Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0051 Fragaria x ananassa HOM05D002318 ORTHO05D008744 5.8e-189 664.1 334 100.0
FAN07G2980 Fragaria x ananassa HOM05D002318 ORTHO05D004713 1.0e-185 653.3 334 98.5
FAN17G2010 Fragaria x ananassa HOM05D002318 ORTHO05D008744 3.3e-184 648.3 345 95.7
RcHm_v2.0_Chr4g0438871 Rosa chinensis HOM05D002318 ORTHO05D008744 5.6e-176 620.9 334 93.4
FAN12G0082 Fragaria x ananassa HOM05D002318 ORTHO05D008744 2.8e-175 618.6 334 94.9
MD16G1064900 Malus domestica HOM05D002318 ORTHO05D008744 6.4e-148 527.7 334 79.6
FvH4_4g30500 Fragaria vesca HOM05D002318 ORTHO05D008744 3.3e-144 515.4 271 97.4
QL03p070830 Quercus lobata HOM05D002318 ORTHO05D008744 2.2e-140 502.7 338 76.0
Haze_11934 Corylus avellana HOM05D002318 ORTHO05D008744 2.9e-140 502.3 339 76.4
Cfa008908 Carpinus fangiana HOM05D002318 ORTHO05D008744 6.5e-140 501.1 339 75.8
CiPaw.05G128000 Carya illinoinensis HOM05D002318 ORTHO05D008744 7.9e-138 494.2 338 75.7
Thecc.02G336500 Theobroma cacao HOM05D002318 ORTHO05D008744 3.4e-133 478.8 330 74.8
Atru.chr11.1690 Acer truncatum HOM05D002318 ORTHO05D008744 7.6e-133 477.6 333 73.9
TAR622G0636 Trochodendron aralioides HOM05D002318 ORTHO05D004713 8.4e-132 474.2 331 73.4
Potri.010G161600 Populus trichocarpa HOM05D002318 ORTHO05D008744 1.9e-131 473.0 340 72.1
TWI75G0802 Tripterygium wilfordii HOM05D002318 ORTHO05D008744 1.2e-130 470.3 342 70.8
Sabra10G0122900 Salix brachista HOM05D002318 ORTHO05D008744 3.5e-130 468.8 340 71.5
GSVIVG01012177001 Vitis vinifera HOM05D002318 ORTHO05D008744 1.8e-129 466.5 341 72.1
COL.COLO4_27936 Corchorus olitorius HOM05D002318 ORTHO05D008744 8.7e-129 464.2 333 73.9
Phvul.002G069400 Phaseolus vulgaris HOM05D002318 ORTHO05D008744 2.2e-127 459.5 328 71.3
Glyma.02G113500 Glycine max HOM05D002318 ORTHO05D008744 1.1e-126 457.2 328 72.6
Nitab4.5_0000334g0260 Nicotiana tabacum HOM05D002318 ORTHO05D008744 1.8e-126 456.4 335 69.9
VMungo1215G2584 Vigna mungo HOM05D002318 ORTHO05D008744 1.8e-126 456.4 329 70.8
Lalb_Chr17g0340981 Lupinus albus HOM05D002318 ORTHO05D008744 5.3e-126 454.9 334 71.0
Prupe.1G282000 Prunus persica HOM05D002318 ORTHO05D008744 1.2e-125 453.8 339 72.0
Gorai.013G091200 Gossypium raimondii HOM05D002318 ORTHO05D008744 1.5e-125 453.4 339 69.3
Cpa.g.sc1.87 Carica papaya HOM05D002318 ORTHO05D008744 5.9e-125 451.4 338 72.8
Sopen05g007450 Solanum pennellii HOM05D002318 ORTHO05D008744 7.7e-125 451.1 329 69.0
Duzib268G0798 Durio zibethinus HOM05D002318 ORTHO05D008744 1.0e-124 450.7 331 70.4
PGSC0003DMG401028329 Solanum tuberosum HOM05D002318 ORTHO05D008744 1.7e-124 449.9 329 69.3
PGSC0003DMG402022110 Solanum tuberosum HOM05D002318 ORTHO05D008744 1.7e-124 449.9 329 69.3
