Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0070 Fragaria x ananassa HOM05D005211 ORTHO05D006148 9.6e-81 303.5 163 100.0
FAN07G0144 Fragaria x ananassa HOM05D005211 ORTHO05D006148 5.3e-79 297.7 163 97.5
FAN12G3367 Fragaria x ananassa HOM05D005211 ORTHO05D006148 4.9e-77 291.2 163 95.7
FAN12G0052 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.9e-76 289.3 162 95.1
RcHm_v2.0_Chr4g0409781 Rosa chinensis HOM05D005211 ORTHO05D006148 3.7e-64 248.4 162 83.3
FAN22G0040 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.2e-51 206.8 107 100.0
Prupe.1G178500 Prunus persica HOM05D005211 ORTHO05D006148 2.5e-36 156.0 168 57.1
QL10p044103 Quercus lobata HOM05D005211 ORTHO05D006148 6.1e-35 151.4 156 55.8
Sabra14G0113200 Salix brachista HOM05D005211 ORTHO05D006148 1.4e-31 140.2 151 58.9
CiPaw.01G108100 Carya illinoinensis HOM05D005211 ORTHO05D006148 2.4e-31 139.4 157 51.0
Potri.014G149800 Populus trichocarpa HOM05D005211 ORTHO05D006148 7.0e-31 137.9 161 55.3
Potri.002G232500 Populus trichocarpa HOM05D005211 ORTHO05D006148 1.2e-30 137.1 162 54.3
Sabra02G0177300 Salix brachista HOM05D005211 ORTHO05D006148 1.7e-29 133.3 153 58.2
Cfa008551 Carpinus fangiana HOM05D005211 ORTHO05D006148 2.3e-29 132.9 156 50.6
Haze_11077 Corylus avellana HOM05D005211 ORTHO05D006148 2.9e-29 132.5 138 53.6
Manes.11G114000 Manihot esculenta HOM05D005211 ORTHO05D006148 4.2e-28 128.6 145 52.4
Eucgr.H00442 Eucalyptus grandis HOM05D005211 ORTHO05D006148 1.2e-27 127.1 149 47.0
Nn1g08305 Nelumbo nucifera HOM05D005211 ORTHO05D006148 1.0e-26 124.0 143 50.3
MELO3C026134.2 Cucumis melo HOM05D005211 ORTHO05D006148 3.0e-26 122.5 147 47.6
CiPaw.02G059600 Carya illinoinensis HOM05D005211 ORTHO05D006148 4.0e-26 122.1 157 49.7
TAR365G0119 Trochodendron aralioides HOM05D005211 ORTHO05D006148 6.8e-26 121.3 137 50.4
MBI07_g35368_MAGBIO Magnolia biondii HOM05D005211 ORTHO05D006148 2.0e-25 119.8 139 54.0
CANSAT78G0009 Cannabis sativa HOM05D005211 ORTHO05D006148 2.6e-25 119.4 169 43.8
Sed0015684 Sechium edule HOM05D005211 ORTHO05D006148 2.6e-25 119.4 168 44.6
COL.COLO4_26568 Corchorus olitorius HOM05D005211 ORTHO05D006148 9.8e-25 117.5 153 45.8
TAR636G0814 Trochodendron aralioides HOM05D005211 ORTHO05D006148 1.7e-24 116.7 147 45.6
ClCG08G003780 Citrullus lanatus HOM05D005211 ORTHO05D006148 1.1e-23 114.0 155 46.5
TAR633G2277 Trochodendron aralioides HOM05D005211 ORTHO05D006148 1.1e-23 114.0 142 48.6
Oeu003658.1 Olea europaea HOM05D005211 ORTHO05D006148 1.4e-23 113.6 163 41.1
Aqoxy2G03955 Aquilegia oxysepala HOM05D005211 ORTHO05D006148 1.8e-23 113.2 147 47.6
TWI63G1319 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 5.4e-23 111.7 144 46.5
Cpa.g.sc8.70 Carica papaya HOM05D005211 ORTHO05D006148 7.0e-23 111.3 155 42.6
