Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0040 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.1e-51 206.5 107 100.0
FAN22G0070 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.1e-51 206.5 107 100.0
FAN07G0144 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.3e-51 205.3 107 99.1
FAN12G0052 Fragaria x ananassa HOM05D005211 ORTHO05D006148 4.4e-50 201.1 106 97.2
FAN12G3367 Fragaria x ananassa HOM05D005211 ORTHO05D006148 4.4e-50 201.1 107 97.2
RcHm_v2.0_Chr4g0409781 Rosa chinensis HOM05D005211 ORTHO05D006148 6.8e-43 177.2 107 87.9
Prupe.1G178500 Prunus persica HOM05D005211 ORTHO05D006148 4.3e-29 131.3 110 67.3
QL10p044103 Quercus lobata HOM05D005211 ORTHO05D006148 5.4e-24 114.4 106 56.6
Haze_11077 Corylus avellana HOM05D005211 ORTHO05D006148 1.2e-23 113.2 114 55.3
Potri.014G149800 Populus trichocarpa HOM05D005211 ORTHO05D006148 1.6e-23 112.8 114 58.8
CiPaw.01G108100 Carya illinoinensis HOM05D005211 ORTHO05D006148 2.1e-23 112.5 107 55.1
Sabra14G0113200 Salix brachista HOM05D005211 ORTHO05D006148 3.5e-23 111.7 106 62.3
Sabra02G0177300 Salix brachista HOM05D005211 ORTHO05D006148 1.0e-22 110.2 110 61.8
Potri.002G232500 Populus trichocarpa HOM05D005211 ORTHO05D006148 1.8e-22 109.4 105 60.0
Cfa008551 Carpinus fangiana HOM05D005211 ORTHO05D006148 3.3e-21 105.1 107 53.3
Eucgr.H00442 Eucalyptus grandis HOM05D005211 ORTHO05D006148 3.3e-21 105.1 105 50.5
Manes.11G114000 Manihot esculenta HOM05D005211 ORTHO05D006148 2.1e-20 102.4 107 51.4
CANSAT78G0009 Cannabis sativa HOM05D005211 ORTHO05D006148 2.8e-20 102.1 117 48.7
MELO3C026134.2 Cucumis melo HOM05D005211 ORTHO05D006148 4.8e-20 101.3 102 52.9
Oeu003658.1 Olea europaea HOM05D005211 ORTHO05D006148 6.2e-20 100.9 107 49.5
Hma1.2p1_0412F.1_g147140 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 8.1e-20 100.5 107 53.3
CiPaw.02G059600 Carya illinoinensis HOM05D005211 ORTHO05D006148 1.1e-19 100.1 108 56.5
TWI63G1319 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 1.8e-19 99.4 105 50.5
Sed0015684 Sechium edule HOM05D005211 ORTHO05D006148 5.3e-19 97.8 106 50.0
TAR633G2277 Trochodendron aralioides HOM05D005211 ORTHO05D006148 5.3e-19 97.8 108 49.1
Aqoxy2G03955 Aquilegia oxysepala HOM05D005211 ORTHO05D006148 6.9e-19 97.4 108 49.1
CsaV3_6G003020 Cucumis sativus L. HOM05D005211 ORTHO05D006148 6.9e-19 97.4 107 51.4
Nn1g08305 Nelumbo nucifera HOM05D005211 ORTHO05D006148 9.0e-19 97.1 105 50.5
ClCG08G003780 Citrullus lanatus HOM05D005211 ORTHO05D006148 2.0e-18 95.9 103 53.4
MBI07_g35368_MAGBIO Magnolia biondii HOM05D005211 ORTHO05D006148 2.6e-18 95.5 104 52.9
TAR636G0814 Trochodendron aralioides HOM05D005211 ORTHO05D006148 1.3e-17 93.2 102 50.0
TAR365G0119 Trochodendron aralioides HOM05D005211 ORTHO05D006148 3.8e-17 91.7 102 49.0
Cpa.g.sc8.70 Carica papaya HOM05D005211 ORTHO05D006148 4.9e-17 91.3 114 44.7
MD05G1158800 Malus domestica HOM05D005211 ORTHO05D006148 2.4e-16 89.0 101 50.5
RcHm_v2.0_Chr6g0282781 Rosa chinensis HOM05D005211 ORTHO05D006148 2.4e-16 89.0 108 49.1
