Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0164 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.0e-285 986.9 860 100.0
FvH4_4g12190 Fragaria vesca HOM05D003848 ORTHO05D004616 1.3e-163 581.3 495 96.0
FAN07G0259 Fragaria x ananassa HOM05D003848 ORTHO05D004616 2.6e-161 573.5 498 95.2
FAN17G2080 Fragaria x ananassa HOM05D003848 ORTHO05D004616 3.9e-157 559.7 496 94.2
RcHm_v2.0_Chr4g0409951 Rosa chinensis HOM05D003848 ORTHO05D004616 7.0e-138 495.7 495 86.3
FAN22G1718 Fragaria x ananassa HOM05D003848 ORTHO05D004616 1.5e-124 451.4 421 99.0
Prupe.8G239200 Prunus persica HOM05D003848 ORTHO05D004616 9.5e-111 405.6 518 74.7
MD11G1283600 Malus domestica HOM05D003848 ORTHO05D004616 2.6e-100 370.9 518 74.1
MD03G1262900 Malus domestica HOM05D003848 ORTHO05D004616 4.9e-99 366.7 543 69.8
CiPaw.08G106300 Carya illinoinensis HOM05D003848 ORTHO05D004616 3.3e-87 327.4 512 62.7
FAN22G1557 Fragaria x ananassa HOM05D003848 ORTHO05D004616 4.3e-87 327.0 169 100.0
Cfa006159 Carpinus fangiana HOM05D003848 ORTHO05D004616 8.1e-86 322.8 507 68.6
FAN22G0082 Fragaria x ananassa HOM05D003848 ORTHO05D035678 1.5e-84 318.5 193 99.5
VMungo0720G2447 Vigna mungo HOM05D003848 ORTHO05D004616 1.9e-82 311.6 509 67.0
Lj5g0005692 Lotus japonicus HOM05D003848 ORTHO05D004616 4.2e-82 310.5 551 60.1
Haze_16066 Corylus avellana HOM05D003848 ORTHO05D004616 5.4e-82 310.1 503 67.4
arahy.Tifrunner.gnm1.ann1.ARWK2P Arachis hypogaea HOM05D003848 ORTHO05D004616 1.6e-81 308.5 549 59.9
Glyma.10G027400 Glycine max HOM05D003848 ORTHO05D004616 2.7e-81 307.8 508 68.3
arahy.Tifrunner.gnm1.ann1.X3NAFX Arachis hypogaea HOM05D003848 ORTHO05D004616 3.5e-81 307.4 546 61.2
Psat4g156760 Pisum sativum HOM05D003848 ORTHO05D004616 4.6e-81 307.0 510 65.7
QL01p012613 Quercus lobata HOM05D003848 ORTHO05D004616 4.6e-81 307.0 515 64.5
Cfa003508 Carpinus fangiana HOM05D003848 ORTHO05D004616 7.8e-81 306.2 502 60.4
CsaV3_3G039920 Cucumis sativus L. HOM05D003848 ORTHO05D004616 3.0e-80 304.3 555 63.8
Phvul.007G172800 Phaseolus vulgaris HOM05D003848 ORTHO05D004616 3.0e-80 304.3 503 67.0
Potri.002G051500 Populus trichocarpa HOM05D003848 ORTHO05D004616 3.0e-80 304.3 518 65.3
GSVIVG01001165001 Vitis vinifera HOM05D003848 ORTHO05D004616 5.1e-80 303.5 500 62.8
MELO3C009735.2 Cucumis melo HOM05D003848 ORTHO05D004616 1.9e-79 301.6 560 60.9
Haze_04691 Corylus avellana HOM05D003848 ORTHO05D004616 2.5e-79 301.2 503 66.2
Medtr8g028640 Medicago truncatula HOM05D003848 ORTHO05D004616 3.3e-79 300.8 504 66.9
TWI59G1147 Tripterygium wilfordii HOM05D003848 ORTHO05D004616 1.6e-78 298.5 525 64.2