Ciclev10032054m.g Citrus clementina HOM05D002318 ORTHO05D008744 2.9e-124 449.1 329 71.1
PGR119G0925 Punica granatum HOM05D002318 ORTHO05D008744 1.4e-123 446.8 336 68.5
TPR.G22412 Trifolium pratense HOM05D002318 ORTHO05D008744 1.4e-123 446.8 340 69.4
Gohir.A13G079900 Gossypium hirsutum HOM05D002318 ORTHO05D008744 2.5e-123 446.0 338 68.6
THA.LOC104805183 Tarenaya hassleriana HOM05D002318 ORTHO05D008744 4.2e-123 445.3 331 70.7
CANSAT54G0184 Cannabis sativa HOM05D002318 ORTHO05D008744 5.5e-123 444.9 345 70.1
Aqoxy3G03551 Aquilegia oxysepala HOM05D002318 ORTHO05D008744 9.4e-123 444.1 330 68.8
CAN.G1340.13 Capsicum annuum HOM05D002318 ORTHO05D008744 1.2e-122 443.7 329 67.8
Sc11g0002270 Simmondsia chinensis HOM05D002318 ORTHO05D008744 1.2e-122 443.7 335 66.3
Cc11_g12380 Coffea canephora HOM05D002318 ORTHO05D008744 1.6e-122 443.4 336 67.0
Lj2g0021077 Lotus japonicus HOM05D002318 ORTHO05D008744 1.6e-122 443.4 329 68.1
Ca_04907_v3 Cicer arietinum L. HOM05D002318 ORTHO05D008744 5.1e-121 438.3 332 67.5
Psat2g128360 Pisum sativum HOM05D002318 ORTHO05D008744 5.1e-121 438.3 332 69.9
Eucgr.G02464 Eucalyptus grandis HOM05D002318 ORTHO05D008744 2.0e-120 436.4 330 68.5
arahy.Tifrunner.gnm1.ann1.T0481B Arachis hypogaea HOM05D002318 ORTHO05D008744 7.4e-120 434.5 332 69.3
arahy.Tifrunner.gnm1.ann1.T5ZGHX Arachis hypogaea HOM05D002318 ORTHO05D008744 1.7e-119 433.3 327 69.7
CsaV3_6G032440 Cucumis sativus L. HOM05D002318 ORTHO05D008744 1.7e-119 433.3 335 66.3
MBI16_g06774_MAGBIO Magnolia biondii HOM05D002318 ORTHO05D008744 3.7e-119 432.2 335 68.4
Lsat_1_v5_gn_8_48101 Lactuca sativa HOM05D002318 ORTHO05D004713 6.3e-119 431.4 332 66.0
Thhalv10004578m.g Eutrema salsugineum HOM05D002318 ORTHO05D008744 1.4e-118 430.3 332 67.8
MELO3C011434.2 Cucumis melo HOM05D002318 ORTHO05D008744 1.8e-118 429.9 337 66.2
Oeu021096.1 Olea europaea HOM05D002318 ORTHO05D008744 2.0e-117 426.4 340 65.6
Peaxi162Scf00314g00023 Petunia axillaris HOM05D002318 ORTHO05D008744 2.0e-117 426.4 369 61.8
ATR0111G011 Amborella trichopoda HOM05D002318 ORTHO05D008744 5.9e-117 424.9 291 75.6
AL5G13100 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 3.8e-116 422.2 338 66.9
AL5G13140 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 3.8e-116 422.2 338 66.9
HanXRQChr12g0362851 Helianthus annuus HOM05D002318 ORTHO05D008744 3.8e-116 422.2 337 64.1
BcaC06g34000 Brassica carinata HOM05D002318 ORTHO05D008744 6.5e-116 421.4 332 67.5
Carub.0005s0236 Capsella rubella HOM05D002318 ORTHO05D008744 1.9e-115 419.9 331 67.4
CARHR145730 Cardamine hirsuta HOM05D002318 ORTHO05D008744 2.5e-115 419.5 334 68.0
