Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G3657 Fragaria x ananassa HOM05D007501 ORTHO05D009528 4.9e-105 384.4 186 100.0
FAN25G1377 Fragaria x ananassa HOM05D007501 ORTHO05D009528 2.7e-103 378.6 186 98.4
FvH4_3g17620 Fragaria vesca HOM05D007501 ORTHO05D009528 3.3e-101 371.7 186 97.8
FAN11G3003 Fragaria x ananassa HOM05D007501 ORTHO05D009528 3.3e-101 371.7 186 97.8
RcHm_v2.0_Chr5g0029351 Rosa chinensis HOM05D007501 ORTHO05D009528 6.0e-95 350.9 187 92.0
MD11G1270900 Malus domestica HOM05D007501 ORTHO05D009528 4.5e-66 255.0 187 71.1
MD03G1250700 Malus domestica HOM05D007501 ORTHO05D009528 1.7e-65 253.1 170 73.5
Prupe.4G155600 Prunus persica HOM05D007501 ORTHO05D009528 9.7e-61 237.3 189 67.7
GSVIVG01014087001 Vitis vinifera HOM05D007501 ORTHO05D009528 1.8e-46 189.9 189 54.5
QL08p025249 Quercus lobata HOM05D007501 ORTHO05D009528 3.9e-46 188.7 197 55.3
CSS0000849 Camellia sinensis var. sinensis HOM05D007501 ORTHO05D009528 6.7e-46 188.0 186 52.2
Gohir.D11G302600 Gossypium hirsutum HOM05D007501 ORTHO05D009528 1.7e-44 183.3 192 53.6
Gorai.007G332200 Gossypium raimondii HOM05D007501 ORTHO05D009528 2.2e-44 183.0 192 53.6
Gohir.A11G289800 Gossypium hirsutum HOM05D007501 ORTHO05D009528 4.8e-44 181.8 192 54.2
COL.COLO4_03607 Corchorus olitorius HOM05D007501 ORTHO05D009528 3.1e-43 179.1 193 52.8
Duzib213G0875 Durio zibethinus HOM05D007501 ORTHO05D009528 7.0e-43 177.9 186 54.3
Haze_08443 Corylus avellana HOM05D007501 ORTHO05D009528 1.3e-41 173.7 187 53.5
Eucgr.F01372 Eucalyptus grandis HOM05D007501 ORTHO05D009528 1.7e-41 173.3 167 55.7
Dinv13355 Davidia involucrata HOM05D007501 ORTHO05D009528 1.9e-40 169.9 186 54.3
Actinidia03620 Actinidia chinensis HOM05D007501 ORTHO05D009528 1.6e-39 166.8 187 51.3
TWI39G1127 Tripterygium wilfordii HOM05D007501 ORTHO05D009528 1.6e-39 166.8 161 55.9
Cfa019508 Carpinus fangiana HOM05D007501 ORTHO05D009528 2.7e-39 166.0 189 50.8
Manes.15G099000 Manihot esculenta HOM05D007501 ORTHO05D009528 4.7e-39 165.2 199 49.2
HanXRQChr11g0331231 Helianthus annuus HOM05D007501 ORTHO05D009528 5.2e-38 161.8 190 50.0
Oeu059251.1 Olea europaea HOM05D007501 ORTHO05D009528 6.7e-38 161.4 189 50.3
PSO541G4098 Papaver somniferum HOM05D007501 ORTHO05D009528 6.7e-38 161.4 191 47.6
Phvul.011G168000 Phaseolus vulgaris HOM05D007501 ORTHO05D009528 6.7e-38 161.4 209 46.9
Thecc.07G134800 Theobroma cacao HOM05D007501 ORTHO05D009528 6.7e-38 161.4 196 49.5
arahy.Tifrunner.gnm1.ann1.5U50EQ Arachis hypogaea HOM05D007501 ORTHO05D009528 1.2e-37 160.6 185 50.8
Ciclev10024060m.g Citrus clementina HOM05D007501 ORTHO05D009528 1.5e-37 160.2 191 49.7
vmacro09418 Vaccinium macrocarpon HOM05D007501 ORTHO05D009528 1.5e-37 160.2 217 46.1
Glyma.15G210500 Glycine max HOM05D007501 ORTHO05D009528 3.3e-37 159.1 208 48.1
Glyma.15G211700 Glycine max HOM05D007501 ORTHO05D009528 3.3e-37 159.1 206 46.6
RhsimUnG0206300 Rhododendron simsii HOM05D007501 ORTHO05D009528 7.5e-37 157.9 182 53.3
VMungo1127G2061 Vigna mungo HOM05D007501 ORTHO05D009528 7.5e-37 157.9 213 46.0
Lj3g0021891 Lotus japonicus HOM05D007501 ORTHO05D009528 9.7e-37 157.5 206 45.6
PSO675G1715 Papaver somniferum HOM05D007501 ORTHO05D009528 9.7e-37 157.5 189 46.0