Gorai.001G228500 Gossypium raimondii HOM05D005211 ORTHO05D006148 7.0e-23 111.3 158 44.3
Gohir.A07G196700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 9.2e-23 110.9 158 43.7
Gohir.D07G203100 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.6e-22 110.2 158 43.7
Duzib133G1390 Durio zibethinus HOM05D005211 ORTHO05D006148 2.7e-22 109.4 165 45.5
QL93p0263_0042 Quercus lobata HOM05D005211 ORTHO05D006148 2.7e-22 109.4 158 44.9
Duzib138G1875 Durio zibethinus HOM05D005211 ORTHO05D006148 3.5e-22 109.0 163 44.8
Eucgr.H00724 Eucalyptus grandis HOM05D005211 ORTHO05D006148 7.8e-22 107.8 153 44.4
RcHm_v2.0_Chr6g0282781 Rosa chinensis HOM05D005211 ORTHO05D006148 7.8e-22 107.8 165 43.0
CiPaw.13G055500 Carya illinoinensis HOM05D005211 ORTHO05D006148 1.3e-21 107.1 148 45.3
Hma1.2p1_0412F.1_g147140 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 1.3e-21 107.1 113 53.1
Prupe.8G190100 Prunus persica HOM05D005211 ORTHO05D006148 3.9e-21 105.5 143 42.7
FAN27G1389 Fragaria x ananassa HOM05D005211 ORTHO05D006148 5.0e-21 105.1 154 42.2
EL10Ac5g10623 Beta vulgaris HOM05D005211 ORTHO05D006148 8.6e-21 104.4 158 41.8
Duzib211G0461 Durio zibethinus HOM05D005211 ORTHO05D006148 1.1e-20 104.0 169 40.2
Gohir.A11G142700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.5e-20 103.6 171 42.1
Cc01_g16110 Coffea canephora HOM05D005211 ORTHO05D006148 1.9e-20 103.2 146 43.8
FAN15G0641 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.9e-20 103.2 154 42.2
PGR142G0694 Punica granatum HOM05D005211 ORTHO05D006148 2.5e-20 102.8 169 43.2
CiPaw.14G044000 Carya illinoinensis HOM05D005211 ORTHO05D006148 4.3e-20 102.1 146 42.5
Lj1P101T27 Lonicera japonica HOM05D005211 ORTHO05D006148 5.6e-20 101.7 144 45.8
PGR083G0764 Punica granatum HOM05D005211 ORTHO05D006148 7.3e-20 101.3 157 43.9
CSS0012153 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 1.2e-19 100.5 141 44.7
CSS0028586 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 1.2e-19 100.5 141 44.7
MD05G1158800 Malus domestica HOM05D005211 ORTHO05D006148 2.1e-19 99.8 147 44.2
PGSC0003DMG400005560 Solanum tuberosum HOM05D005211 ORTHO05D006148 2.1e-19 99.8 147 44.9
Manes.13G054600 Manihot esculenta HOM05D005211 ORTHO05D006148 2.8e-19 99.4 162 38.9
MD05G1158700 Malus domestica HOM05D005211 ORTHO05D006148 3.6e-19 99.0 149 43.0
RcHm_v2.0_Chr6g0282791 Rosa chinensis HOM05D005211 ORTHO05D006148 3.6e-19 99.0 153 43.1
Actinidia23357 Actinidia chinensis HOM05D005211 ORTHO05D006148 8.0e-19 97.8 136 43.4
Oeu057829.1 Olea europaea HOM05D005211 ORTHO05D006148 8.0e-19 97.8 146 38.4
CDE07G0882 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 1.0e-18 97.4 153 42.5
CsaV3_6G003020 Cucumis sativus L. HOM05D005211 ORTHO05D006148 1.0e-18 97.4 107 51.4
FAN24G0649 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.4e-18 97.1 157 42.7
