Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0181 Fragaria x ananassa HOM05D004479 ORTHO05D005597 5.8e-279 963.8 554 100.0
FAN17G0751 Fragaria x ananassa HOM05D004479 ORTHO05D005597 1.0e-262 909.8 524 94.5
FvH4_4g04880 Fragaria vesca HOM05D004479 ORTHO05D005597 8.0e-244 847.0 520 92.7
RcHm_v2.0_Chr4g0395701 Rosa chinensis HOM05D004479 ORTHO05D005597 1.0e-230 803.5 526 87.8
Prupe.1G049400 Prunus persica HOM05D004479 ORTHO05D005597 7.8e-207 724.2 522 80.7
MD16G1227300 Malus domestica HOM05D004479 ORTHO05D005597 5.6e-205 718.0 518 78.8
RcHm_v2.0_Chr4g0395721 Rosa chinensis HOM05D004479 ORTHO05D005597 8.1e-196 687.6 443 88.9
Gohir.A01G221776 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.9e-181 639.8 524 72.5
ClCG07G014640 Citrullus lanatus HOM05D004479 ORTHO05D005597 3.9e-174 615.5 512 69.7
Gorai.010G142700 Gossypium raimondii HOM05D004479 ORTHO05D005597 8.7e-174 614.4 526 70.2
QL05p084035 Quercus lobata HOM05D004479 ORTHO05D005597 2.5e-173 612.8 518 70.1
Actinidia21882 Actinidia chinensis HOM05D004479 ORTHO05D005597 2.8e-172 609.4 526 69.0
Ciclev10025265m.g Citrus clementina HOM05D004479 ORTHO05D005597 1.8e-171 606.7 531 69.3
TAR626G0959 Trochodendron aralioides HOM05D004479 ORTHO05D005597 3.1e-171 605.9 539 68.6
CANSAT78G0411 Cannabis sativa HOM05D004479 ORTHO05D005597 2.9e-169 599.4 499 72.1
Manes.06G177300 Manihot esculenta HOM05D004479 ORTHO05D005597 3.0e-166 589.3 519 69.7
Dinv09182 Davidia involucrata HOM05D004479 ORTHO05D005597 1.1e-163 580.9 526 68.1
CsaV3_3G030520 Cucumis sativus L. HOM05D004479 ORTHO05D005597 3.4e-162 575.9 520 65.8
COL.COLO4_31168 Corchorus olitorius HOM05D004479 ORTHO05D005597 4.9e-161 572.0 498 68.9
Nn7g37005 Nelumbo nucifera HOM05D004479 ORTHO05D005597 1.4e-160 570.5 532 67.5
TPR.G5557 Trifolium pratense HOM05D004479 ORTHO05D005597 5.5e-160 568.5 509 67.2
MELO3C026710.2 Cucumis melo HOM05D004479 ORTHO05D005597 7.1e-160 568.2 512 66.8
Medtr5g013930 Medicago truncatula HOM05D004479 ORTHO05D005597 1.3e-158 563.9 512 66.8
arahy.Tifrunner.gnm1.ann1.HYUF3S Arachis hypogaea HOM05D004479 ORTHO05D005597 1.8e-158 563.5 502 67.9
Cc04_g00200 Coffea canephora HOM05D004479 ORTHO05D005597 3.9e-158 562.4 497 67.8
arahy.Tifrunner.gnm1.ann1.SFLF9H Arachis hypogaea HOM05D004479 ORTHO05D005597 5.1e-158 562.0 502 67.7
TWI09G1491 Tripterygium wilfordii HOM05D004479 ORTHO05D005597 2.5e-157 559.7 497 66.8
Atru.chr1.2695 Acer truncatum HOM05D004479 ORTHO05D005597 4.3e-157 558.9 497 67.8
GSVIVG01029540001 Vitis vinifera HOM05D004479 ORTHO05D005597 1.3e-156 557.4 526 65.6
Duzib192G0061 Durio zibethinus HOM05D004479 ORTHO05D005597 8.2e-156 554.7 496 66.3