AT2G03390 Arabidopsis thaliana HOM05D002318 ORTHO05D008744 4.2e-115 418.7 337 67.4
Solyc05g012620.4 Solanum lycopersicum HOM05D002318 ORTHO05D008744 4.2e-115 418.7 269 75.5
Sp2g14310 Schrenkiella parvula HOM05D002318 ORTHO05D008744 5.5e-115 418.3 334 67.1
Actinidia19922 Actinidia chinensis HOM05D002318 ORTHO05D008744 9.4e-115 417.5 334 65.6
Gohir.D13G079700 Gossypium hirsutum HOM05D002318 ORTHO05D008744 1.2e-114 417.2 339 65.5
BraA06t27203Z Brassica rapa HOM05D002318 ORTHO05D008744 4.7e-114 415.2 334 67.7
C07p33850 Brassica napus HOM05D002318 ORTHO05D008744 1.8e-113 413.3 334 67.1
BolC7t43899H Brassica oleracea HOM05D002318 ORTHO05D008744 3.9e-113 412.1 334 67.1
BcaC06g31184 Brassica carinata HOM05D002318 ORTHO05D008744 6.7e-113 411.4 337 67.1
Aa31LG2G7170 Aethionema arabicum HOM05D002318 ORTHO05D008744 3.3e-112 409.1 345 65.8
Hund05860 Selenicereus undatus HOM05D002318 ORTHO05D008744 3.3e-112 409.1 309 67.3
CSS0013540 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 4.8e-111 405.2 263 77.9
AUR62043182 Chenopodium quinoa HOM05D002318 ORTHO05D008744 8.2e-111 404.4 341 63.3
Rhsim12G0076700 Rhododendron simsii HOM05D002318 ORTHO05D008744 1.1e-110 404.1 345 62.6
Migut.L01223 Erythranthe guttata HOM05D002318 ORTHO05D008744 4.1e-110 402.1 341 61.9
Ah.13g073950 Amaranthus hybridus HOM05D002318 ORTHO05D008744 1.6e-109 400.2 357 59.4
vmacro01330 Vaccinium macrocarpon HOM05D002318 ORTHO05D008744 4.5e-109 398.7 367 58.0
ClCG08G010240 Citrullus lanatus HOM05D002318 ORTHO05D008744 1.0e-108 397.5 380 58.7
DCAR_027449 Daucus carota HOM05D002318 ORTHO05D008744 1.0e-108 397.5 276 72.5
Manes.01G030400 Manihot esculenta HOM05D002318 ORTHO05D008744 1.1e-107 394.0 287 73.2
Medtr5g043480 Medicago truncatula HOM05D002318 ORTHO05D008744 3.6e-106 389.0 336 62.8
ECA233G4874 Erigeron canadensis HOM05D002318 ORTHO05D008744 3.0e-105 386.0 317 65.3
CDE04G0061 Ceratophyllum demersum HOM05D002318 ORTHO05D008744 5.2e-105 385.2 308 65.6
EL10As3g23350 Beta vulgaris HOM05D002318 ORTHO05D008744 8.8e-105 384.4 368 56.2
Hma1.2p1_0354F.1_g133650 Hydrangea macrophylla HOM05D002318 ORTHO05D008744 2.4e-102 376.3 286 67.5
AUR62038089 Chenopodium quinoa HOM05D002318 ORTHO05D008744 8.5e-100 367.9 341 59.5
Dinv34114 Davidia involucrata HOM05D002318 ORTHO05D008744 2.5e-99 366.3 273 70.7
Os08g0172200 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 2.1e-98 363.2 324 59.3
SalBow2G2755 Salvia bowleyana HOM05D002318 ORTHO05D008744 1.8e-97 360.1 341 56.3
SEGI_16280 Sequoiadendron giganteum HOM05D002318 ORTHO05D008744 8.8e-97 357.8 276 63.8
Lj6C782T15 Lonicera japonica HOM05D002318 ORTHO05D008744 1.2e-93 347.4 337 56.4