COL.COLO4_09072 Corchorus olitorius HOM05D003848 ORTHO05D004616 6.2e-78 296.6 512 47.3
Glyma.02G146600 Glycine max HOM05D003848 ORTHO05D004616 1.4e-77 295.4 513 66.7
Thecc.01G276600 Theobroma cacao HOM05D003848 ORTHO05D004616 1.4e-77 295.4 541 61.0
Gorai.008G004000 Gossypium raimondii HOM05D003848 ORTHO05D004616 2.0e-76 291.6 585 62.6
Gohir.D12G004200 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.3e-75 288.9 585 62.6
ClCG10G016420 Citrullus lanatus HOM05D003848 ORTHO05D004616 4.9e-75 287.0 557 61.6
Lalb_Chr06g0162931 Lupinus albus HOM05D003848 ORTHO05D004616 6.4e-75 286.6 530 66.4
Gohir.A12G004500 Gossypium hirsutum HOM05D003848 ORTHO05D004616 1.1e-74 285.8 534 60.1
CANSAT01G1819 Cannabis sativa HOM05D003848 ORTHO05D004616 1.9e-74 285.0 432 69.2
Ciclev10019827m.g Citrus clementina HOM05D003848 ORTHO05D004616 7.1e-74 283.1 517 68.7
Atru.chr5.1462 Acer truncatum HOM05D003848 ORTHO05D004616 1.2e-73 282.3 524 58.8
Ca_09749_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 3.9e-72 277.3 530 64.7
Cpa.g.sc52.49 Carica papaya HOM05D003848 ORTHO05D004616 5.1e-72 276.9 542 62.0
Aqoxy2G03377 Aquilegia oxysepala HOM05D003848 ORTHO05D004616 8.7e-72 276.2 540 54.3
PGR119G0967 Punica granatum HOM05D003848 ORTHO05D004616 3.3e-71 274.2 535 63.9
Dinv32920 Davidia involucrata HOM05D003848 ORTHO05D004616 2.8e-70 271.2 402 66.9
Peaxi162Scf00217g00025 Petunia axillaris HOM05D003848 ORTHO05D004616 3.7e-70 270.8 545 61.8
Sabra05G0161100 Salix brachista HOM05D003848 ORTHO05D004616 4.8e-70 270.4 521 59.9
Cc00_g04130 Coffea canephora HOM05D003848 ORTHO05D004616 6.2e-70 270.0 459 64.1
Hma1.2p1_0822F.1_g224390 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 6.2e-70 270.0 468 62.8
Potri.005G210900 Populus trichocarpa HOM05D003848 ORTHO05D004616 6.2e-70 270.0 402 69.9
Oeu028073.1 Olea europaea HOM05D003848 ORTHO05D004616 3.1e-69 267.7 370 72.2
vmacro18863 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 6.9e-69 266.5 483 69.6
ATR0332G007 Amborella trichopoda HOM05D003848 ORTHO05D004616 1.2e-68 265.8 176 80.1
Nitab4.5_0005156g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 2.6e-68 264.6 407 68.8
TPR.G28157 Trifolium pratense HOM05D003848 ORTHO05D004616 1.3e-67 262.3 172 81.4
Nitab4.5_0006700g0010 Nicotiana tabacum HOM05D003848 ORTHO05D004616 2.2e-67 261.5 408 74.8
Manes.05G077600 Manihot esculenta HOM05D003848 ORTHO05D004616 2.9e-67 261.2 535 55.9
ATR0824G270 Amborella trichopoda HOM05D003848 ORTHO05D004616 3.8e-67 260.8 175 78.9
