Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G3783 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.3e-181 638.3 328 100.0
FvH4_3g28610 Fragaria vesca HOM05D004483 ORTHO05D005609 2.2e-177 625.5 328 98.2
FAN25G2123 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.0e-174 615.1 328 96.6
FAN25G2538 Fragaria x ananassa HOM05D004483 ORTHO05D005609 3.0e-158 562.0 374 82.1
Prupe.2G104100 Prunus persica HOM05D004483 ORTHO05D005609 4.0e-158 561.6 331 87.9
MD07G1080100 Malus domestica HOM05D004483 ORTHO05D005609 1.1e-157 560.1 328 88.1
RcHm_v2.0_Chr1g0342701 Rosa chinensis HOM05D004483 ORTHO05D005609 4.4e-157 558.1 327 88.7
FAN10G0570 Fragaria x ananassa HOM05D004483 ORTHO05D005609 7.5e-157 557.4 331 87.3
FvH4_7g07660 Fragaria vesca HOM05D004483 ORTHO05D005609 1.7e-156 556.2 331 87.0
FAN06G2294 Fragaria x ananassa HOM05D004483 ORTHO05D005609 8.2e-156 553.9 331 86.7
COL.COLO4_28409 Corchorus olitorius HOM05D004483 ORTHO05D005609 1.2e-154 550.1 331 85.2
Atru.chr13.1412 Acer truncatum HOM05D004483 ORTHO05D005609 2.9e-153 545.4 330 85.2
Lalb_Chr07g0191411 Lupinus albus HOM05D004483 ORTHO05D005609 5.0e-153 544.7 331 84.3
Ciclev10032078m.g Citrus clementina HOM05D004483 ORTHO05D005609 6.5e-153 544.3 329 85.4
Thecc.05G233500 Theobroma cacao HOM05D004483 ORTHO05D005609 6.5e-153 544.3 330 84.5
ClCG05G002520 Citrullus lanatus HOM05D004483 ORTHO05D005609 1.1e-152 543.5 327 84.1
CsaV3_3G009970 Cucumis sativus L. HOM05D004483 ORTHO05D005609 1.1e-152 543.5 334 83.2
Manes.08G157300 Manihot esculenta HOM05D004483 ORTHO05D005609 7.2e-152 540.8 325 84.9
CiPaw.12G019400 Carya illinoinensis HOM05D004483 ORTHO05D005609 9.4e-152 540.4 327 84.4
MELO3C006218.2 Cucumis melo HOM05D004483 ORTHO05D005609 1.6e-151 539.7 327 83.5
Duzib106G2041 Durio zibethinus HOM05D004483 ORTHO05D005609 1.6e-151 539.7 331 83.7
Eucgr.E01755 Eucalyptus grandis HOM05D004483 ORTHO05D005609 1.6e-151 539.7 329 83.3
arahy.Tifrunner.gnm1.ann1.WXIR9M Arachis hypogaea HOM05D004483 ORTHO05D005609 8.0e-151 537.3 331 84.3
PGR042G2637 Punica granatum HOM05D004483 ORTHO05D005609 2.3e-150 535.8 329 82.4
CANSAT78G0548 Cannabis sativa HOM05D004483 ORTHO05D005609 3.0e-150 535.4 329 83.3
Dinv43526 Davidia involucrata HOM05D004483 ORTHO05D005609 4.0e-150 535.0 327 82.9
Sabra13G0062300 Salix brachista HOM05D004483 ORTHO05D005609 8.8e-150 533.9 330 82.1
CSS0029990 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.5e-149 533.1 330 80.9
Glyma.01G118200 Glycine max HOM05D004483 ORTHO05D005609 2.0e-149 532.7 331 83.1
VMungo0331G1733 Vigna mungo HOM05D004483 ORTHO05D005609 2.0e-149 532.7 331 83.1
Potri.013G072300 Populus trichocarpa HOM05D004483 ORTHO05D005609 2.6e-149 532.3 331 82.2