FvH4_2g17750 Fragaria vesca HOM05D005211 ORTHO05D006148 1.8e-18 96.7 151 40.4
FAN24G3081 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.8e-18 96.7 151 40.4
QL09p046680 Quercus lobata HOM05D005211 ORTHO05D006148 1.8e-18 96.7 150 44.0
MD10G1151700 Malus domestica HOM05D005211 ORTHO05D006148 2.3e-18 96.3 146 41.8
PSO675G5714 Papaver somniferum HOM05D005211 ORTHO05D006148 2.3e-18 96.3 174 42.0
TWI18G0981 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 2.3e-18 96.3 148 39.9
Gohir.D11G149000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 3.1e-18 95.9 170 38.8
Gorai.007G159800 Gossypium raimondii HOM05D005211 ORTHO05D006148 3.1e-18 95.9 171 39.2
CARHR138130 Cardamine hirsuta HOM05D005211 ORTHO05D006148 6.8e-18 94.7 147 42.9
FAN27G2625 Fragaria x ananassa HOM05D005211 ORTHO05D006148 6.8e-18 94.7 157 41.4
Sc17g0001650 Simmondsia chinensis HOM05D005211 ORTHO05D006148 6.8e-18 94.7 144 43.8
Lj2P1117T13 Lonicera japonica HOM05D005211 ORTHO05D006148 1.5e-17 93.6 147 38.8
Thecc.01G210700 Theobroma cacao HOM05D005211 ORTHO05D006148 1.5e-17 93.6 156 42.3
BNapus_Darmor_BZH_scaffold_64p00090 Brassica napus HOM05D005211 ORTHO05D006148 2.0e-17 93.2 142 43.0
BraA04t18707Z Brassica rapa HOM05D005211 ORTHO05D006148 2.0e-17 93.2 142 43.0
Manes.12G059000 Manihot esculenta HOM05D005211 ORTHO05D006148 2.0e-17 93.2 119 47.9
Oeu013415.1 Olea europaea HOM05D005211 ORTHO05D006148 2.0e-17 93.2 154 40.9
ATR0686G247 Amborella trichopoda HOM05D005211 ORTHO05D006148 2.6e-17 92.8 139 41.7
Dinv28809 Davidia involucrata HOM05D005211 ORTHO05D006148 2.6e-17 92.8 152 40.1
CDE04G3135 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 3.4e-17 92.4 153 41.2
TWI36G1602 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 3.4e-17 92.4 146 40.4
BcaNung03535 Brassica carinata HOM05D005211 ORTHO05D006148 5.8e-17 91.7 142 42.3
AL4G41710 Arabidopsis lyrata HOM05D005211 ORTHO05D006148 9.8e-17 90.9 145 42.8
CDE02G4090 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 9.8e-17 90.9 146 43.2
Sp4g25190 Schrenkiella parvula HOM05D005211 ORTHO05D006148 9.8e-17 90.9 143 42.7
THA.LOC104802290 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 1.7e-16 90.1 144 45.1
Migut.N00665 Erythranthe guttata HOM05D005211 ORTHO05D006148 2.2e-16 89.7 144 43.1
Lsat_1_v5_gn_5_178301 Lactuca sativa HOM05D005211 ORTHO05D006148 2.2e-16 89.7 176 36.4
CDE09G1368 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 4.9e-16 88.6 137 47.4
vmacro02818 Vaccinium macrocarpon HOM05D005211 ORTHO05D006148 4.9e-16 88.6 148 40.5
Aa31LG1G24830 Aethionema arabicum HOM05D005211 ORTHO05D006148 6.4e-16 88.2 141 43.3
AT2G43060 Arabidopsis thaliana HOM05D005211 ORTHO05D006148 6.4e-16 88.2 142 42.3
Prupe.8G190000 Prunus persica HOM05D005211 ORTHO05D006148 6.4e-16 88.2 139 42.4