Gohir.A06G118600 Gossypium hirsutum HOM05D004479 ORTHO05D005597 2.0e-154 550.1 529 63.9
Eucgr.J03177 Eucalyptus grandis HOM05D004479 ORTHO05D005597 1.3e-153 547.4 535 63.0
EL10Ac7g18162 Beta vulgaris HOM05D004479 ORTHO05D005597 2.2e-153 546.6 522 62.5
Potri.010G253100 Populus trichocarpa HOM05D004479 ORTHO05D005597 1.1e-152 544.3 521 62.6
VMungo1080G0276 Vigna mungo HOM05D004479 ORTHO05D005597 1.1e-152 544.3 502 66.9
Thecc.06G058800 Theobroma cacao HOM05D004479 ORTHO05D005597 1.0e-150 537.7 518 63.7
Ca_21726_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 8.7e-150 534.6 498 65.7
Glyma.12G188300 Glycine max HOM05D004479 ORTHO05D005597 1.1e-149 534.3 502 64.9
THA.LOC104800314 Tarenaya hassleriana HOM05D004479 ORTHO05D005597 2.5e-149 533.1 514 62.5
HanXRQChr12g0359691 Helianthus annuus HOM05D004479 ORTHO05D005597 3.7e-148 529.3 525 64.4
Sed0022371 Sechium edule HOM05D004479 ORTHO05D005597 6.3e-148 528.5 494 66.2
MSTRG.10879 Avicennia marina HOM05D004479 ORTHO05D005597 1.8e-147 526.9 527 63.6
Phvul.005G185100 Phaseolus vulgaris HOM05D004479 ORTHO05D005597 4.5e-146 522.3 502 64.5
Cfa002151 Carpinus fangiana HOM05D004479 ORTHO05D005597 5.9e-146 521.9 444 69.4
Sabra10G0196900 Salix brachista HOM05D004479 ORTHO05D005597 1.7e-145 520.4 614 54.7
PGR119G2289 Punica granatum HOM05D004479 ORTHO05D005597 1.1e-144 517.7 542 62.5
Lsat_1_v5_gn_5_137281 Lactuca sativa HOM05D004479 ORTHO05D005597 2.1e-143 513.5 505 65.5
Migut.I01194 Erythranthe guttata HOM05D004479 ORTHO05D005597 1.8e-142 510.4 521 61.2
Nitab4.5_0004918g0010 Nicotiana tabacum HOM05D004479 ORTHO05D005597 8.8e-142 508.1 530 63.8
Rhsim08G0249800 Rhododendron simsii HOM05D004479 ORTHO05D005597 2.5e-141 506.5 519 61.5
Hund18609 Selenicereus undatus HOM05D004479 ORTHO05D005597 4.3e-141 505.8 530 58.9
Solyc03g123960.3 Solanum lycopersicum HOM05D004479 ORTHO05D005597 4.3e-141 505.8 514 63.2
Aqoxy7G02788 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 2.8e-140 503.1 521 60.8
Aa31LG2G7330 Aethionema arabicum HOM05D004479 ORTHO05D005597 4.8e-140 502.3 523 60.6
Nitab4.5_0002664g0040 Nicotiana tabacum HOM05D004479 ORTHO05D005597 3.1e-139 499.6 546 61.2
Sp2g14070 Schrenkiella parvula HOM05D004479 ORTHO05D005597 4.1e-139 499.2 511 61.4
CSS0019442 Camellia sinensis var. sinensis HOM05D004479 ORTHO05D005597 5.3e-139 498.8 502 63.5
Hma1.2p1_1111F.1_g258400 Hydrangea macrophylla HOM05D004479 ORTHO05D005597 6.9e-139 498.4 484 65.9
Lj3g0018425 Lotus japonicus HOM05D004479 ORTHO05D005597 9.1e-139 498.0 518 62.5
MBI13_g34036_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 9.1e-139 498.0 511 61.8
ECA234G3188 Erigeron canadensis HOM05D001810 ORTHO05D005662 1.7e-137 493.8 515 61.0
