Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G3885 Fragaria x ananassa HOM05D004406 ORTHO05D005660 5.1e-204 714.1 352 100.0
FAN21G0297 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.1e-201 706.4 350 99.1
FAN25G0744 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.6e-200 701.8 350 98.0
FvH4_3g16570 Fragaria vesca HOM05D004406 ORTHO05D005660 7.1e-198 693.7 350 96.9
FAN11G0596 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.6e-197 692.6 350 96.6
RcHm_v2.0_Chr5g0027601 Rosa chinensis HOM05D004406 ORTHO05D005660 5.5e-190 667.5 350 93.1
FAN16G0888 Fragaria x ananassa HOM05D004406 ORTHO05D005660 1.1e-185 653.3 363 91.2
Prupe.4G148400 Prunus persica HOM05D004406 ORTHO05D005660 9.1e-185 650.2 350 90.3
MD05G1209100 Malus domestica HOM05D004406 ORTHO05D005660 6.1e-181 637.5 350 88.3
MD10G1195500 Malus domestica HOM05D004406 ORTHO05D005660 6.7e-180 634.0 350 88.0
Dinv26661 Davidia involucrata HOM05D004406 ORTHO05D005660 1.4e-169 599.7 350 81.1
COL.COLO4_35795 Corchorus olitorius HOM05D004406 ORTHO05D005660 5.3e-169 597.8 350 81.4
TWI38G2065 Tripterygium wilfordii HOM05D004406 ORTHO05D005660 1.3e-167 593.2 344 82.0
Dinv13306 Davidia involucrata HOM05D004406 ORTHO05D005660 1.7e-167 592.8 352 81.0
CiPaw.01G106500 Carya illinoinensis HOM05D004406 ORTHO05D005660 5.0e-167 591.3 350 80.6
VMungo1080G1685 Vigna mungo HOM05D004406 ORTHO05D005660 1.9e-166 589.3 350 79.4
arahy.Tifrunner.gnm1.ann1.L0EV17 Arachis hypogaea HOM05D004406 ORTHO05D005660 2.5e-166 589.0 350 79.4
CSS0020755 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 4.2e-166 588.2 350 80.0
Cfa019935 Carpinus fangiana HOM05D004406 ORTHO05D005660 7.2e-166 587.4 350 79.4
Manes.10G061001 Manihot esculenta HOM05D004406 ORTHO05D005660 9.4e-166 587.0 344 81.1
Thecc.01G135800 Theobroma cacao HOM05D004406 ORTHO05D005660 1.6e-165 586.3 343 81.9
vmacro12019 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.6e-165 586.3 350 80.0
Eucgr.F01412 Eucalyptus grandis HOM05D004406 ORTHO05D005660 2.7e-165 585.5 350 79.4
Lj3g0010925 Lotus japonicus HOM05D004406 ORTHO05D005660 6.1e-165 584.3 350 78.6
Ca_03669_v3 Cicer arietinum L. HOM05D004406 ORTHO05D005660 8.0e-165 583.9 346 79.5
TAR376G0792 Trochodendron aralioides HOM05D004406 ORTHO05D005660 8.0e-165 583.9 350 79.7
GSVIVG01009332001 Vitis vinifera HOM05D004406 ORTHO05D005660 8.0e-165 583.9 350 78.9
TPR.G9754 Trifolium pratense HOM05D004406 ORTHO05D005660 1.0e-164 583.6 346 79.5
vmacro15158 Vaccinium macrocarpon HOM05D004406 ORTHO05D005660 1.4e-164 583.2 350 79.7
Phvul.005G057900 Phaseolus vulgaris HOM05D004406 ORTHO05D005660 1.8e-164 582.8 350 78.9
CANSAT25G0941 Cannabis sativa HOM05D004406 ORTHO05D005660 2.3e-164 582.4 351 79.2
Potri.001G394300 Populus trichocarpa HOM05D004406 ORTHO05D005660 6.8e-164 580.9 344 81.4
Glyma.15G256700 Glycine max HOM05D004406 ORTHO05D005660 8.8e-164 580.5 350 78.3
Lalb_Chr25g0284911 Lupinus albus HOM05D004406 ORTHO05D005660 8.8e-164 580.5 351 79.2
Medtr2g069330 Medicago truncatula HOM05D004406 ORTHO05D005660 1.2e-163 580.1 346 78.6
Gorai.007G217900 Gossypium raimondii HOM05D004406 ORTHO05D005660 3.4e-163 578.6 350 79.1
Gohir.D11G203200 Gossypium hirsutum HOM05D004406 ORTHO05D005660 4.4e-163 578.2 350 79.1
Sc03g0007790 Simmondsia chinensis HOM05D004406 ORTHO05D005660 7.5e-163 577.4 345 80.3