PGSC0003DMG400046756 Solanum tuberosum HOM05D003848 ORTHO05D004616 3.8e-67 260.8 412 71.4
Solyc11g071660.1 Solanum lycopersicum HOM05D003848 ORTHO05D004616 6.4e-67 260.0 412 69.7
CAN.G439.4 Capsicum annuum HOM05D003848 ORTHO05D004616 2.4e-66 258.1 405 67.4
Actinidia24902 Actinidia chinensis HOM05D003848 ORTHO05D004616 4.2e-66 257.3 545 61.3
Manes.01G206800 Manihot esculenta HOM05D003848 ORTHO05D004616 1.2e-65 255.8 530 51.1
SHI27493 Sapria himalayana HOM05D004058 ORTHO05D001984 2.1e-65 255.0 164 81.7
MBI07_g03188_MAGBIO Magnolia biondii HOM05D003848 ORTHO05D004616 2.7e-65 254.6 515 53.0
Rhsim01G0273900 Rhododendron simsii HOM05D003848 ORTHO05D004616 7.9e-65 253.1 420 63.3
TAR369G1095 Trochodendron aralioides HOM05D003848 ORTHO05D004616 1.0e-64 252.7 542 51.3
Oeu041715.2 Olea europaea HOM05D003848 ORTHO05D004616 1.8e-64 251.9 496 55.2
SGA_v2.0_scaffold1G00491 Striga asiatica HOM05D003848 ORTHO05D004616 1.8e-64 251.9 510 64.5
vmacro19513 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 2.3e-64 251.5 484 61.6
Sopen11g029330 Solanum pennellii HOM05D003848 ORTHO05D004616 3.0e-64 251.1 553 56.8
unitig_0.g1040 Utricularia gibba HOM05D003848 ORTHO05D004616 3.9e-64 250.8 386 60.6
CDE06G2067 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 8.7e-64 249.6 175 78.3
SEGI_20713 Sequoiadendron giganteum HOM05D003848 ORTHO05D004616 8.7e-64 249.6 180 75.6
Lj2C1116T3 Lonicera japonica HOM05D003848 ORTHO05D004616 1.1e-63 249.2 519 61.3
Mapoly0051s0007 Marchantia polymorpha HOM05D003848 ORTHO05D004616 1.5e-63 248.8 150 84.7
AagrBONN_evm.TU.Sc2ySwM_362.1784 Anthoceros agrestis HOM05D003848 ORTHO05D004616 2.5e-63 248.1 169 76.9
Nn1g02285 Nelumbo nucifera HOM05D003848 ORTHO05D004616 3.3e-63 247.7 524 60.7
THA.LOC104801238 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 5.6e-63 246.9 425 69.9
AT4G02720 Arabidopsis thaliana HOM05D003848 ORTHO05D004616 7.4e-63 246.5 405 73.3
BcaB01g02014 Brassica carinata HOM05D003848 ORTHO05D004616 9.6e-63 246.1 398 66.8
Sed0011367 Sechium edule HOM05D003848 ORTHO05D004616 1.3e-62 245.7 506 63.2
Zm00001eb314820 Zea mays HOM05D003848 ORTHO05D004616 1.6e-62 245.4 399 66.2
Aa31LG5G2360 Aethionema arabicum HOM05D003848 ORTHO05D004616 2.1e-62 245.0 424 70.3
Pp3c9_17960 Physcomitrium patens HOM05D003848 ORTHO05D004616 2.1e-62 245.0 176 75.0
TAR633G0718 Trochodendron aralioides HOM05D003848 ORTHO05D004616 2.1e-62 245.0 554 58.3
ECA248G3600 Erigeron canadensis HOM05D003848 ORTHO05D004616 6.2e-62 243.4 420 65.5
Cc01_g10690 Coffea canephora HOM05D003848 ORTHO05D004616 8.2e-62 243.0 598 51.7