Manes.12G059000 Manihot esculenta HOM05D005211 ORTHO05D006148 4.2e-16 88.2 116 47.4
Manes.13G054600 Manihot esculenta HOM05D005211 ORTHO05D006148 5.5e-16 87.8 116 44.0
RcHm_v2.0_Chr6g0282791 Rosa chinensis HOM05D005211 ORTHO05D006148 9.3e-16 87.0 113 47.8
Cc01_g16110 Coffea canephora HOM05D005211 ORTHO05D006148 2.1e-15 85.9 102 49.0
Eucgr.H00724 Eucalyptus grandis HOM05D005211 ORTHO05D006148 2.1e-15 85.9 113 46.0
COL.COLO4_26568 Corchorus olitorius HOM05D005211 ORTHO05D006148 2.7e-15 85.5 108 46.3
Oeu057829.1 Olea europaea HOM05D005211 ORTHO05D006148 2.7e-15 85.5 107 41.1
CiPaw.14G044000 Carya illinoinensis HOM05D005211 ORTHO05D006148 4.6e-15 84.7 107 44.9
QL93p0263_0042 Quercus lobata HOM05D005211 ORTHO05D006148 4.6e-15 84.7 109 47.7
Lj2P1117T13 Lonicera japonica HOM05D005211 ORTHO05D006148 6.0e-15 84.3 107 43.9
PGR142G0694 Punica granatum HOM05D005211 ORTHO05D006148 6.0e-15 84.3 119 44.5
FAN24G0649 Fragaria x ananassa HOM05D005211 ORTHO05D006148 7.9e-15 84.0 117 46.2
Oeu049588.1 Olea europaea HOM05D005211 ORTHO05D006148 7.9e-15 84.0 99 45.5
PGSC0003DMG400005560 Solanum tuberosum HOM05D005211 ORTHO05D006148 7.9e-15 84.0 104 51.0
EL10Ac5g10623 Beta vulgaris HOM05D005211 ORTHO05D006148 1.0e-14 83.6 106 47.2
Gorai.001G228500 Gossypium raimondii HOM05D005211 ORTHO05D006148 1.0e-14 83.6 112 44.6
MD10G1151700 Malus domestica HOM05D005211 ORTHO05D006148 1.0e-14 83.6 101 48.5
ATR0686G247 Amborella trichopoda HOM05D005211 ORTHO05D006148 1.3e-14 83.2 104 44.2
Duzib138G1875 Durio zibethinus HOM05D005211 ORTHO05D006148 1.3e-14 83.2 118 45.8
Gohir.A07G196700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.8e-14 82.8 113 43.4
Gohir.D07G203100 Gossypium hirsutum HOM05D005211 ORTHO05D006148 3.0e-14 82.0 113 43.4
Prupe.8G190100 Prunus persica HOM05D005211 ORTHO05D006148 3.0e-14 82.0 103 44.7
CiPaw.13G055500 Carya illinoinensis HOM05D005211 ORTHO05D006148 3.9e-14 81.6 109 45.9
FAN27G2625 Fragaria x ananassa HOM05D005211 ORTHO05D006148 3.9e-14 81.6 117 44.4
MD05G1158700 Malus domestica HOM05D005211 ORTHO05D006148 5.1e-14 81.3 109 45.9
Oeu013415.1 Olea europaea HOM05D005211 ORTHO05D006148 5.1e-14 81.3 111 44.1
PSO675G5714 Papaver somniferum HOM05D005211 ORTHO05D006148 5.1e-14 81.3 120 43.3
THA.LOC104802290 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 5.1e-14 81.3 108 49.1
Duzib133G1390 Durio zibethinus HOM05D005211 ORTHO05D006148 6.7e-14 80.9 119 45.4
CDE07G0882 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 8.7e-14 80.5 108 47.2
Migut.D00738 Erythranthe guttata HOM05D005211 ORTHO05D006148 8.7e-14 80.5 120 43.3
FvH4_2g17750 Fragaria vesca HOM05D005211 ORTHO05D006148 8.7e-14 80.5 106 45.3
FAN24G3081 Fragaria x ananassa HOM05D005211 ORTHO05D006148 8.7e-14 80.5 106 45.3
FAN27G1389 Fragaria x ananassa HOM05D005211 ORTHO05D006148 8.7e-14 80.5 105 44.8
PGR083G0764 Punica granatum HOM05D005211 ORTHO05D006148 8.7e-14 80.5 107 47.7
