Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.7e-81 305.4 174 100.0
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.8e-78 295.4 174 97.7
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 5.3e-77 291.2 174 97.1
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 9.0e-77 290.4 174 97.1
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.5e-74 282.3 174 95.4
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 2.4e-69 265.8 178 87.6
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 8.5e-51 204.1 174 74.7
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 5.2e-48 194.9 174 71.8
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 6.3e-46 188.0 172 70.9
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 2.2e-30 136.3 126 70.6
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 3.7e-30 135.6 126 69.8
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 7.0e-29 131.3 169 55.0
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 1.2e-28 130.6 126 67.5
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 2.0e-28 129.8 123 67.5
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 2.0e-28 129.8 173 56.6
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 4.5e-28 128.6 182 53.8
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 1.3e-27 127.1 169 54.4
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 1.5e-26 123.6 169 53.8
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 2.8e-25 119.4 172 53.5
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 2.8e-25 119.4 169 50.3
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 2.3e-24 116.3 168 50.6
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 5.2e-24 115.2 171 55.0
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 2.6e-23 112.8 106 67.9
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 3.4e-23 112.5 172 50.0
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 3.4e-23 112.5 172 52.9
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 4.4e-23 112.1 173 50.9
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 4.4e-23 112.1 182 51.1
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 1.7e-22 110.2 156 51.3
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.7e-22 110.2 113 68.1
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 1.7e-22 110.2 176 52.8
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.2e-22 109.8 134 56.7
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 2.2e-22 109.8 180 51.7
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 2.2e-22 109.8 178 48.3
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 2.2e-22 109.8 125 60.8
FvH4_3g42261 Fragaria vesca HOM05D019050 ORTHO05D035443 2.8e-22 109.4 199 50.3
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 3.7e-22 109.0 175 49.7
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 3.7e-22 109.0 169 52.7
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 3.7e-22 109.0 125 60.0
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 4.9e-22 108.6 126 57.1
FAN16G1216 Fragaria x ananassa HOM05D019050 ORTHO05D035374 4.9e-22 108.6 199 50.3
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 1.1e-21 107.5 126 61.9
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 1.1e-21 107.5 130 60.0
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 1.4e-21 107.1 103 70.9
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 1.4e-21 107.1 132 56.8
FAN11G3625 Fragaria x ananassa HOM05D019050 ORTHO05D035443 2.4e-21 106.3 162 54.3
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 4.1e-21 105.5 113 61.1
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 4.1e-21 105.5 113 61.1
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 4.1e-21 105.5 113 61.1
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 4.1e-21 105.5 127 59.8
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 4.1e-21 105.5 110 59.1
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 5.4e-21 105.1 167 49.1
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 1.6e-20 103.6 172 45.3
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 2.0e-20 103.2 184 51.1
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 1.7e-19 100.1 182 50.0
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.7e-19 100.1 103 64.1
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 2.3e-19 99.8 103 64.1
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.3e-19 99.8 134 53.0
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.3e-19 99.8 103 62.1
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 2.3e-19 99.8 98 65.3
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 2.9e-19 99.4 101 63.4
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 3.8e-19 99.0 102 63.7
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 1.1e-18 97.4 171 46.8
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 1.5e-18 97.1 171 46.2
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 1.9e-18 96.7 103 62.1
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 3.3e-18 95.9 170 50.0
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 4.3e-18 95.5 156 41.7
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 4.3e-18 95.5 169 47.3
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 5.6e-18 95.1 137 52.6
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 5.6e-18 95.1 129 55.8
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 5.6e-18 95.1 127 53.5
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 5.6e-18 95.1 99 65.7
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 5.6e-18 95.1 171 46.2
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 9.5e-18 94.4 108 64.8
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 1.2e-17 94.0 171 45.6
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 1.2e-17 94.0 184 47.8
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 2.1e-17 93.2 135 51.1
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 2.8e-17 92.8 102 63.7
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 2.8e-17 92.8 100 64.0
