Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.6e-92 342.8 181 100.0
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.3e-89 333.2 181 97.8
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.4e-88 329.7 181 97.2
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 9.4e-85 317.0 181 92.8
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 1.6e-84 316.2 181 94.5
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.6e-84 316.2 181 94.5
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 2.8e-81 305.4 181 91.2
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 2.6e-71 272.3 181 82.3
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 1.7e-65 253.1 182 76.9
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 3.8e-62 241.9 181 72.4
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 5.5e-61 238.0 184 72.8
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 8.0e-60 234.2 185 73.0
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 2.6e-58 229.2 179 72.6
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 2.6e-58 229.2 179 72.6
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.1e-56 223.8 157 80.9
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 1.4e-56 223.4 185 70.8
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 1.7e-54 216.5 184 65.2
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 5.0e-54 214.9 187 69.5
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 5.0e-54 214.9 184 66.8
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 6.5e-54 214.5 181 69.6
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 6.5e-54 214.5 182 67.6
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 7.2e-53 211.1 187 65.8
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 9.4e-53 210.7 186 66.1
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 1.2e-52 210.3 186 66.1
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 1.6e-52 209.9 187 64.7
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 1.6e-52 209.9 186 64.5
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 4.7e-52 208.4 190 63.7
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 6.1e-52 208.0 191 63.9
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 8.0e-52 207.6 192 66.1
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 2.3e-51 206.1 182 65.4
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 4.0e-51 205.3 190 64.7
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 4.0e-51 205.3 187 64.2
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 4.0e-51 205.3 179 65.4
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 5.2e-51 204.9 186 65.1
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 6.8e-51 204.5 185 65.4
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 1.5e-50 203.4 191 63.4
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 2.6e-50 202.6 184 65.2
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 3.4e-50 202.2 188 64.4
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 3.4e-50 202.2 177 66.1
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 4.4e-50 201.8 189 64.0
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 5.7e-50 201.4 182 62.6
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 7.5e-50 201.1 184 64.1
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 7.5e-50 201.1 185 63.8
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 9.8e-50 200.7 178 66.3
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 1.3e-49 200.3 184 64.1
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 1.3e-49 200.3 185 62.2
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 1.7e-49 199.9 184 64.1
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 1.7e-49 199.9 189 63.5
FAN24G1434 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.2e-49 199.5 159 69.2
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 2.2e-49 199.5 188 63.3
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 2.2e-49 199.5 186 62.4
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 2.8e-49 199.1 188 62.8
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 3.7e-49 198.7 184 63.6
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 6.3e-49 198.0 184 62.5
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 1.4e-48 196.8 182 63.7
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 1.4e-48 196.8 190 60.0
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 1.8e-48 196.4 183 63.4
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 3.1e-48 195.7 188 61.7
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 4.1e-48 195.3 186 61.8
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 4.1e-48 195.3 187 62.6
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 7.0e-48 194.5 181 62.4
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 7.0e-48 194.5 181 64.1
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 7.0e-48 194.5 186 61.8
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 9.1e-48 194.1 187 63.1
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 1.2e-47 193.7 193 62.2
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 1.6e-47 193.4 183 61.7
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 1.6e-47 193.4 183 61.7
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 2.7e-47 192.6 182 62.6
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 2.7e-47 192.6 182 61.0
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 2.7e-47 192.6 187 60.4
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 1.0e-46 190.7 182 62.6
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 1.7e-46 189.9 184 61.4