Migut.N01676 Erythranthe guttata HOM05D004483 ORTHO05D005609 4.4e-149 531.6 331 81.0
Phvul.010G078100 Phaseolus vulgaris HOM05D004483 ORTHO05D005609 4.4e-149 531.6 331 82.8
TWI32G0950 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 5.7e-149 531.2 329 83.0
Nn7g36866 Nelumbo nucifera HOM05D004483 ORTHO05D005609 7.5e-149 530.8 331 83.4
TAR636G0699 Trochodendron aralioides HOM05D004483 ORTHO05D005609 7.5e-149 530.8 327 82.9
Gohir.A08G221606 Gossypium hirsutum HOM05D004483 ORTHO05D005609 9.8e-149 530.4 333 82.9
Gohir.D08G238633 Gossypium hirsutum HOM05D004483 ORTHO05D005609 9.8e-149 530.4 333 82.9
Sed0016930 Sechium edule HOM05D004483 ORTHO05D005609 9.8e-149 530.4 327 82.3
TWI34G1657 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 9.8e-149 530.4 329 82.7
Cc00_g12630 Coffea canephora HOM05D004483 ORTHO05D005609 1.7e-148 529.6 331 80.4
TPR.G40218 Trifolium pratense HOM05D004483 ORTHO05D005609 1.7e-148 529.6 331 81.9
Lj3g0001477 Lotus japonicus HOM05D004483 ORTHO05D005609 2.2e-148 529.3 328 83.8
TAR636G1741 Trochodendron aralioides HOM05D004483 ORTHO05D005609 2.8e-148 528.9 327 82.9
arahy.Tifrunner.gnm1.ann1.V3P46G Arachis hypogaea HOM05D004483 ORTHO05D005609 3.7e-148 528.5 337 82.2
Ca_04019_v3 Cicer arietinum L. HOM05D004483 ORTHO05D005609 3.7e-148 528.5 328 83.8
Rhsim07G0047000 Rhododendron simsii HOM05D004483 ORTHO05D005609 4.8e-148 528.1 331 79.8
CSS0005411 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 1.8e-147 526.2 331 80.1
Glyma.03G055200 Glycine max HOM05D004483 ORTHO05D005609 1.8e-147 526.2 331 82.2
Glyma.U006202 Glycine max HOM05D004483 ORTHO05D005609 1.8e-147 526.2 331 82.2
SGA_v2.0_scaffold95G28749 Striga asiatica HOM05D004483 ORTHO05D005609 1.8e-147 526.2 331 80.1
MSTRG.4986 Avicennia marina HOM05D004483 ORTHO05D005609 3.1e-147 525.4 328 80.2
Medtr5g046560 Medicago truncatula HOM05D004483 ORTHO05D005609 3.1e-147 525.4 331 81.0
Medtr6g049240 Medicago truncatula HOM05D004483 ORTHO05D005609 9.1e-147 523.9 331 80.4
Rhsim07G0125200 Rhododendron simsii HOM05D004483 ORTHO05D005609 9.1e-147 523.9 331 78.9
Peaxi162Scf00907g00220 Petunia axillaris HOM05D004483 ORTHO05D005609 1.6e-146 523.1 332 79.2
Sopen01g032950 Solanum pennellii HOM05D004483 ORTHO05D005609 1.6e-146 523.1 331 79.2
Solyc01g081380.4 Solanum lycopersicum HOM05D004483 ORTHO05D005609 2.7e-146 522.3 331 79.2
CAN.G992.14 Capsicum annuum HOM05D004483 ORTHO05D005609 3.5e-146 521.9 331 79.2
AUR62033324 Chenopodium quinoa HOM05D004483 ORTHO05D005609 3.5e-146 521.9 327 81.0
AUR62033335 Chenopodium quinoa HOM05D004483 ORTHO05D005609 3.5e-146 521.9 327 81.0
Hund27300 Selenicereus undatus HOM05D004483 ORTHO05D005609 5.9e-146 521.2 327 81.3
PGSC0003DMG400001780 Solanum tuberosum HOM05D004483 ORTHO05D005609 5.9e-146 521.2 331 78.9