Sopen03g041690 Solanum pennellii HOM05D004479 ORTHO05D005597 3.2e-136 489.6 546 59.5
CAN.G790.12 Capsicum annuum HOM05D004479 ORTHO05D005597 5.5e-136 488.8 507 61.9
CARHR213680 Cardamine hirsuta HOM05D004479 ORTHO05D005597 1.6e-135 487.3 511 61.8
PSO170G2367 Papaver somniferum HOM05D004479 ORTHO05D005597 1.8e-134 483.8 534 59.2
Psat5g288040 Pisum sativum HOM05D004479 ORTHO05D005597 3.1e-131 473.0 451 65.0
MBI13_g01743_MAGBIO Magnolia biondii HOM05D004479 ORTHO05D005597 3.5e-130 469.5 512 59.4
Ah.15g094320 Amaranthus hybridus HOM05D004479 ORTHO05D005597 5.9e-130 468.8 520 57.9
Sc12g0011150 Simmondsia chinensis HOM05D004479 ORTHO05D005597 7.7e-130 468.4 520 60.4
AT2G03070 Arabidopsis thaliana HOM05D004479 ORTHO05D005597 2.9e-129 466.5 509 59.9
Oeu049641.1 Olea europaea HOM05D004479 ORTHO05D005597 3.8e-129 466.1 563 52.4
PSO384G0383 Papaver somniferum HOM05D004479 ORTHO05D005597 6.5e-129 465.3 531 58.4
ATR0626G211 Amborella trichopoda HOM05D004479 ORTHO05D005597 2.5e-128 463.4 498 57.0
PSO063G0217 Papaver somniferum HOM05D004479 ORTHO05D005597 6.1e-127 458.8 511 58.7
Gohir.D06G122500 Gossypium hirsutum HOM05D004479 ORTHO05D005597 1.4e-126 457.6 381 70.6
unitig_748.g8028 Utricularia gibba HOM05D004479 ORTHO05D005597 3.9e-126 456.1 534 51.9
Zm00001eb320420 Zea mays HOM05D004479 ORTHO05D005597 2.6e-125 453.4 516 54.1
Hund18598 Selenicereus undatus HOM05D004479 ORTHO05D005597 2.8e-124 449.9 456 61.0
vmacro18747 Vaccinium macrocarpon HOM05D004479 ORTHO05D005597 6.3e-124 448.7 575 51.7
Glyma.13G372700 Glycine max HOM05D004479 ORTHO05D005597 1.3e-121 441.0 457 63.5
HPP92_008247 Vanilla planifolia HOM05D004479 ORTHO05D005597 9.4e-120 434.9 521 52.8
Lj6C65T2 Lonicera japonica HOM05D004479 ORTHO05D005597 8.0e-119 431.8 387 69.0
Ca_04816_v3 Cicer arietinum L. HOM05D004479 ORTHO05D005597 3.0e-118 429.9 497 57.3
AUR62001343 Chenopodium quinoa HOM05D004479 ORTHO05D005597 1.5e-117 427.6 528 52.1
Carub.0005s0192 Capsella rubella HOM05D004479 ORTHO05D005597 1.3e-116 424.5 518 55.6
CDE02G4004 Ceratophyllum demersum HOM05D004479 ORTHO05D005597 1.6e-114 417.5 501 52.3
Thhalv10004003m.g Eutrema salsugineum HOM05D004479 ORTHO05D005597 2.2e-113 413.7 513 52.4
BcaB07g30687 Brassica carinata HOM05D004479 ORTHO05D005597 2.9e-113 413.3 504 56.2
AL5G12650 Arabidopsis lyrata HOM05D004479 ORTHO05D005597 5.0e-113 412.5 504 55.4
SalBow6G0079 Salvia bowleyana HOM05D004479 ORTHO05D005597 8.5e-113 411.8 544 49.6
Peaxi162Scf00038g02656 Petunia axillaris HOM05D004479 ORTHO05D005597 1.2e-111 407.9 507 51.1
A09p24080 Brassica napus HOM05D004479 ORTHO05D005597 1.8e-110 404.1 507 56.6
BraA09t38008Z Brassica rapa HOM05D004479 ORTHO05D005597 4.0e-110 402.9 508 56.7