Nn3g17371 Nelumbo nucifera HOM05D002318 ORTHO05D008744 1.6e-93 347.1 287 64.5
A06p43150 Brassica napus HOM05D002318 ORTHO05D008744 3.6e-90 335.9 290 66.6
unitig_22.g6902 Utricularia gibba HOM05D002318 ORTHO05D008744 6.1e-90 335.1 287 62.0
Sed0004708 Sechium edule HOM05D002318 ORTHO05D008744 6.3e-87 325.1 271 64.2
Mapoly0001s0530 Marchantia polymorpha HOM05D002318 ORTHO05D008744 1.3e-84 317.4 247 62.8
SGA_v2.0_scaffold16G07752 Striga asiatica HOM05D002318 ORTHO05D008744 3.4e-80 302.8 270 58.1
Pp3c7_3960 Physcomitrium patens HOM05D002318 ORTHO05D008744 5.7e-80 302.0 253 58.5
FAN16G1553 Fragaria x ananassa HOM05D002318 ORTHO05D008744 4.6e-77 292.4 157 97.5
AagrBONN_evm.TU.Sc2ySwM_117.1985 Anthoceros agrestis HOM05D002318 ORTHO05D008744 1.2e-74 284.3 262 54.6
Actinidia31948 Actinidia chinensis HOM05D002318 ORTHO05D008744 1.2e-72 277.7 283 55.1
PSO591G0040 Papaver somniferum HOM05D002318 ORTHO05D008744 9.8e-72 274.6 262 58.8
Dinv16705 Davidia involucrata HOM05D002318 ORTHO05D004713 2.0e-69 266.9 222 68.0
CBR_g27967 Chara braunii HOM05D002318 ORTHO05D008744 6.2e-66 255.4 257 51.0
arahy.Tifrunner.gnm1.ann1.TF58FW Arachis hypogaea HOM05D002318 ORTHO05D008744 1.2e-61 241.1 222 64.0
arahy.Tifrunner.gnm1.ann1.1U2S5X Arachis hypogaea HOM05D002318 ORTHO05D008744 7.8e-61 238.4 222 63.5
SMO115G0105 Selaginella moellendorffii HOM05D002318 ORTHO05D008744 1.7e-60 237.3 212 55.7
CSS0007300 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 1.5e-59 234.2 220 61.4
Glyma.01G055000 Glycine max HOM05D002318 ORTHO05D008744 1.4e-57 227.6 179 70.4
CSS0032009 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 5.2e-49 199.1 238 50.4
Zm00001eb370310 Zea mays HOM05D002318 ORTHO05D008744 1.7e-47 194.1 179 60.9
PRCOL_00000845 Prasinoderma coloniale HOM05D002318 ORTHO05D008744 1.8e-41 174.1 259 37.5
Aa31sc734G30 Aethionema arabicum HOM05D002318 ORTHO05D008744 3.1e-41 173.3 199 58.8
Cre02.g113700 Chlamydomonas reinhardtii HOM05D002318 ORTHO05D008744 6.9e-41 172.2 275 37.8
Glyma.01G054950 Glycine max HOM05D002318 ORTHO05D008744 2.5e-22 110.5 89 65.2
CBR_g50304 Chara braunii HOM05D020303 ORTHO05D021299 4.8e-18 96.3 157 35.7
MD13G1066100 Malus domestica HOM05D002318 ORTHO05D008744 8.5e-15 85.5 76 57.9
Os01g0764500 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 1.2e-13 81.6 60 61.7
arahy.Tifrunner.gnm1.ann1.QV9UMR Arachis hypogaea HOM05D000001 ORTHO05D000003 5.7e-11 72.8 37 83.8
Lsat_1_v5_gn_5_151580 Lactuca sativa HOM05D002318 ORTHO05D008744 1.3e-07 61.6 56 62.5
Cfa025736 Carpinus fangiana HOM05D020303 ORTHO05D021299 8.5e-07 58.9 108 34.3


User provided reference genes

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