D005408 7.8e-117 424.9 491 47.7
Nn8g38775 Nelumbo nucifera HOM05D001920 ORTHO05D005408 3.9e-116 422.5 454 52.0
Eucgr.C03063 Eucalyptus grandis HOM05D001920 ORTHO05D005408 8.6e-116 421.4 479 50.1
Actinidia03557 Actinidia chinensis HOM05D001920 ORTHO05D005408 1.2e-112 411.0 444 52.3
Mapoly0087s0038 Marchantia polymorpha HOM05D001920 ORTHO05D005408 3.4e-112 409.5 493 45.8
SHI18715 Sapria himalayana HOM05D001920 ORTHO05D005408 3.0e-108 396.4 438 50.9
Hma1.2p1_0077F.1_g039730 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 7.3e-107 391.7 450 50.4
Sed0005880 Sechium edule HOM05D001920 ORTHO05D005408 8.0e-106 388.3 400 53.8
Pp3c10_11790 Physcomitrium patens HOM05D001920 ORTHO05D005408 2.0e-104 383.6 506 42.9
CBR_g34170 Chara braunii HOM05D001920 ORTHO05D005408 9.8e-104 381.3 489 43.4
Sed0005137 Sechium edule HOM05D001920 ORTHO05D005408 4.9e-103 379.0 400 53.5
SMO356G0672 Selaginella moellendorffii HOM05D001920 ORTHO05D005408 9.2e-102 374.8 489 43.1
TPR.G14979 Trifolium pratense HOM05D001920 ORTHO05D005408 1.5e-99 367.5 404 49.8
MBI18_g38862_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 2.1e-98 363.6 476 44.3
Hma1.2p1_0196F.1_g084800 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 5.2e-97 359.0 344 55.8
Oeu003998.1 Olea europaea HOM05D001920 ORTHO05D005408 5.2e-97 359.0 467 47.5
MBI05_g36626_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 2.3e-92 343.6 435 46.9
SGA_v2.0_scaffold169G38703 Striga asiatica HOM05D001920 ORTHO05D005408 1.1e-86 324.7 473 42.7
Pp3c2_14420 Physcomitrium patens HOM05D001920 ORTHO05D005408 6.0e-85 318.9 389 45.2
Nitab4.5_0000707g0110 Nicotiana tabacum HOM05D001920 ORTHO05D005408 5.1e-84 315.8 498 40.4
AagrBONN_evm.TU.Sc2ySwM_228.4615 Anthoceros agrestis HOM05D001920 ORTHO05D005408 1.4e-73 281.2 337 47.2
Lj7C264G4 Lonicera japonica HOM05D001920 ORTHO05D005408 3.1e-73 280.0 447 39.4
Lj7C259T3 Lonicera japonica HOM05D001920 ORTHO05D005408 1.9e-70 270.8 324 48.5
PRCOL_00001520 Prasinoderma coloniale HOM05D001920 ORTHO05D005408 1.8e-65 254.2 527 34.0
SGA_v2.0_scaffold163G38013 Striga asiatica HOM05D001920 ORTHO05D005408 4.0e-65 253.1 322 47.2
Oeu004630.1 Olea europaea HOM05D001920 ORTHO05D005408 1.6e-61 241.1 484 36.6
Cre10.g439650 Chlamydomonas reinhardtii HOM05D001920 ORTHO05D005408 1.1e-54 218.4 549 28.6
MCO04G241 Micromonas commoda HOM05D001920 ORTHO05D005408 7.2e-46 189.1 435 30.8
CDE05G0360 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.2e-45 188.3 161 58.4
Migut.A00111 Erythranthe guttata HOM05D001920 ORTHO05D005408 2.2e-34 151.0 143 58.0
Gorai.009G043000 Gossypium raimondii HOM05D001920 ORTHO05D005408 1.0e-28 132.1 437 28.6
CDE05G1717 Ceratophyllum demersum HOM05D001920 ORTHO05D005408 1.4e-28 131.7 223 39.5
arahy.Tifrunner.gnm1.ann1.NPWH83 Arachis hypogaea HOM05D001920 ORTHO05D005408 3.0e-28 130.6 105 61.9
BcaNung02635 Brassica carinata HOM05D001920 ORTHO05D005408 2.0e-24 117.9 83 68.7
Eucgr.L03492 Eucalyptus grandis HOM05D001920 ORTHO05D005408 2.2e-23 114.4 95 62.1
Gohir.D05G042133 Gossypium hirsutum HOM05D001920 ORTHO05D005408 4.2e-22 110.2 226 36.3
MBI13_g05979_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D005408 1.8e-20 104.8 325 30.2
SEGI_36171 Sequoiadendron giganteum HOM05D001920 ORTHO05D000001 4.8e-18 96.7 119 44.5
Lj7A264G15 Lonicera japonica HOM05D001920 ORTHO05D005408 6.3e-18 96.3 97 53.6
TPR.G748 Trifolium pratense HOM05D001920 ORTHO05D005408 1.3e-15 88.6 68 70.6
Hma1.2p1_0196F.1_g084820 Hydrangea macrophylla HOM05D001920 ORTHO05D005408 7.2e-14 82.8 83 56.6
TPR.G36194 Trifolium pratense HOM05D001920 ORTHO05D005408 1.2e-11 75.5 71 50.7
TPR.G14973 Trifolium pratense HOM05D001920 ORTHO05D005408 3.1e-09 67.4 45 60.0
MSTRG.25967 Avicennia marina HOM05D001920 ORTHO05D005408 7.0e-09 66.2 62 53.2
Zm00001eb014540 Zea mays HOM05D000282 ORTHO05D000272 4.5e-08 63.5 69 44.9
TPR.G36118 Trifolium pratense HOM05D001920 ORTHO05D005408 1.1e-06 58.9 54 48.1


User provided reference genes

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