Nitab4.5_0005664g0060 Nicotiana tabacum HOM05D004479 ORTHO05D005597 5.2e-110 402.5 494 50.8
BcaC04g21507 Brassica carinata HOM05D004479 ORTHO05D005597 8.8e-110 401.7 505 54.5
AUR62025661 Chenopodium quinoa HOM05D004479 ORTHO05D005597 8.8e-110 401.7 448 54.2
C09p30960 Brassica napus HOM05D004479 ORTHO05D005597 2.0e-109 400.6 505 54.5
BolC9t55955H Brassica oleracea HOM05D004479 ORTHO05D005597 2.0e-109 400.6 505 54.5
SGA_v2.0_scaffold122G33268 Striga asiatica HOM05D004479 ORTHO05D005597 2.2e-108 397.1 371 66.0
DCAR_030619 Daucus carota HOM05D004479 ORTHO05D005597 1.3e-105 387.9 352 64.5
PGSC0003DMG400009164 Solanum tuberosum HOM05D004479 ORTHO05D005597 5.2e-102 375.9 375 63.7
PSO836G0001 Papaver somniferum HOM05D004479 ORTHO05D005597 1.0e-89 335.1 419 55.8
Dinv37782 Davidia involucrata HOM05D004479 ORTHO05D005597 1.7e-84 317.8 311 68.5
Haze_16264 Corylus avellana HOM05D004479 ORTHO05D005597 9.2e-75 285.4 204 73.0
Os03g0423800 Oryza sativa ssp. japonica HOM05D004479 ORTHO05D005597 3.3e-72 276.9 247 61.1
Dinv37783 Davidia involucrata HOM05D004479 ORTHO05D005597 4.7e-71 273.1 217 71.0
Cpa.g.sc1515.2 Carica papaya HOM05D004479 ORTHO05D005597 6.2e-71 272.7 204 67.6
BcaC06g31203 Brassica carinata HOM05D004479 ORTHO05D005597 1.4e-59 235.0 255 52.9
BraA06t27217Z Brassica rapa HOM05D004479 ORTHO05D005597 1.0e-57 228.8 229 55.9
BolC7t43874H Brassica oleracea HOM05D004479 ORTHO05D005597 1.3e-57 228.4 231 56.7
Pp3c18_4030 Physcomitrium patens HOM05D004479 ORTHO05D005597 1.5e-56 224.9 302 45.0
BcaC06g34021 Brassica carinata HOM05D004479 ORTHO05D005597 1.9e-56 224.6 229 56.3
A06p43310 Brassica napus HOM05D004479 ORTHO05D005597 6.4e-52 209.5 260 48.5
Psat1g118080 Pisum sativum HOM05D004479 ORTHO05D005597 1.9e-51 208.0 168 64.9
Mapoly0029s0023 Marchantia polymorpha HOM05D004479 ORTHO05D005597 1.8e-49 201.4 336 40.8
Oeu062492.1 Olea europaea HOM05D004479 ORTHO05D005597 3.9e-49 200.3 232 51.7
AagrBONN_evm.TU.Sc2ySwM_117.2251 Anthoceros agrestis HOM05D004479 ORTHO05D005597 9.3e-43 179.1 203 48.8
SMO114G0145 Selaginella moellendorffii HOM05D004479 ORTHO05D005597 9.3e-43 179.1 272 39.7
CiPaw.01G090700 Carya illinoinensis HOM05D004479 ORTHO05D005597 5.1e-41 173.3 177 59.3
C07p33640 Brassica napus HOM05D004479 ORTHO05D005597 6.7e-41 172.9 231 48.9
AagrBONN_evm.TU.Sc2ySwM_117.1357 Anthoceros agrestis HOM05D004479 ORTHO05D005597 9.6e-40 169.1 204 45.6
Aqoxy377s002 Aquilegia oxysepala HOM05D004479 ORTHO05D005597 9.0e-38 162.5 144 66.7
CBR_g41305 Chara braunii HOM05D004479 ORTHO05D005597 4.2e-35 153.7 275 37.8
SEGI_11469 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 2.3e-33 147.9 148 52.7
Psat0s1227g0080 Pisum sativum HOM05D000020 ORTHO05D015801 3.9e-33 147.1 164 56.7