THA.LOC104825995 Tarenaya hassleriana HOM05D003848 ORTHO05D004616 8.2e-62 243.0 417 69.8
Carub.0006s3439 Capsella rubella HOM05D003848 ORTHO05D004616 1.1e-61 242.7 412 72.1
Lsat_1_v5_gn_5_184160 Lactuca sativa HOM05D003848 ORTHO05D004616 1.1e-61 242.7 400 73.8
HPP92_009020 Vanilla planifolia HOM05D003848 ORTHO05D004616 2.4e-61 241.5 481 52.0
Thhalv10028691m.g Eutrema salsugineum HOM05D003848 ORTHO05D004616 3.1e-61 241.1 401 73.8
HanXRQChr01g0002971 Helianthus annuus HOM05D003848 ORTHO05D004616 4.0e-61 240.7 429 65.0
MSTRG.21553 Avicennia marina HOM05D003848 ORTHO05D004616 5.3e-61 240.4 565 54.3
CBR_g4136 Chara braunii HOM05D003848 ORTHO05D004616 1.2e-60 239.2 151 82.1
Lj1C175T4 Lonicera japonica HOM05D003848 ORTHO05D004616 1.2e-60 239.2 530 59.4
AL6G50290 Arabidopsis lyrata HOM05D003848 ORTHO05D004616 2.0e-60 238.4 406 72.2
AagrBONN_evm.TU.Sc2ySwM_344.5133 Anthoceros agrestis HOM05D003848 ORTHO05D004616 2.6e-60 238.0 134 88.1
QL03p072399 Quercus lobata HOM05D003848 ORTHO05D004616 2.6e-60 238.0 495 50.7
Sp6g02650 Schrenkiella parvula HOM05D003848 ORTHO05D004616 3.4e-60 237.7 409 72.1
Hund11854 Selenicereus undatus HOM05D003848 ORTHO05D004616 3.4e-60 237.7 167 78.4
Ah.02g110950 Amaranthus hybridus HOM05D003848 ORTHO05D004616 5.8e-60 236.9 149 83.9
DCAR_000720 Daucus carota HOM05D003848 ORTHO05D004616 5.8e-60 236.9 462 65.2
Migut.D00312 Erythranthe guttata HOM05D003848 ORTHO05D004616 7.6e-60 236.5 544 57.4
AUR62003538 Chenopodium quinoa HOM05D003848 ORTHO05D004616 1.7e-59 235.3 175 73.7
SMO231G0049 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 3.8e-59 234.2 151 80.8
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 3.8e-59 234.2 151 80.8
Sc24g0003320 Simmondsia chinensis HOM05D003848 ORTHO05D004616 3.8e-59 234.2 532 55.6
BolC8t51344H Brassica oleracea HOM05D003848 ORTHO05D004616 1.9e-58 231.9 398 58.5
Duzib177G1090 Durio zibethinus HOM05D003848 ORTHO05D004616 9.3e-58 229.6 165 76.4
AUR62017852 Chenopodium quinoa HOM05D003848 ORTHO05D004616 2.1e-57 228.4 379 62.5
CARHR251050 Cardamine hirsuta HOM05D003848 ORTHO05D004616 3.5e-57 227.6 399 72.4
BcaC01g01560 Brassica carinata HOM05D003848 ORTHO05D004616 1.3e-56 225.7 166 72.9
C03p93080 Brassica napus HOM05D003848 ORTHO05D004616 1.8e-56 225.3 157 74.5
EL10Ac5g10556 Beta vulgaris HOM05D003848 ORTHO05D004616 3.0e-56 224.6 518 60.0
C08p37610 Brassica napus HOM05D003848 ORTHO05D004616 5.1e-56 223.8 397 58.7
PSO210G3188 Papaver somniferum HOM05D003848 ORTHO05D004616 8.7e-56 223.0 148 80.4
BolC9t53150H Brassica oleracea HOM05D003848 ORTHO05D004616 1.1e-55 222.6 399 63.4