EL10Ac1g00530 Beta vulgaris HOM05D004483 ORTHO05D005609 7.7e-146 520.8 326 81.0
AUR62004320 Chenopodium quinoa HOM05D004483 ORTHO05D005609 7.7e-146 520.8 327 80.7
vmacro13592 Vaccinium macrocarpon HOM05D004483 ORTHO05D005609 1.0e-145 520.4 358 75.1
HanXRQChr11g0343751 Helianthus annuus HOM05D004483 ORTHO05D005609 2.9e-145 518.8 328 79.9
HanXRQChr01g0019801 Helianthus annuus HOM05D004483 ORTHO05D005609 3.8e-145 518.5 327 79.5
Nitab4.5_0012495g0010 Nicotiana tabacum HOM05D004483 ORTHO05D005609 5.0e-145 518.1 332 78.3
GSVIVG01019237001 Vitis vinifera HOM05D004483 ORTHO05D005609 1.5e-144 516.5 385 71.4
Lsat_1_v5_gn_1_89980 Lactuca sativa HOM05D004483 ORTHO05D005609 2.5e-144 515.8 327 79.2
Sp6g26600 Schrenkiella parvula HOM05D004483 ORTHO05D005609 2.5e-144 515.8 327 80.4
A02p04370 Brassica napus HOM05D004483 ORTHO05D005609 3.2e-144 515.4 327 80.4
C02p09220 Brassica napus HOM05D004483 ORTHO05D005609 3.2e-144 515.4 327 80.4
BolC2t06830H Brassica oleracea HOM05D004483 ORTHO05D005609 3.2e-144 515.4 327 80.4
BraA02t05401Z Brassica rapa HOM05D004483 ORTHO05D005609 3.2e-144 515.4 327 80.4
Thhalv10014088m.g Eutrema salsugineum HOM05D004483 ORTHO05D005609 3.2e-144 515.4 327 80.4
Psat0s3493g0040 Pisum sativum HOM05D004483 ORTHO05D005609 3.2e-144 515.4 325 81.2
Potri.019G044100 Populus trichocarpa HOM05D004483 ORTHO05D005609 3.2e-144 515.4 331 80.4
CARHR195560 Cardamine hirsuta HOM05D004483 ORTHO05D005609 5.5e-144 514.6 327 80.1
Carub.0006s1586 Capsella rubella HOM05D004483 ORTHO05D005609 9.4e-144 513.8 327 79.8
Aa31LG11G12020 Aethionema arabicum HOM05D004483 ORTHO05D005609 1.2e-143 513.5 327 80.1
AT5G17620 Arabidopsis thaliana HOM05D004483 ORTHO05D005609 1.2e-143 513.5 327 79.8
Sc26g0000980 Simmondsia chinensis HOM05D004483 ORTHO05D005609 1.2e-143 513.5 327 80.1
ECA248G0203 Erigeron canadensis HOM05D004483 ORTHO05D005609 1.6e-143 513.1 328 78.4
Nitab4.5_0000792g0040 Nicotiana tabacum HOM05D004483 ORTHO05D005609 6.1e-143 511.1 325 79.1
AL6G28710 Arabidopsis lyrata HOM05D004483 ORTHO05D005609 8.0e-143 510.8 327 79.2
Cpa.g.sc73.74 Carica papaya HOM05D004483 ORTHO05D005609 4.0e-142 508.4 327 81.0
Gorai.004G254100 Gossypium raimondii HOM05D004483 ORTHO05D005609 5.2e-142 508.1 371 74.1
PSO170G6334 Papaver somniferum HOM05D004483 ORTHO05D005609 4.4e-141 505.0 331 77.9
PSO782G4616 Papaver somniferum HOM05D004483 ORTHO05D005609 1.3e-140 503.4 331 77.6
QL04p053109 Quercus lobata HOM05D004483 ORTHO05D005609 1.3e-140 503.4 455 62.4
MD02G1233500 Malus domestica HOM05D004483 ORTHO05D005609 1.6e-138 496.5 331 81.0
THA.LOC104821152 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 1.0e-137 493.8 314 79.6
BcaB08g36758 Brassica carinata HOM05D004483 ORTHO05D005609 1.3e-137 493.4 327 77.4