Sc17g0001650 Simmondsia chinensis HOM05D005211 ORTHO05D006148 8.7e-14 80.5 105 47.6
CSS0012153 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 1.1e-13 80.1 102 46.1
CSS0028586 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 1.1e-13 80.1 102 46.1
Duzib211G0461 Durio zibethinus HOM05D005211 ORTHO05D006148 1.1e-13 80.1 120 38.3
Migut.N00665 Erythranthe guttata HOM05D005211 ORTHO05D006148 1.1e-13 80.1 104 49.0
Sp4g25190 Schrenkiella parvula HOM05D005211 ORTHO05D006148 1.5e-13 79.7 107 46.7
Aa31LG1G24830 Aethionema arabicum HOM05D005211 ORTHO05D006148 1.9e-13 79.3 105 45.7
FAN15G0641 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.5e-13 79.0 105 44.8
AL4G41710 Arabidopsis lyrata HOM05D005211 ORTHO05D006148 3.3e-13 78.6 109 44.0
CDE04G3135 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 3.3e-13 78.6 108 46.3
BcaB06g29284 Brassica carinata HOM05D005211 ORTHO05D006148 4.3e-13 78.2 109 45.9
BcaB06g29285 Brassica carinata HOM05D005211 ORTHO05D006148 4.3e-13 78.2 109 45.9
CARHR138130 Cardamine hirsuta HOM05D005211 ORTHO05D006148 4.3e-13 78.2 112 43.8
Lj1P101T27 Lonicera japonica HOM05D005211 ORTHO05D006148 4.3e-13 78.2 105 46.7
TWI18G0981 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 7.4e-13 77.4 104 45.2
AT2G43060 Arabidopsis thaliana HOM05D005211 ORTHO05D006148 9.6e-13 77.0 106 46.2
BNapus_Darmor_BZH_scaffold_64p00090 Brassica napus HOM05D005211 ORTHO05D006148 9.6e-13 77.0 106 44.3
BraA04t18707Z Brassica rapa HOM05D005211 ORTHO05D006148 9.6e-13 77.0 106 44.3
Peaxi162Scf00335g00067 Petunia axillaris HOM05D005211 ORTHO05D006148 9.6e-13 77.0 100 46.0
TWI36G1602 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 1.3e-12 76.6 107 44.9
BcaNung03535 Brassica carinata HOM05D005211 ORTHO05D006148 1.6e-12 76.3 106 44.3
Gohir.A11G142700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.6e-12 76.3 126 41.3
HPP92_023344 Vanilla planifolia HOM05D005211 ORTHO05D006148 2.1e-12 75.9 105 44.8
Actinidia23357 Actinidia chinensis HOM05D005211 ORTHO05D006148 2.8e-12 75.5 92 45.7
SGA_v2.0_scaffold77G25295 Striga asiatica HOM05D005211 ORTHO05D006148 2.8e-12 75.5 101 44.6
Thhalv10017615m.g Eutrema salsugineum HOM05D005211 ORTHO05D006148 3.7e-12 75.1 106 48.1
THA.LOC104803428 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 4.8e-12 74.7 114 41.2
Carub.0004s2554 Capsella rubella HOM05D005211 ORTHO05D006148 8.2e-12 73.9 107 44.9
FvH4_2g17760 Fragaria vesca HOM05D005211 ORTHO05D006148 8.2e-12 73.9 108 44.4
Actinidia30014 Actinidia chinensis HOM05D005211 ORTHO05D006148 1.8e-11 72.8 98 45.9
Hma1.2p1_0959F.1_g241620 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 2.4e-11 72.4 111 39.6
unitig_0.g414 Utricularia gibba HOM05D005211 ORTHO05D006148 3.1e-11 72.0 99 43.4
Dinv28809 Davidia involucrata HOM05D005211 ORTHO05D006148 4.0e-11 71.6 98 44.9
MD10G1151600 Malus domestica HOM05D005211 ORTHO05D006148 4.0e-11 71.6 119 40.3
QL09p046680 Quercus lobata HOM05D005211 ORTHO05D006148 4.0e-11 71.6 101 46.5