CARHR145470 Cardamine hirsuta HOM05D004479 ORTHO05D005597 1.4e-30 138.7 105 70.5
Psat0s1762g0040 Pisum sativum HOM05D004479 ORTHO05D005597 1.4e-30 138.7 184 46.2
COL.COLO4_31578 Corchorus olitorius HOM05D001810 ORTHO05D005662 2.4e-30 137.9 204 45.6
QL05p046913 Quercus lobata HOM05D004479 ORTHO05D005597 1.4e-22 112.1 153 53.6
FAN12G4029 Fragaria x ananassa HOM05D002474 ORTHO05D007142 1.8e-22 111.7 69 82.6
Cpa.g.sc1515.1 Carica papaya HOM05D004479 ORTHO05D005597 1.0e-20 105.9 108 77.8
QL03p033126 Quercus lobata HOM05D004479 ORTHO05D005597 1.1e-19 102.4 74 71.6
Actinidia21652 Actinidia chinensis HOM05D004479 ORTHO05D005597 1.2e-18 99.0 65 73.8
Psat7g008520 Pisum sativum HOM05D004479 ORTHO05D005597 1.6e-18 98.6 75 73.3
Psat0s2660g0040 Pisum sativum HOM05D000020 ORTHO05D015801 3.0e-17 94.4 85 62.4
SEGI_18721 Sequoiadendron giganteum HOM05D004479 ORTHO05D005597 3.3e-16 90.9 91 53.8
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 4.8e-15 87.0 69 66.7
SHI24407 Sapria himalayana HOM05D004479 ORTHO05D005597 2.4e-14 84.7 224 37.1
SHI42840 Sapria himalayana HOM05D004479 ORTHO05D005597 3.5e-13 80.9 133 42.1
SHI42601 Sapria himalayana HOM05D004479 ORTHO05D005597 1.1e-11 75.9 152 36.8
Cpa.g.sc155.18 Carica papaya HOM05D004479 ORTHO05D005597 2.5e-11 74.7 53 73.6
COL.COLO4_18371 Corchorus olitorius HOM05D004479 ORTHO05D005597 9.4e-11 72.8 69 47.8
Psat0s1227g0040 Pisum sativum HOM05D000280 ORTHO05D015801 8.0e-10 69.7 52 71.2
Psat3g175600 Pisum sativum HOM05D004479 ORTHO05D005597 1.8e-09 68.6 48 75.0
BcaC04g22058 Brassica carinata HOM05D006908 ORTHO05D008662 1.1e-08 65.9 38 84.2
C09p24010 Brassica napus HOM05D002960 ORTHO05D042139 1.1e-08 65.9 38 84.2
BolC9t55321H Brassica oleracea HOM05D002960 ORTHO05D042139 1.1e-08 65.9 38 84.2
Peaxi162Scf00038g02640 Petunia axillaris HOM05D004479 ORTHO05D029161 1.1e-08 65.9 71 54.9
SHI31116 Sapria himalayana HOM05D004479 ORTHO05D005597 2.0e-08 65.1 53 56.6
COL.COLO4_27264 Corchorus olitorius HOM05D004479 ORTHO05D005597 5.7e-08 63.5 71 42.3
SHI42976 Sapria himalayana HOM05D004479 ORTHO05D005597 7.5e-08 63.2 116 38.8
Haze_18674 Corylus avellana HOM05D004479 ORTHO05D005597 6.3e-07 60.1 38 78.9
SHI31115 Sapria himalayana HOM05D004479 ORTHO05D005597 1.4e-06 58.9 42 69.0
QL03p033134 Quercus lobata HOM05D004479 ORTHO05D005597 2.4e-06 58.2 43 72.1
DCAR_030620 Daucus carota HOM05D004479 ORTHO05D005597 4.1e-06 57.4 53 64.2
QL08p038027 Quercus lobata HOM05D004479 ORTHO05D337893 4.1e-06 57.4 199 30.2
SHI49595 Sapria himalayana HOM05D004479 ORTHO05D005597 5.3e-06 57.0 111 38.7


User provided reference genes

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