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 3.6e-17 92.4 170 45.9
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 3.6e-17 92.4 170 48.8
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 4.7e-17 92.0 95 65.3
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 4.7e-17 92.0 128 56.2
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 6.1e-17 91.7 118 55.9
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 6.1e-17 91.7 118 55.9
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 6.1e-17 91.7 128 53.1
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 6.1e-17 91.7 171 43.3
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 8.0e-17 91.3 169 45.6
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 1.4e-16 90.5 111 59.5
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 1.4e-16 90.5 166 46.4
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 1.4e-16 90.5 143 49.7
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 1.8e-16 90.1 114 55.3
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 2.3e-16 89.7 166 46.4
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 3.0e-16 89.4 180 48.9
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 8.9e-16 87.8 173 45.7
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 1.2e-15 87.4 86 68.6
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 1.2e-15 87.4 86 68.6
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 1.5e-15 87.0 97 63.9
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 2.0e-15 86.7 124 52.4
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 2.6e-15 86.3 87 69.0
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 3.4e-15 85.9 97 59.8
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 5.8e-15 85.1 96 62.5
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 5.8e-15 85.1 105 63.8
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 7.5e-15 84.7 149 46.3
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 7.5e-15 84.7 171 47.4
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 9.8e-15 84.3 171 43.9
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 9.8e-15 84.3 163 47.2
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 1.3e-14 84.0 103 61.2
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 1.7e-14 83.6 86 65.1
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 2.9e-14 82.8 97 61.9
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 2.9e-14 82.8 163 44.8
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 2.9e-14 82.8 168 48.2
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 3.7e-14 82.4 96 59.4
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 4.9e-14 82.0 128 48.4
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 4.9e-14 82.0 128 48.4
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 4.9e-14 82.0 128 48.4
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 4.9e-14 82.0 173 46.2
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 4.9e-14 82.0 176 44.3
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 6.4e-14 81.6 172 45.9
FAN21G1050 Fragaria x ananassa HOM05D019050 ORTHO05D204215 6.4e-14 81.6 200 46.0
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 6.4e-14 81.6 99 62.6
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 8.3e-14 81.3 124 52.4
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 8.3e-14 81.3 179 45.3
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 1.1e-13 80.9 172 45.9
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 1.1e-13 80.9 104 56.7
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 1.1e-13 80.9 101 57.4
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.1e-13 80.9 109 57.8
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.4e-13 80.5 105 56.2
Atru.chr2.3835 Acer truncatum HOM05D004577 ORTHO05D005062 1.8e-13 80.1 179 45.3
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 2.4e-13 79.7 172 45.3
FAN25G0864 Fragaria x ananassa HOM05D019050 ORTHO05D035443 4.1e-13 79.0 161 46.0
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 5.4e-13 78.6 110 55.5
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 7.0e-13 78.2 172 44.8
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 9.2e-13 77.8 172 44.8
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 1.2e-12 77.4 168 45.8
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 1.2e-12 77.4 210 38.1
Potri.001G371500 Populus trichocarpa HOM05D004577 ORTHO05D005062 2.0e-12 76.6 176 42.6
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 6.0e-12 75.1 98 57.1
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 7.8e-12 74.7 110 55.5
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 1.0e-11 74.3 86 64.0
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 1.3e-11 73.9 92 55.4
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 1.7e-11 73.6 98 56.1
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 2.3e-11 73.2 97 59.8
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 3.0e-11 72.8 151 43.7
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 5.0e-11 72.0 67 71.6
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 5.0e-11 72.0 113 51.3
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 8.6e-11 71.2 104 48.1
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 4.3e-10 68.9 71 66.2
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 2.8e-09 66.2 67 67.2
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 3.6e-09 65.9 67 59.7
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 4.7e-09 65.5 167 37.7
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 6.2e-09 65.1 67 65.7
Duzib268G0228 Durio zibethinus HOM05D004577 ORTHO05D005062 6.8e-08 61.6 105 44.8
Ca_04555_v3 Cicer arietinum L. HOM05D011393 ORTHO05D013493 3.4e-07 59.3 164 37.2
Rhsim06G0184100 Rhododendron simsii HOM05D041616 ORTHO05D005062 5.8e-07 58.5 98 54.1
vmacro12024 Vaccinium macrocarpon HOM05D041616 ORTHO05D005062 2.2e-06 56.6 162 40.7


User provided reference genes

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