THA.LOC104802894 Tarenaya hassleriana HOM05D004483 ORTHO05D005609 6.6e-137 491.1 331 75.5
Cfa001833 Carpinus fangiana HOM05D004483 ORTHO05D005609 1.9e-136 489.6 331 78.2
TAR636G1618 Trochodendron aralioides HOM05D004483 ORTHO05D005609 1.9e-136 489.6 303 82.8
CDE08G1003 Ceratophyllum demersum HOM05D004483 ORTHO05D005609 1.6e-135 486.5 327 76.8
BcaC03g13531 Brassica carinata HOM05D004483 ORTHO05D005609 2.8e-135 485.7 328 77.7
TPR.G9231 Trifolium pratense HOM05D004483 ORTHO05D005609 8.9e-134 480.7 331 76.4
ATR0736G160 Amborella trichopoda HOM05D004483 ORTHO05D005609 1.2e-133 480.3 327 76.5
Os01g0869500 Oryza sativa ssp. japonica HOM05D004483 ORTHO05D005609 3.7e-132 475.3 330 74.2
SalBow4G2429 Salvia bowleyana HOM05D004483 ORTHO05D005609 7.0e-131 471.1 300 79.0
CSS0030130 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 2.3e-129 466.1 292 80.5
SEGI_12813 Sequoiadendron giganteum HOM05D004483 ORTHO05D005609 1.9e-128 463.0 330 72.4
Medtr4g017150 Medicago truncatula HOM05D004483 ORTHO05D005609 3.6e-127 458.8 331 74.0
Zm00001eb172120 Zea mays HOM05D004483 ORTHO05D005609 2.0e-125 453.0 326 71.8
DCAR_025006 Daucus carota HOM05D004483 ORTHO05D005609 1.9e-123 446.4 324 72.2
Actinidia05827 Actinidia chinensis HOM05D004483 ORTHO05D005609 1.2e-122 443.7 326 71.8
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 6.2e-119 431.4 279 79.2
Lj7A559T94 Lonicera japonica HOM05D004483 ORTHO05D005609 2.3e-118 429.5 335 69.3
unitig_61.g26200 Utricularia gibba HOM05D004483 ORTHO05D005609 1.3e-105 387.1 323 65.3
TPR.G14295 Trifolium pratense HOM05D004483 ORTHO05D005609 4.7e-103 378.6 234 82.5
Pp3c21_22490 Physcomitrium patens HOM05D004483 ORTHO05D005609 8.1e-103 377.9 324 57.7
Mapoly0042s0051 Marchantia polymorpha HOM05D004483 ORTHO05D005609 6.8e-102 374.8 330 59.7
SMO266G0007 Selaginella moellendorffii HOM05D004483 ORTHO05D005609 1.5e-101 373.6 318 60.1
CSS0038619 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 2.1e-98 363.2 233 78.5
BraA10t44239Z Brassica rapa HOM05D004483 ORTHO05D005609 2.5e-96 356.3 314 62.1
A10p21790 Brassica napus HOM05D004483 ORTHO05D005609 2.8e-95 352.8 272 69.9
HPP92_018030 Vanilla planifolia HOM05D004483 ORTHO05D005609 6.6e-89 331.6 240 68.8
Cfa003690 Carpinus fangiana HOM05D004483 ORTHO05D005609 1.1e-88 330.9 338 59.8
MD02G1233800 Malus domestica HOM05D004483 ORTHO05D005609 5.6e-88 328.6 197 87.3
Peaxi162Scf00040g00103 Petunia axillaris HOM05D004483 ORTHO05D005609 2.2e-84 316.6 227 70.9
BcaC04g18774 Brassica carinata HOM05D004483 ORTHO05D005609 6.0e-82 308.5 333 56.2
Haze_16727 Corylus avellana HOM05D004483 ORTHO05D005609 6.2e-79 298.5 220 75.0
Haze_25407 Corylus avellana HOM05D004483 ORTHO05D005609 3.4e-77 292.7 220 73.2