vmacro02818 Vaccinium macrocarpon HOM05D005211 ORTHO05D006148 4.0e-11 71.6 108 43.5
Gohir.D07G167400 Gossypium hirsutum HOM05D005211 ORTHO05D006148 5.3e-11 71.2 109 43.1
Prupe.8G190000 Prunus persica HOM05D005211 ORTHO05D006148 6.9e-11 70.9 99 47.5
A05p03550 Brassica napus HOM05D005211 ORTHO05D006148 2.0e-10 69.3 105 41.9
BraA05t19341Z Brassica rapa HOM05D005211 ORTHO05D006148 2.0e-10 69.3 105 41.9
Gohir.D11G149000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 2.6e-10 68.9 125 36.8
Rhsim13G0052900 Rhododendron simsii HOM05D005211 ORTHO05D006148 2.6e-10 68.9 102 44.1
ECA247G2119 Erigeron canadensis HOM05D005211 ORTHO05D006148 3.4e-10 68.6 117 38.5
Gorai.007G159800 Gossypium raimondii HOM05D005211 ORTHO05D006148 3.4e-10 68.6 126 37.3
AUR62028696 Chenopodium quinoa HOM05D005211 ORTHO05D006148 4.5e-10 68.2 96 44.8
CANSAT01G0934 Cannabis sativa HOM05D005211 ORTHO05D006148 5.8e-10 67.8 113 41.6
CDE02G4090 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 5.8e-10 67.8 108 41.7
FAN15G2376 Fragaria x ananassa HOM05D005211 ORTHO05D006148 5.8e-10 67.8 103 42.7
Lsat_1_v5_gn_5_178301 Lactuca sativa HOM05D005211 ORTHO05D006148 5.8e-10 67.8 124 38.7
Thecc.01G210700 Theobroma cacao HOM05D005211 ORTHO05D006148 5.8e-10 67.8 108 42.6
Os04g0660100 Oryza sativa ssp. japonica HOM05D005211 ORTHO05D006148 1.0e-09 67.0 130 37.7
Nitab4.5_0004516g0010 Nicotiana tabacum HOM05D005211 ORTHO05D006148 1.3e-09 66.6 87 48.3
CDE09G1368 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 2.2e-09 65.9 99 47.5
unitig_52.g17443 Utricularia gibba HOM05D005211 ORTHO05D006148 2.9e-09 65.5 101 42.6
BcaC02g12418 Brassica carinata HOM05D005211 ORTHO05D006148 6.5e-09 64.3 104 39.4
BolC4t22051H Brassica oleracea HOM05D005211 ORTHO05D006148 6.5e-09 64.3 104 39.4
C04p70060 Brassica napus HOM05D005211 ORTHO05D006148 8.4e-09 63.9 104 39.4
BolC4t28506H Brassica oleracea HOM05D005211 ORTHO05D006148 8.4e-09 63.9 104 39.4
Ciclev10016996m.g Citrus clementina HOM05D005211 ORTHO05D006148 8.4e-09 63.9 115 37.4
Solyc12g042010.1 Solanum lycopersicum HOM05D005211 ORTHO05D006148 8.4e-09 63.9 104 42.3
Atru.chr6.3543 Acer truncatum HOM05D005211 ORTHO05D006148 1.9e-08 62.8 42 66.7
Sopen09g012960 Solanum pennellii HOM05D005211 ORTHO05D006148 1.9e-08 62.8 104 41.3
C04p04120 Brassica napus HOM05D005211 ORTHO05D006148 2.5e-08 62.4 106 41.5
DCAR_004769 Daucus carota HOM05D005211 ORTHO05D006148 5.5e-08 61.2 99 41.4
CSS0032639 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 4.6e-07 58.2 95 37.9
MSTRG.18497 Avicennia marina HOM05D005211 ORTHO05D006148 2.3e-06 55.8 96 41.7
SEGI_10087 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 2.3e-06 55.8 51 52.9
CiPaw.07G030500 Carya illinoinensis HOM05D001624 ORTHO05D001530 5.1e-06 54.7 105 37.1
Zm00001eb432720 Zea mays HOM05D005211 ORTHO05D006148 5.1e-06 54.7 127 31.5
HanXRQChr01g0007251 Helianthus annuus HOM05D005211 ORTHO05D006148 6.7e-06 54.3 112 37.5


User provided reference genes

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