Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.7e-65 252.7 139 100.0
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 1.7e-57 226.1 124 93.5
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 1.0e-54 216.9 122 91.0
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 1.5e-53 213.0 124 87.9
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 1.2e-52 209.9 122 86.9
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 2.1e-52 209.1 128 81.2
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 2.1e-52 209.1 128 81.2
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 3.6e-52 208.4 122 86.1
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 4.7e-52 208.0 124 83.1
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 4.7e-52 208.0 124 83.1
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 4.7e-52 208.0 124 83.1
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 1.0e-51 206.8 124 83.9
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 1.8e-51 206.1 124 83.9
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 2.3e-51 205.7 122 85.2
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 4.0e-51 204.9 124 83.1
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 5.2e-51 204.5 122 83.6
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 5.2e-51 204.5 122 82.8
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 6.8e-51 204.1 122 83.6
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 1.2e-50 203.4 122 85.2
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 2.0e-50 202.6 122 82.8
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 2.0e-50 202.6 122 83.6
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 3.4e-50 201.8 139 74.1
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 3.4e-50 201.8 139 74.1
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 4.4e-50 201.4 122 82.0
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 4.4e-50 201.4 120 83.3
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 4.4e-50 201.4 124 81.5
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 3.7e-49 198.4 122 81.1
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 3.7e-49 198.4 124 79.0
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 4.9e-49 198.0 124 79.8
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 4.9e-49 198.0 122 81.1
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 1.1e-48 196.8 125 78.4
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 1.1e-48 196.8 123 78.9
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 4.1e-48 194.9 124 77.4
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 4.1e-48 194.9 122 79.5
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 2.7e-47 192.2 123 78.0
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 2.7e-47 192.2 124 77.4
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 5.9e-47 191.0 139 82.7
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 7.8e-47 190.7 122 80.3
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 1.0e-46 190.3 120 80.0
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 1.3e-46 189.9 123 80.5
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 1.3e-46 189.9 128 76.6
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 1.3e-46 189.9 121 80.2
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 1.7e-46 189.5 122 79.5
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 1.7e-46 189.5 122 79.5
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 3.0e-46 188.7 121 80.2
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 3.9e-46 188.3 122 78.7
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 3.9e-46 188.3 124 77.4
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 3.9e-46 188.3 121 79.3
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 3.9e-46 188.3 122 75.4
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 5.0e-46 188.0 122 78.7
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 5.0e-46 188.0 123 81.3
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 5.0e-46 188.0 139 82.0
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 6.6e-46 187.6 122 79.5
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 1.1e-45 186.8 122 77.9
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 1.5e-45 186.4 121 78.5
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 1.9e-45 186.0 121 79.3
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 4.3e-45 184.9 122 81.1
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 7.3e-45 184.1 122 74.6
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 7.3e-45 184.1 120 79.2
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 1.2e-44 183.3 125 76.8
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 1.2e-44 183.3 122 73.0
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 1.6e-44 183.0 122 76.2
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 2.1e-44 182.6 122 73.8
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 4.7e-44 181.4 122 77.0
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 1.0e-43 180.3 131 73.3
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 1.4e-43 179.9 121 76.0
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 1.8e-43 179.5 118 77.1
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 2.3e-43 179.1 118 78.8
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 5.2e-43 177.9 122 76.2
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 6.8e-43 177.6 126 71.4
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 1.5e-42 176.4 118 78.0
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 2.0e-42 176.0 122 73.8
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 3.4e-42 175.3 137 66.4
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 3.4e-42 175.3 122 75.4
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 9.8e-42 173.7 122 73.0
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 2.2e-41 172.6 121 71.9
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 2.9e-41 172.2 122 72.1
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 3.7e-41 171.8 124 72.6
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.4e-40 169.9 115 79.1
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 3.2e-40 168.7 122 71.3
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 4.1e-40 168.3 149 60.4
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 9.2e-40 167.2 124 67.7
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.2e-39 166.8 124 71.0
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 2.7e-39 165.6 124 70.2
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 6.0e-39 164.5 124 69.4
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 1.3e-38 163.3 122 67.2
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 5.0e-38 161.4 124 71.0
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 1.1e-37 160.2 129 65.1
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 1.1e-37 160.2 122 69.7
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 3.3e-37 158.7 170 52.4
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 5.6e-37 157.9 122 66.4
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 2.8e-36 155.6 114 70.2
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 8.1e-36 154.1 112 70.5
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 1.1e-35 153.7 121 63.6
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 1.4e-35 153.3 122 63.9
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 1.8e-35 152.9 120 62.5
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 3.1e-35 152.1 112 69.6
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 5.2e-35 151.4 121 63.6
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 8.9e-35 150.6 156 56.4
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 5.8e-34 147.9 122 68.0
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 3.7e-33 145.2 123 62.6
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 4.9e-33 144.8 98 76.5
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 8.3e-33 144.1 122 59.8
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 3.2e-32 142.1 121 62.8
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 4.1e-32 141.7 126 57.1
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 9.2e-32 140.6 124 61.3
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 6.0e-31 137.9 95 70.5
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 1.0e-30 137.1 90 74.4
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 2.3e-30 136.0 122 59.0
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 3.0e-30 135.6 122 59.8
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 6.6e-30 134.4 120 59.2
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 9.5e-29 130.6 67 91.0
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 3.6e-28 128.6 93 66.7
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 4.7e-28 128.3 113 59.3
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 2.3e-27 125.9 122 57.4
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 5.2e-27 124.8 122 57.4
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 6.8e-27 124.4 114 58.8
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 3.4e-26 122.1 67 85.1
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 9.9e-26 120.6 108 58.3
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 8.4e-25 117.5 170 42.4
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 1.6e-23 113.2 89 64.0
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 3.5e-23 112.1 67 73.1
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 1.0e-22 110.5 83 65.1
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 4.3e-21 105.1 105 60.0
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 1.9e-16 89.7 62 69.4
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 7.1e-16 87.8 83 60.2
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 9.6e-13 77.4 49 73.5
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 1.3e-12 77.0 48 70.8
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 2.4e-11 72.8 73 49.3
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 1.3e-09 67.0 48 68.8
SHI21665 Sapria himalayana HOM05D000105 ORTHO05D000023 3.8e-09 65.5 49 69.4
Nn3g16162 Nelumbo nucifera HOM05D006060 ORTHO05D007268 5.1e-06 55.1 28 96.4
Duzib251G0730 Durio zibethinus HOM05D006060 ORTHO05D007268 6.6e-06 54.7 39 61.5


User provided reference genes

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