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 1.7e-46 189.9 184 61.4
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 2.3e-46 189.5 184 61.4
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 2.3e-46 189.5 191 58.1
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 2.3e-46 189.5 180 61.7
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 1.5e-45 186.8 182 61.5
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 2.5e-45 186.0 185 58.9
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 5.5e-45 184.9 191 59.7
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 9.5e-45 184.1 121 81.8
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 1.2e-44 183.7 181 59.1
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 2.1e-44 183.0 203 56.7
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 3.6e-44 182.2 184 58.2
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 8.0e-44 181.0 182 59.3
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 2.3e-43 179.5 185 57.8
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 1.2e-42 177.2 181 58.6
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 1.5e-42 176.8 181 58.6
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 2.0e-42 176.4 232 48.3
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 2.2e-41 172.9 181 56.9
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 8.3e-41 171.0 194 57.2
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 1.4e-40 170.2 174 58.6
Ciclev10003765m.g Citrus clementina HOM05D005654 ORTHO05D006438 2.7e-39 166.0 128 68.8
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 4.5e-39 165.2 192 55.2
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 1.3e-38 163.7 188 56.4
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 3.9e-38 162.2 182 53.8
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 3.9e-38 162.2 193 53.9
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 6.6e-38 161.4 187 57.8
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 1.9e-37 159.8 176 55.1
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 1.2e-36 157.1 123 66.7
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 4.7e-36 155.2 202 53.0
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 2.6e-34 149.4 186 53.2
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 5.8e-34 148.3 198 51.5
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 4.9e-33 145.2 185 53.0
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 1.1e-32 144.1 123 61.8
AUR62012893 Chenopodium quinoa HOM05D005654 ORTHO05D006438 4.1e-32 142.1 199 50.3
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 5.0e-30 135.2 184 51.1
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 8.6e-30 134.4 181 50.8
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 1.5e-29 133.7 96 79.2
Potri.007G018300 Populus trichocarpa HOM05D005654 ORTHO05D006438 1.9e-29 133.3 136 57.4
DCAR_025978 Daucus carota HOM05D005654 ORTHO05D006438 5.6e-29 131.7 182 50.5
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 6.2e-28 128.3 94 76.6
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 1.4e-27 127.1 254 42.5
Psat0s439g0080 Pisum sativum HOM05D005654 ORTHO05D006438 1.4e-27 127.1 125 58.4
Nn5g29728 Nelumbo nucifera HOM05D005654 ORTHO05D006438 2.3e-27 126.3 127 57.5
Psat2g190960 Pisum sativum HOM05D005654 ORTHO05D006438 2.3e-27 126.3 123 59.3
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 4.0e-27 125.6 130 55.4
Cpa.g.sc217.22 Carica papaya HOM05D005654 ORTHO05D006438 3.4e-26 122.5 160 48.8
Zm00001eb265250 Zea mays HOM05D005654 ORTHO05D006438 4.4e-26 122.1 124 57.3
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 2.2e-25 119.8 182 47.3
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 6.4e-25 118.2 89 74.2
Ah.08g209860 Amaranthus hybridus HOM05D005654 ORTHO05D006438 2.4e-24 116.3 193 45.1
Os05g0126200 Oryza sativa ssp. japonica HOM05D005654 ORTHO05D006438 9.2e-24 114.4 124 54.0
FAN15G1271 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.1e-20 103.2 64 95.3
unitig_747.g21954 Utricularia gibba HOM05D005654 ORTHO05D006438 8.9e-19 97.8 112 48.2
SHI03481 Sapria himalayana HOM05D005654 ORTHO05D006438 4.4e-18 95.5 106 54.7
SEGI_21166 Sequoiadendron giganteum HOM05D005654 ORTHO05D006438 2.9e-17 92.8 99 51.5
Zm00001eb414250 Zea mays HOM05D005654 ORTHO05D006438 4.9e-17 92.0 96 57.3
Zm00001eb355020 Zea mays HOM05D005654 ORTHO05D006438 6.6e-14 81.6 126 46.0
SHI05467 Sapria himalayana HOM05D005654 ORTHO05D006438 1.9e-13 80.1 66 63.6
Lalb_Chr02g0154671 Lupinus albus HOM05D005654 ORTHO05D006438 4.3e-13 79.0 88 47.7
FAN24G2610 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.1e-11 72.8 43 97.7
MBI01_g11791_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 3.1e-11 72.8 141 43.3
SHI06070 Sapria himalayana HOM05D005654 ORTHO05D006438 3.1e-11 72.8 85 50.6
CARHR160590 Cardamine hirsuta HOM05D005654 ORTHO05D006438 4.9e-09 65.5 94 43.6
Zm00001eb035810 Zea mays HOM05D005654 ORTHO05D006438 6.4e-09 65.1 75 52.0
Zm00001eb078300 Zea mays HOM05D000349 ORTHO05D010734 2.4e-08 63.2 81 49.4
Zm00001eb309330 Zea mays HOM05D000349 ORTHO05D006438 2.4e-08 63.2 81 49.4
SHI15307 Sapria himalayana HOM05D005654 ORTHO05D006438 1.6e-07 60.5 118 39.0
Mapoly0001s0539 Marchantia polymorpha HOM05D024399 ORTHO05D023494 2.7e-07 59.7 87 46.0
SHI10625 Sapria himalayana HOM05D020241 ORTHO05D006438 1.7e-06 57.0 60 53.3
Zm00001eb372850 Zea mays HOM05D005654 ORTHO05D006438 2.3e-06 56.6 56 62.5
SHI26700 Sapria himalayana HOM05D005654 ORTHO05D006438 6.6e-06 55.1 71 47.9


User provided reference genes

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