Lj1C808G13 Lonicera japonica HOM05D004406 ORTHO05D005660 1.7e-162 576.2 350 78.3
Atru.chr9.1518 Acer truncatum HOM05D004406 ORTHO05D005660 8.3e-162 573.9 350 79.4
TAR628G1650 Trochodendron aralioides HOM05D004406 ORTHO05D005660 8.3e-162 573.9 355 77.5
Psat1g012120 Pisum sativum HOM05D004406 ORTHO05D005660 1.8e-161 572.8 346 78.3
Gohir.A11G220400 Gossypium hirsutum HOM05D004406 ORTHO05D005660 2.4e-161 572.4 350 78.6
Oeu002771.1 Olea europaea HOM05D004406 ORTHO05D005660 2.4e-161 572.4 351 77.5
Aqoxy113s002 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.2e-160 570.1 350 77.4
Aqoxy6G02573 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 1.2e-160 570.1 350 77.4
Ciclev10001005m.g Citrus clementina HOM05D004406 ORTHO05D005660 4.5e-160 568.2 355 77.2
Cpa.g.sc132.61 Carica papaya HOM05D004406 ORTHO05D005660 5.9e-160 567.8 350 78.6
Hund02309 Selenicereus undatus HOM05D004406 ORTHO05D005660 2.2e-159 565.8 350 78.0
Nn5g30617 Nelumbo nucifera HOM05D004406 ORTHO05D005660 3.8e-159 565.1 350 78.3
HanXRQChr11g0329941 Helianthus annuus HOM05D004406 ORTHO05D005660 6.5e-159 564.3 350 77.7
MSTRG.6706 Avicennia marina HOM05D004406 ORTHO05D005660 1.9e-158 562.8 350 75.7
Oeu044427.1 Olea europaea HOM05D004406 ORTHO05D005660 1.6e-157 559.7 350 76.0
Actinidia18837 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.1e-157 559.3 350 78.9
Cc05_g10180 Coffea canephora HOM05D004406 ORTHO05D005660 4.7e-157 558.1 349 75.6
EL10Ac9g22869 Beta vulgaris HOM05D004406 ORTHO05D005660 5.2e-156 554.7 350 75.7
Glyma.08G170200 Glycine max HOM05D004406 ORTHO05D005660 5.2e-156 554.7 352 75.0
Rhsim06G0184400 Rhododendron simsii HOM05D004406 ORTHO05D005660 6.8e-156 554.3 367 74.9
QL04p076605 Quercus lobata HOM05D004406 ORTHO05D005660 1.2e-155 553.5 319 82.1
PSO170G0587 Papaver somniferum HOM05D004406 ORTHO05D005660 1.5e-155 553.1 350 74.6
PSO528G0243 Papaver somniferum HOM05D004406 ORTHO05D005660 1.5e-155 553.1 350 74.6
Aqoxy6G03019 Aquilegia oxysepala HOM05D004406 ORTHO05D005660 2.0e-155 552.7 350 75.7
ECA236G4460 Erigeron canadensis HOM05D004406 ORTHO05D005660 9.8e-155 550.4 350 75.4
Sed0020103 Sechium edule HOM05D004406 ORTHO05D005660 3.7e-154 548.5 343 75.5
Peaxi162Scf00003g04835 Petunia axillaris HOM05D004406 ORTHO05D005660 6.3e-154 547.7 344 75.3
Migut.M00660 Erythranthe guttata HOM05D004406 ORTHO05D005660 1.8e-153 546.2 346 75.7
PGSC0003DMG400008359 Solanum tuberosum HOM05D004406 ORTHO05D005660 4.1e-153 545.0 350 73.7
Solyc10g078480.2 Solanum lycopersicum HOM05D004406 ORTHO05D005660 1.2e-152 543.5 350 73.4
Sopen10g029140 Solanum pennellii HOM05D004406 ORTHO05D005660 1.6e-152 543.1 350 73.4
arahy.Tifrunner.gnm1.ann1.BTSV3Q Arachis hypogaea HOM05D004406 ORTHO05D005660 3.5e-152 542.0 350 75.4
CAN.G960.55 Capsicum annuum HOM05D004406 ORTHO05D005660 9.5e-150 533.9 350 73.7
ATR0739G109 Amborella trichopoda HOM05D004406 ORTHO05D005660 2.1e-149 532.7 350 71.4
PGR004G1399 Punica granatum HOM05D004406 ORTHO05D005660 6.1e-149 531.2 339 75.8
SalBow5G0012 Salvia bowleyana HOM05D004406 ORTHO05D005660 1.0e-148 530.4 350 73.7
AUR62017618 Chenopodium quinoa HOM05D004406 ORTHO05D005660 8.9e-148 527.3 319 78.1
ClCG03G009170 Citrullus lanatus HOM05D004406 ORTHO05D005660 1.5e-147 526.6 343 72.6
Gohir.A11G222401 Gossypium hirsutum HOM05D004406 ORTHO05D005660 1.5e-147 526.6 350 73.7