Haze_15797 Corylus avellana HOM05D004483 ORTHO05D005609 1.3e-73 280.8 220 72.3
Oeu041518.1 Olea europaea HOM05D004483 ORTHO05D005609 2.5e-72 276.6 167 82.6
CBR_g5742 Chara braunii HOM05D004483 ORTHO05D005609 3.3e-72 276.2 333 45.0
Duzib106G1834 Durio zibethinus HOM05D004483 ORTHO05D005609 8.5e-68 261.5 164 81.7
Migut.O00822 Erythranthe guttata HOM05D004483 ORTHO05D005609 1.2e-66 257.7 164 77.4
C09p59550 Brassica napus HOM05D004483 ORTHO05D005609 2.6e-61 240.0 327 48.6
Haze_16728 Corylus avellana HOM05D004483 ORTHO05D005609 4.5e-61 239.2 135 86.7
Actinidia31738 Actinidia chinensis HOM05D004483 ORTHO05D005609 3.9e-57 226.1 266 51.5
Haze_15798 Corylus avellana HOM05D004483 ORTHO05D005609 1.7e-55 220.7 130 85.4
FAN16G0129 Fragaria x ananassa HOM05D004483 ORTHO05D005609 1.6e-50 204.1 105 98.1
BolC9t58793H Brassica oleracea HOM05D004483 ORTHO05D005609 6.7e-41 172.2 160 60.6
SHI14405 Sapria himalayana HOM05D004483 ORTHO05D005609 2.2e-39 167.2 150 60.7
RcHm_v2.0_Chr2g0157591 Rosa chinensis HOM05D004483 ORTHO05D005609 3.1e-38 163.3 89 88.8
MD02G1235300 Malus domestica HOM05D004483 ORTHO05D005609 2.0e-37 160.6 91 89.0
MD09G1234100 Malus domestica HOM05D004483 ORTHO05D005609 6.5e-36 155.6 103 77.7
SHI14408 Sapria himalayana HOM05D004483 ORTHO05D005609 1.6e-34 151.0 186 50.5
arahy.Tifrunner.gnm1.ann1.H3K4HU Arachis hypogaea HOM05D004483 ORTHO05D005609 4.1e-30 136.3 90 78.9
TWI32G0329 Tripterygium wilfordii HOM05D004483 ORTHO05D005609 7.7e-29 132.1 77 85.7
MD02G1233900 Malus domestica HOM05D004483 ORTHO05D005609 2.2e-28 130.6 69 88.4
RcHm_v2.0_Chr3g0469881 Rosa chinensis HOM05D004483 ORTHO05D005609 2.5e-27 127.1 72 83.3
Peaxi162Scf00040g00102 Petunia axillaris HOM05D004483 ORTHO05D005609 1.0e-25 121.7 88 69.3
arahy.Tifrunner.gnm1.ann1.RIX38N Arachis hypogaea HOM05D004483 ORTHO05D005609 2.0e-24 117.5 82 73.2
arahy.Tifrunner.gnm1.ann1.AX0BTM Arachis hypogaea HOM05D004483 ORTHO05D005609 2.6e-24 117.1 72 83.3
Medtr5g046460 Medicago truncatula HOM05D004483 ORTHO05D005609 3.4e-24 116.7 74 78.4
CSS0040869 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D005609 5.7e-24 115.9 75 76.0
RcHm_v2.0_Chr1g0342751 Rosa chinensis HOM05D004483 ORTHO05D005609 5.7e-24 115.9 69 82.6
MD02G1234000 Malus domestica HOM05D004483 ORTHO05D005609 1.7e-23 114.4 66 87.9
Haze_25412 Corylus avellana HOM05D004483 ORTHO05D005609 9.5e-19 98.6 65 76.9
BcaC03g13840 Brassica carinata HOM05D007309 ORTHO05D040036 2.9e-07 60.5 46 60.9
CSS0035749 Camellia sinensis var. sinensis HOM05D004483 ORTHO05D111617 1.1e-06 58.5 33 81.8
arahy.Tifrunner.gnm1.ann1.LP3G76 Arachis hypogaea HOM05D004483 ORTHO05D083770 2.4e-06 57.4 85 48.2


User provided reference genes

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