MD10G1151600 Malus domestica HOM05D005211 ORTHO05D006148 8.3e-16 87.8 160 38.1
Migut.D00738 Erythranthe guttata HOM05D005211 ORTHO05D006148 1.1e-15 87.4 160 38.8
CANSAT01G0934 Cannabis sativa HOM05D005211 ORTHO05D006148 1.4e-15 87.0 160 40.0
FvH4_2g17760 Fragaria vesca HOM05D005211 ORTHO05D006148 1.9e-15 86.7 148 41.2
BcaB06g29284 Brassica carinata HOM05D005211 ORTHO05D006148 2.4e-15 86.3 145 41.4
BcaB06g29285 Brassica carinata HOM05D005211 ORTHO05D006148 2.4e-15 86.3 145 41.4
SGA_v2.0_scaffold77G25295 Striga asiatica HOM05D005211 ORTHO05D006148 9.2e-15 84.3 141 40.4
Carub.0004s2554 Capsella rubella HOM05D005211 ORTHO05D006148 1.2e-14 84.0 143 42.0
Oeu049588.1 Olea europaea HOM05D005211 ORTHO05D006148 1.2e-14 84.0 99 45.5
HPP92_023344 Vanilla planifolia HOM05D005211 ORTHO05D006148 1.2e-14 84.0 140 39.3
A05p03550 Brassica napus HOM05D005211 ORTHO05D006148 2.0e-14 83.2 141 39.7
BraA05t19341Z Brassica rapa HOM05D005211 ORTHO05D006148 2.0e-14 83.2 141 39.7
Thhalv10017615m.g Eutrema salsugineum HOM05D005211 ORTHO05D006148 2.0e-14 83.2 142 43.0
THA.LOC104803428 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 2.0e-14 83.2 150 39.3
AUR62028696 Chenopodium quinoa HOM05D005211 ORTHO05D006148 2.7e-14 82.8 145 40.7
Ciclev10016996m.g Citrus clementina HOM05D005211 ORTHO05D006148 3.5e-14 82.4 154 37.7
DCAR_004769 Daucus carota HOM05D005211 ORTHO05D006148 6.0e-14 81.6 156 39.1
BcaC02g12418 Brassica carinata HOM05D005211 ORTHO05D006148 3.0e-13 79.3 141 38.3
BolC4t22051H Brassica oleracea HOM05D005211 ORTHO05D006148 3.0e-13 79.3 141 38.3
Solyc12g042010.1 Solanum lycopersicum HOM05D005211 ORTHO05D006148 8.6e-13 77.8 145 39.3
C04p04120 Brassica napus HOM05D005211 ORTHO05D006148 1.1e-12 77.4 142 40.1
Peaxi162Scf00335g00067 Petunia axillaris HOM05D005211 ORTHO05D006148 1.5e-12 77.0 100 46.0
Rhsim13G0052900 Rhododendron simsii HOM05D005211 ORTHO05D006148 1.5e-12 77.0 126 38.9
unitig_0.g414 Utricularia gibba HOM05D005211 ORTHO05D006148 1.5e-12 77.0 139 36.0
Hma1.2p1_0959F.1_g241620 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 4.3e-12 75.5 113 39.8
unitig_52.g17443 Utricularia gibba HOM05D005211 ORTHO05D006148 1.2e-11 73.9 141 38.3
C04p70060 Brassica napus HOM05D005211 ORTHO05D006148 1.6e-11 73.6 140 37.9
BolC4t28506H Brassica oleracea HOM05D005211 ORTHO05D006148 1.6e-11 73.6 140 37.9
Os04g0660100 Oryza sativa ssp. japonica HOM05D005211 ORTHO05D006148 1.6e-11 73.6 165 35.2
Actinidia30014 Actinidia chinensis HOM05D005211 ORTHO05D006148 2.1e-11 73.2 98 45.9
Gohir.D07G167400 Gossypium hirsutum HOM05D005211 ORTHO05D006148 8.0e-11 71.2 109 43.1
Sopen09g012960 Solanum pennellii HOM05D005211 ORTHO05D006148 5.2e-10 68.6 110 41.8
ECA247G2119 Erigeron canadensis HOM05D005211 ORTHO05D006148 6.8e-10 68.2 117 38.5