unitig_62.g23080 Utricularia gibba HOM05D004406 ORTHO05D005660 5.7e-147 524.6 350 71.4
CsaV3_5G023450 Cucumis sativus L. HOM05D004406 ORTHO05D005660 2.2e-146 522.7 343 72.3
MELO3C022781.2 Cucumis melo HOM05D004406 ORTHO05D005660 4.9e-146 521.5 343 71.7
Nitab4.5_0006279g0030 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.2e-144 516.9 354 71.8
Haze_15516 Corylus avellana HOM05D004406 ORTHO05D005660 1.6e-144 516.5 350 72.6
Aa31LG7G1110 Aethionema arabicum HOM05D004406 ORTHO05D005660 1.1e-142 510.4 350 71.1
CDE06G1959 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 5.6e-142 508.1 373 67.8
BcaC05g25520 Brassica carinata HOM05D004406 ORTHO05D005660 4.0e-140 501.9 350 70.3
Zm00001eb401770 Zea mays HOM05D004406 ORTHO05D005660 5.2e-140 501.5 350 68.6
C05p14870 Brassica napus HOM05D004406 ORTHO05D005660 8.9e-140 500.7 350 70.0
CARHR017050 Cardamine hirsuta HOM05D004406 ORTHO05D005660 8.9e-140 500.7 350 69.7
AL1G28740 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.2e-139 500.4 350 70.0
BolC5t30202H Brassica oleracea HOM05D004406 ORTHO05D005660 1.2e-139 500.4 350 70.0
Os03g0180700 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 2.0e-139 499.6 350 69.4
SEGI_06613 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 2.0e-139 499.6 394 62.2
SGA_v2.0_scaffold73G24357 Striga asiatica HOM05D004406 ORTHO05D005660 2.0e-139 499.6 346 70.8
THA.LOC104808122 Tarenaya hassleriana HOM05D004406 ORTHO05D005660 2.6e-139 499.2 350 70.0
AT1G16570 Arabidopsis thaliana HOM05D004406 ORTHO05D005660 7.5e-139 497.7 350 70.0
A06p12560 Brassica napus HOM05D004406 ORTHO05D005660 7.5e-139 497.7 350 70.3
Thhalv10007520m.g Eutrema salsugineum HOM05D004406 ORTHO05D005660 1.7e-138 496.5 350 70.3
Nitab4.5_0000812g0150 Nicotiana tabacum HOM05D004406 ORTHO05D005660 1.7e-138 496.5 355 68.5
BraA06t24419Z Brassica rapa HOM05D004406 ORTHO05D005660 6.4e-138 494.6 350 70.0
BolC8t51983H Brassica oleracea HOM05D004406 ORTHO05D005660 8.3e-138 494.2 350 70.3
Sp1g14730 Schrenkiella parvula HOM05D004406 ORTHO05D005660 8.3e-138 494.2 350 70.0
Carub.0001s1633 Capsella rubella HOM05D004406 ORTHO05D005660 1.4e-137 493.4 350 69.1
C08p44420 Brassica napus HOM05D004406 ORTHO05D005660 2.4e-137 492.7 350 69.7
A09p60830 Brassica napus HOM05D004406 ORTHO05D005660 4.1e-137 491.9 350 69.7
BraA09t41456Z Brassica rapa HOM05D004406 ORTHO05D005660 4.1e-137 491.9 350 69.7
Duzib187G2008 Durio zibethinus HOM05D004406 ORTHO05D005660 7.0e-137 491.1 350 71.1
HPP92_025666 Vanilla planifolia HOM05D004406 ORTHO05D005660 6.0e-136 488.0 352 67.3
Gohir.A09G004700 Gossypium hirsutum HOM05D004406 ORTHO05D005660 3.1e-132 475.7 350 68.9
DCAR_013800 Daucus carota HOM05D004406 ORTHO05D005660 3.4e-131 472.2 359 66.9
SalBow5G1666 Salvia bowleyana HOM05D004406 ORTHO05D005660 9.5e-126 454.1 282 77.0
CDE04G2964 Ceratophyllum demersum HOM05D004406 ORTHO05D005660 2.4e-121 439.5 354 63.0
Lsat_1_v5_gn_7_99701 Lactuca sativa HOM05D004406 ORTHO05D005660 6.0e-120 434.9 351 63.5
Mapoly0116s0013 Marchantia polymorpha HOM05D004406 ORTHO05D005660 6.6e-119 431.4 394 57.1
SMO353G0172 Selaginella moellendorffii HOM05D004406 ORTHO05D005660 8.6e-119 431.0 347 62.5
Pp3c22_7820 Physcomitrium patens HOM05D004406 ORTHO05D005660 8.9e-116 421.0 374 59.6
AL6G51100 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.7e-114 416.8 350 61.1