PSO832G2619 Papaver somniferum HOM05D003848 ORTHO05D004616 1.1e-55 222.6 148 80.4
Rhsim10G0030500 Rhododendron simsii HOM05D003848 ORTHO05D004616 5.7e-55 220.3 384 58.3
BraA09t35861Z Brassica rapa HOM05D003848 ORTHO05D004616 9.7e-55 219.5 397 61.2
A09p02120 Brassica napus HOM05D003848 ORTHO05D004616 1.6e-54 218.8 398 62.1
BcaC04g24009 Brassica carinata HOM05D003848 ORTHO05D004616 4.8e-54 217.2 396 62.6
C03p93150 Brassica napus HOM05D003848 ORTHO05D004616 4.8e-54 217.2 140 79.3
BolC3t21610H Brassica oleracea HOM05D003848 ORTHO05D004616 5.3e-53 213.8 144 75.0
BcaC01g01554 Brassica carinata HOM05D003848 ORTHO05D004616 9.0e-53 213.0 117 89.7
C03p93100 Brassica napus HOM05D003848 ORTHO05D004616 9.0e-53 213.0 117 89.7
BcaC01g01558 Brassica carinata HOM05D003848 ORTHO05D004616 4.5e-52 210.7 116 89.7
C03p93070 Brassica napus HOM05D003848 ORTHO05D004616 4.5e-52 210.7 116 89.7
C09p02220 Brassica napus HOM05D003848 ORTHO05D004616 2.9e-51 208.0 184 61.4
TPR.G23082 Trifolium pratense HOM05D003848 ORTHO05D004616 1.1e-50 206.1 116 89.7
BolC3t21613H Brassica oleracea HOM05D003848 ORTHO05D004616 3.2e-50 204.5 117 86.3
A09p54740 Brassica napus HOM05D003848 ORTHO05D004616 4.2e-50 204.1 113 89.4
BraA04t17534Z Brassica rapa HOM05D003848 ORTHO05D004616 7.2e-50 203.4 168 67.3
A04p19390 Brassica napus HOM05D003848 ORTHO05D004616 2.1e-49 201.8 169 66.3
A09p30470 Brassica napus HOM05D003848 ORTHO05D004616 2.1e-49 201.8 116 86.2
C09p02210 Brassica napus HOM05D003848 ORTHO05D004616 2.7e-49 201.4 113 88.5
BcaC01g01561 Brassica carinata HOM05D003848 ORTHO05D004616 3.9e-48 197.6 114 86.0
BcaC02g08380 Brassica carinata HOM05D003848 ORTHO05D004616 1.1e-47 196.1 169 65.7
C04p54970 Brassica napus HOM05D003848 ORTHO05D004616 5.7e-47 193.7 167 66.5
BolC4t27032H Brassica oleracea HOM05D003848 ORTHO05D004616 5.7e-47 193.7 167 66.5
arahy.Tifrunner.gnm1.ann1.3GG3GM Arachis hypogaea HOM05D004461 ORTHO05D005543 9.7e-47 193.0 388 60.1
Ca_04836_v3 Cicer arietinum L. HOM05D001515 ORTHO05D004616 1.4e-45 189.1 136 72.8
C03p93140 Brassica napus HOM05D003848 ORTHO05D004616 1.6e-41 175.6 124 74.2
CDE07G1463 Ceratophyllum demersum HOM05D003848 ORTHO05D004616 1.6e-41 175.6 167 62.9
Nn4g26302 Nelumbo nucifera HOM05D003848 ORTHO05D004616 1.0e-40 172.9 101 86.1
Oeu017054.1 Olea europaea HOM05D004271 ORTHO05D006011 1.1e-39 169.5 142 69.0
SalBow4G2167 Salvia bowleyana HOM05D003848 ORTHO05D004616 1.5e-39 169.1 172 59.3
SGA_v2.0_scaffold138G35328 Striga asiatica HOM05D003848 ORTHO05D004616 1.3e-38 166.0 142 66.2