FAN15G2376 Fragaria x ananassa HOM05D005211 ORTHO05D006148 8.9e-10 67.8 103 42.7
Ah.11g050990 Amaranthus hybridus HOM05D005211 ORTHO05D006148 2.0e-09 66.6 119 35.3
MSTRG.18497 Avicennia marina HOM05D005211 ORTHO05D006148 2.0e-09 66.6 136 38.2
Nitab4.5_0004516g0010 Nicotiana tabacum HOM05D005211 ORTHO05D006148 2.6e-09 66.2 87 48.3
Gohir.A07G159000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 5.8e-09 65.1 132 37.9
HanXRQChr01g0007251 Helianthus annuus HOM05D005211 ORTHO05D006148 5.8e-09 65.1 151 33.8
Nn3g21745 Nelumbo nucifera HOM05D001624 ORTHO05D001530 7.5e-09 64.7 155 34.2
Dinv10443 Davidia involucrata HOM05D005211 ORTHO05D006148 9.8e-09 64.3 162 32.1
Atru.chr6.3543 Acer truncatum HOM05D005211 ORTHO05D006148 1.3e-08 63.9 153 34.0
Gorai.N002800 Gossypium raimondii HOM05D005211 ORTHO05D006148 1.7e-08 63.5 138 38.4
SEGI_10087 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 1.9e-07 60.1 196 29.6
SEGI_03314 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 3.2e-07 59.3 179 31.3
QL10p006175 Quercus lobata HOM05D000022 ORTHO05D006148 4.1e-07 58.9 128 37.5
Zm00001eb432720 Zea mays HOM05D005211 ORTHO05D006148 4.1e-07 58.9 162 31.5
Dinv44235 Davidia involucrata HOM05D005211 ORTHO05D006148 5.4e-07 58.5 68 54.4
HPP92_001231 Vanilla planifolia HOM05D001624 ORTHO05D001530 5.4e-07 58.5 136 32.4
Potri.005G012400 Populus trichocarpa HOM05D001624 ORTHO05D001530 7.1e-07 58.2 122 35.2
CSS0032639 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 9.2e-07 57.8 95 37.9
PSO782G5068 Papaver somniferum HOM05D001624 ORTHO05D001530 9.2e-07 57.8 144 34.0
PSO478G0983 Papaver somniferum HOM05D001624 ORTHO05D001530 1.6e-06 57.0 144 34.0
CiPaw.07G030500 Carya illinoinensis HOM05D001624 ORTHO05D001530 2.1e-06 56.6 146 31.5
CDE02G1081 Ceratophyllum demersum HOM05D001624 ORTHO05D001530 2.1e-06 56.6 143 35.0
Sabra05G0020200 Salix brachista HOM05D001624 ORTHO05D001530 2.1e-06 56.6 121 33.1
DCAR_026988 Daucus carota HOM05D001624 ORTHO05D001530 2.7e-06 56.2 144 36.1
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 2.7e-06 56.2 151 31.8
Thecc.05G324400 Theobroma cacao HOM05D001624 ORTHO05D001530 3.5e-06 55.8 142 31.7
TAR633G2530 Trochodendron aralioides HOM05D001624 ORTHO05D001530 4.6e-06 55.5 150 32.7
Actinidia16869 Actinidia chinensis HOM05D001624 ORTHO05D001530 6.0e-06 55.1 133 33.1
TAR636G0825 Trochodendron aralioides HOM05D001624 ORTHO05D001530 6.0e-06 55.1 151 31.1
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 7.8e-06 54.7 186 31.7
FAN02G2427 Fragaria x ananassa HOM05D001624 ORTHO05D001530 7.8e-06 54.7 143 31.5
TAR365G0349 Trochodendron aralioides HOM05D001624 ORTHO05D001530 7.8e-06 54.7 150 30.0


User provided reference genes

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