Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 0.0e+00 1792.7 950 100.0
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 0.0e+00 1612.8 951 90.0
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 0.0e+00 1587.0 951 87.5
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 0.0e+00 1581.6 951 89.0
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 0.0e+00 1444.5 978 79.2
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 0.0e+00 1163.7 1036 64.6
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 0.0e+00 1104.4 1010 63.3
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 6.5e-312 1073.5 1012 61.4
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 6.5e-278 961.1 995 55.7
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 3.2e-277 958.7 1036 55.7
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 7.9e-276 954.1 979 57.3
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 2.2e-273 946.0 997 54.8
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 8.2e-273 944.1 981 56.2
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 5.9e-271 937.9 990 54.7
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 9.4e-269 930.6 980 56.3
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 1.8e-267 926.4 973 55.8
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 1.8e-267 926.4 975 55.8
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 1.1e-266 923.7 979 55.9
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 1.5e-266 923.3 1028 54.1
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 1.3e-265 920.2 975 55.8
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 8.2e-265 917.5 1014 53.8
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 3.1e-264 915.6 1006 53.5
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 2.0e-263 912.9 984 54.3
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 2.6e-263 912.5 1002 53.9
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 2.2e-262 909.4 969 54.3
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 3.6e-260 902.1 1006 53.3
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 3.0e-259 899.0 972 55.5
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 3.9e-259 898.7 1002 52.6
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 2.6e-258 896.0 1041 51.6
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 1.4e-256 890.2 1001 53.4
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 1.0e-254 884.0 976 52.0
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 1.0e-254 884.0 1053 51.0
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 1.5e-253 880.2 989 52.4
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 3.2e-253 879.0 968 53.1
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 1.4e-251 873.6 982 53.0
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 3.0e-251 872.5 995 52.8
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 2.0e-250 869.8 982 52.1
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 2.4e-248 862.8 1027 51.0
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 4.5e-247 858.6 1034 50.5
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 2.2e-246 856.3 1025 49.8
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 6.5e-246 854.7 1033 49.9
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 6.5e-246 854.7 985 52.0
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 8.5e-246 854.4 1026 49.9
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 1.5e-245 853.6 987 52.5
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 1.5e-245 853.6 780 59.2
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 4.2e-245 852.0 1003 50.0
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 3.6e-244 849.0 978 51.2
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 5.7e-242 841.6 1041 50.0
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 4.1e-240 835.5 1017 48.6
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 1.0e-238 830.9 1039 48.2
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 1.7e-238 830.1 1041 49.5
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 2.9e-238 829.3 929 53.9
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 1.5e-237 827.0 1052 47.7
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 5.5e-237 825.1 1059 49.2
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 5.5e-237 825.1 1077 47.3
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 1.2e-236 823.9 758 58.0
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 2.8e-236 822.8 1023 48.3
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 3.6e-236 822.4 960 50.2
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 1.0e-235 820.8 1045 49.0
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 1.0e-235 820.8 1000 48.8
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 1.4e-235 820.5 799 57.7
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 1.5e-234 817.0 961 50.5
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 8.3e-233 811.2 979 50.6
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 1.1e-232 810.8 977 49.8
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 5.4e-232 808.5 943 49.8
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 7.0e-232 808.1 960 49.1
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 1.2e-231 807.4 928 50.1
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 2.9e-230 802.7 962 48.8
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 3.3e-229 799.3 1113 44.3
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 1.0e-227 794.3 1012 47.8
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 1.5e-226 790.4 961 48.9
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 9.8e-226 787.7 1059 46.0
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 4.9e-225 785.4 1009 48.2
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 6.4e-225 785.0 916 49.5
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 1.4e-224 783.9 961 49.5
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.4e-224 783.9 1010 48.0
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 6.0e-223 778.5 977 48.6
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 1.3e-222 777.3 1051 46.6
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 1.3e-222 777.3 960 48.8
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 9.5e-221 771.2 961 48.3
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 1.6e-220 770.4 986 47.4
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 6.2e-220 768.5 1032 46.5
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 2.3e-219 766.5 996 48.9
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 5.2e-219 765.4 1028 45.6
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 2.6e-218 763.1 973 47.3
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 3.4e-218 762.7 714 56.4
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 7.5e-218 761.5 720 55.4
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 6.4e-217 758.4 974 47.7
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 6.4e-217 758.4 709 56.3
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 6.4e-217 758.4 993 46.2
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 1.9e-216 756.9 939 49.9
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 5.4e-216 755.4 984 47.2
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 1.2e-215 754.2 987 47.7
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 2.3e-214 750.0 766 53.4
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 1.5e-213 747.3 971 46.9
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 3.3e-213 746.1 970 47.2
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 1.6e-212 743.8 774 51.4
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 3.1e-211 739.6 703 54.6
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 1.5e-210 737.3 972 46.4
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 3.7e-209 732.6 996 46.1
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 1.4e-208 730.7 978 46.5
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 5.4e-208 728.8 991 45.5
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 4.6e-207 725.7 715 55.5
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 7.8e-207 724.9 763 52.7
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 3.3e-205 719.5 1003 46.3
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 5.6e-205 718.8 724 53.9
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 6.9e-195 685.3 718 50.8
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 1.5e-194 684.1 976 45.8
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 6.4e-193 678.7 983 45.5
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 2.5e-189 666.8 973 43.7
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 1.3e-188 664.5 782 48.8
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 4.5e-186 656.0 771 48.0
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 1.7e-185 654.1 763 47.7
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 8.2e-172 608.6 714 48.5
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 4.1e-171 606.3 716 48.0
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 1.6e-151 541.2 735 43.3
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 2.2e-145 520.8 665 45.0
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 5.2e-142 509.6 768 41.4
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 2.7e-135 487.3 707 46.1
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 1.4e-118 431.8 701 38.4
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 1.7e-100 371.7 350 54.0
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 2.4e-99 367.9 546 37.5
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 4.9e-92 343.6 870 29.9
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 1.6e-90 338.6 521 35.3
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 4.6e-82 310.5 500 36.4
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.8e-38 165.6 151 56.3
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 1.7e-36 159.1 148 55.4
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 1.8e-25 122.5 433 24.9
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 1.9e-19 102.4 324 35.8
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 7.2e-19 100.5 217 32.3
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 3.0e-17 95.1 170 37.1
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 3.4e-16 91.7 151 39.1
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 4.4e-16 91.3 151 39.1
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 1.0e-12 80.1 101 44.6
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 1.3e-12 79.7 80 57.5
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 4.2e-11 74.7 101 43.6
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 5.7e-08 64.3 78 51.3
SGA_v2.0_scaffold57G20265 Striga asiatica HOM05D005408 ORTHO05D006790 2.4e-06 58.9 88 44.3


User provided reference genes

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