MCO02G035 Micromonas commoda HOM05D003848 ORTHO05D004616 3.7e-38 164.5 104 79.8
BcaC03g13677 Brassica carinata HOM05D003848 ORTHO05D004616 6.5e-35 153.7 116 72.4
PRCOL_00001828 Prasinoderma coloniale HOM05D003848 ORTHO05D004616 7.2e-34 150.2 105 70.5
BcaC03g16168 Brassica carinata HOM05D003848 ORTHO05D004616 8.8e-32 143.3 87 81.6
Cre01.g032250 Chlamydomonas reinhardtii HOM05D003848 ORTHO05D004616 4.4e-31 141.0 164 51.2
Hma1.2p1_0667F.1_g199770 Hydrangea macrophylla HOM05D003848 ORTHO05D004616 3.1e-29 134.8 74 91.9
Haze_27548 Corylus avellana HOM05D003848 ORTHO05D004616 4.5e-28 131.0 103 58.3
BraA09t40884Z Brassica rapa HOM05D003848 ORTHO05D004616 1.4e-24 119.4 68 86.8
Os09g0455400 Oryza sativa ssp. japonica HOM05D003848 ORTHO05D004616 4.0e-24 117.9 63 95.2
BraA09t38617Z Brassica rapa HOM05D003848 ORTHO05D004616 6.7e-24 117.1 68 85.3
FvH4_2g11951 Fragaria vesca HOM05D003848 ORTHO05D035678 4.4e-23 114.4 56 96.4
Oeu033495.1 Olea europaea HOM05D003848 ORTHO05D291898 2.2e-22 112.1 94 60.6
Actinidia21120 Actinidia chinensis HOM05D003848 ORTHO05D004616 3.1e-21 108.2 172 47.1
C02p39120 Brassica napus HOM05D003848 ORTHO05D004616 5.3e-21 107.5 69 76.8
BolC2t09922H Brassica oleracea HOM05D003848 ORTHO05D004616 1.6e-20 105.9 69 75.4
FAN24G2199 Fragaria x ananassa HOM05D003848 ORTHO05D035678 5.9e-20 104.0 52 94.2
MD07G1100600 Malus domestica HOM05D003848 ORTHO05D004616 1.1e-18 99.8 95 60.0
vmacro19512 Vaccinium macrocarpon HOM05D003848 ORTHO05D004616 4.7e-17 94.4 381 50.9
unitig_0.g1042 Utricularia gibba HOM05D003848 ORTHO05D004616 6.1e-17 94.0 56 85.7
BNapus_Darmor_BZH_scaffold_38p02440 Brassica napus HOM05D003848 ORTHO05D004616 1.2e-15 89.7 52 86.5
BNapus_Darmor_BZH_scaffold_38p02460 Brassica napus HOM05D003848 ORTHO05D004616 1.2e-15 89.7 52 86.5
Prupe.6G167600 Prunus persica HOM05D003848 ORTHO05D004616 4.4e-15 87.8 148 41.9
BolC2t06954H Brassica oleracea HOM05D003848 ORTHO05D004616 1.2e-12 79.7 52 80.8
Ca_05843_v3 Cicer arietinum L. HOM05D003848 ORTHO05D004616 1.0e-11 76.6 38 100.0
Lj1A173G45 Lonicera japonica HOM05D003848 ORTHO05D004616 2.8e-09 68.6 189 36.0
FAN09G4110 Fragaria x ananassa HOM05D000241 ORTHO05D000237 1.8e-08 65.9 34 88.2
C03p93060 Brassica napus HOM05D003848 ORTHO05D004616 3.4e-07 61.6 81 50.6
BraA09t40883Z Brassica rapa HOM05D003848 ORTHO05D004616 3.4e-07 61.6 90 46.7
BolC3t21614H Brassica oleracea HOM05D003848 ORTHO05D004616 4.4e-07 61.2 51 66.7
BcaC01g01557 Brassica carinata HOM05D003848 ORTHO05D004616 8.3e-06 57.0 59 55.9


User provided reference genes

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