Gorai.007G217600 Gossypium raimondii HOM05D004406 ORTHO05D005660 1.4e-105 387.1 316 65.8
Rhsim08G0107400 Rhododendron simsii HOM05D004406 ORTHO05D005660 1.4e-100 370.5 256 73.8
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 4.0e-100 369.0 339 54.9
CBR_g37525 Chara braunii HOM05D004406 ORTHO05D005660 6.9e-92 341.7 420 44.3
PSO017G0585 Papaver somniferum HOM05D004406 ORTHO05D005660 3.2e-89 332.8 239 65.7
Actinidia35181 Actinidia chinensis HOM05D004406 ORTHO05D005660 7.1e-89 331.6 350 52.3
Gohir.D11G203050 Gossypium hirsutum HOM05D004406 ORTHO05D005660 7.6e-83 311.6 276 63.8
Cre12.g516550 Chlamydomonas reinhardtii HOM05D004406 ORTHO05D005660 5.5e-81 305.4 355 45.9
SEGI_11739 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 1.6e-77 293.9 177 79.1
Gorai.006G005600 Gossypium raimondii HOM05D004406 ORTHO05D005660 3.4e-75 286.2 350 47.1
CSS0001722 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 1.0e-71 274.6 248 59.7
MCO08G055 Micromonas commoda HOM05D004406 ORTHO05D005660 1.0e-71 274.6 337 46.6
FAN04G0447 Fragaria x ananassa HOM05D004406 ORTHO05D005660 2.2e-69 266.9 176 79.5
Sabra16G0258600 Salix brachista HOM05D004406 ORTHO05D005660 4.1e-68 262.7 162 73.5
Haze_26719 Corylus avellana HOM05D004406 ORTHO05D005660 4.5e-59 232.6 358 37.7
PRCOL_00002569 Prasinoderma coloniale HOM05D004406 ORTHO05D005660 1.6e-56 224.2 362 39.8
Actinidia18838 Actinidia chinensis HOM05D004406 ORTHO05D005660 9.7e-54 214.9 288 44.8
Zm00001eb421280 Zea mays HOM05D004406 ORTHO05D005660 2.8e-53 213.4 209 52.6
Cfa025278 Carpinus fangiana HOM05D004406 ORTHO05D005660 7.0e-52 208.8 349 39.0
SEGI_33737 Sequoiadendron giganteum HOM05D004406 ORTHO05D005660 1.6e-51 207.6 203 51.7
Zm00001eb023770 Zea mays HOM05D003078 ORTHO05D003545 1.6e-51 207.6 198 53.5
SGA_v2.0_scaffold181G39778 Striga asiatica HOM05D004406 ORTHO05D005660 3.6e-48 196.4 321 38.6
AL6G51070 Arabidopsis lyrata HOM05D004406 ORTHO05D005660 1.7e-45 187.6 162 57.4
Zm00001eb180660 Zea mays HOM05D004406 ORTHO05D000467 2.1e-40 170.6 129 63.6
SHI18055 Sapria himalayana HOM05D004406 ORTHO05D005660 1.5e-38 164.5 182 52.7
SHI18054 Sapria himalayana HOM05D004406 ORTHO05D005660 3.4e-38 163.3 166 54.2
CSS0016238 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.8e-37 160.2 83 85.5
CSS0034423 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 2.8e-37 160.2 83 85.5
CSS0034904 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 8.3e-37 158.7 83 83.1
Zm00001eb005970 Zea mays HOM05D004406 ORTHO05D005660 1.2e-32 144.8 122 58.2
Os06g0564800 Oryza sativa ssp. japonica HOM05D004406 ORTHO05D005660 2.1e-32 144.1 94 74.5
Zm00001eb307610 Zea mays HOM05D004406 ORTHO05D005660 4.7e-32 142.9 92 68.5
Zm00001eb049380 Zea mays HOM05D004406 ORTHO05D005660 4.0e-31 139.8 101 66.3
CSS0028761 Camellia sinensis var. sinensis HOM05D004406 ORTHO05D005660 6.8e-31 139.0 78 76.9
Actinidia18840 Actinidia chinensis HOM05D004406 ORTHO05D005660 2.9e-29 133.7 328 30.8
Actinidia18841 Actinidia chinensis HOM05D004406 ORTHO05D005660 3.2e-28 130.2 66 93.9
Haze_08535 Corylus avellana HOM05D004406 ORTHO05D005660 3.1e-23 113.6 125 55.2
Hma1.2p1_0035F.1_g022190 Hydrangea macrophylla HOM05D004406 ORTHO05D005660 1.1e-17 95.1 58 75.9


User provided reference genes

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