Potri.011G103500 Populus trichocarpa HOM05D007501 ORTHO05D009528 9.7e-37 157.5 194 49.0
PGR083G0065 Punica granatum HOM05D007501 ORTHO05D009528 8.3e-36 154.5 189 48.7
Cc05_g10640 Coffea canephora HOM05D007501 ORTHO05D009528 1.1e-35 154.1 197 49.7
Manes.03G078700 Manihot esculenta HOM05D007501 ORTHO05D009528 2.4e-35 152.9 201 46.3
Nn3g20958 Nelumbo nucifera HOM05D007501 ORTHO05D009528 9.1e-35 151.0 165 52.1
Sabra11G0077300 Salix brachista HOM05D007501 ORTHO05D009528 9.1e-35 151.0 193 47.7
PGSC0003DMG400021255 Solanum tuberosum HOM05D007501 ORTHO05D009528 1.6e-34 150.2 186 45.7
CANSAT56G4361 Cannabis sativa HOM05D007501 ORTHO05D009528 2.7e-34 149.4 207 45.9
Sabra11G0082200 Salix brachista HOM05D007501 ORTHO05D009528 4.5e-34 148.7 193 47.2
CiPaw.12G110200 Carya illinoinensis HOM05D007501 ORTHO05D009528 1.0e-33 147.5 195 51.3
ECA236G0060 Erigeron canadensis HOM05D007501 ORTHO05D009528 3.8e-33 145.6 188 46.3
Potri.001G382800 Populus trichocarpa HOM05D007501 ORTHO05D009528 5.0e-33 145.2 200 47.5
Sopen10g003430 Solanum pennellii HOM05D007501 ORTHO05D009528 5.0e-33 145.2 186 45.7
Solyc10g007490.2 Solanum lycopersicum HOM05D007501 ORTHO05D009528 5.5e-32 141.7 186 44.6
Peaxi162Scf01338g00001 Petunia axillaris HOM05D007501 ORTHO05D009528 8.0e-31 137.9 166 47.6
AL3G27070 Arabidopsis lyrata HOM05D007501 ORTHO05D009528 2.3e-30 136.3 186 44.6
THA.LOC104822580 Tarenaya hassleriana HOM05D007501 ORTHO05D009528 4.0e-30 135.6 188 45.2
AT3G14760 Arabidopsis thaliana HOM05D007501 ORTHO05D009528 5.2e-30 135.2 188 43.6
BraA01t03953Z Brassica rapa HOM05D007501 ORTHO05D009528 6.8e-30 134.8 186 43.0
Psat4g135600 Pisum sativum HOM05D007501 ORTHO05D009528 6.8e-30 134.8 216 43.1
CARHR089710 Cardamine hirsuta HOM05D007501 ORTHO05D009528 8.8e-30 134.4 188 42.0
arahy.Tifrunner.gnm1.ann1.652QPS Arachis hypogaea HOM05D007501 ORTHO05D009528 1.2e-29 134.0 183 47.0
BolC1t04925H Brassica oleracea HOM05D007501 ORTHO05D009528 1.2e-29 134.0 186 43.0
Aqoxy4G00171 Aquilegia oxysepala HOM05D007501 ORTHO05D009528 1.5e-29 133.7 188 45.2
Thhalv10021658m.g Eutrema salsugineum HOM05D007501 ORTHO05D009528 2.0e-29 133.3 186 44.1
SGA_v2.0_scaffold73G24380 Striga asiatica HOM05D007501 ORTHO05D009528 3.4e-29 132.5 192 42.2
Cpa.g.sc682.2 Carica papaya HOM05D007501 ORTHO05D009528 4.4e-29 132.1 167 46.7
C01p49690 Brassica napus HOM05D007501 ORTHO05D009528 9.8e-29 131.0 186 43.0
Carub.0003s1443 Capsella rubella HOM05D007501 ORTHO05D009528 9.8e-29 131.0 188 43.1
TPR.G16483 Trifolium pratense HOM05D007501 ORTHO05D009528 1.3e-28 130.6 222 41.0
Medtr8g042500 Medicago truncatula HOM05D007501 ORTHO05D009528 1.7e-28 130.2 219 41.1
Sp3g12990 Schrenkiella parvula HOM05D007501 ORTHO05D009528 3.7e-28 129.0 186 40.3
DCAR_019618 Daucus carota HOM05D007501 ORTHO05D009528 8.3e-28 127.9 192 44.3
A01p39060 Brassica napus HOM05D007501 ORTHO05D009528 1.8e-27 126.7 186 41.9
AUR62013946 Chenopodium quinoa HOM05D007501 ORTHO05D009528 1.1e-24 117.5 163 43.6
Aa31LG8G1980 Aethionema arabicum HOM05D007501 ORTHO05D009528 4.2e-24 115.5 186 37.1
SalBow8G3616 Salvia bowleyana HOM05D007501 ORTHO05D009528 2.1e-23 113.2 170 41.2
BcaC09g48445 Brassica carinata HOM05D007501 ORTHO05D009528 1.4e-22 110.5 175 40.6
Sopen07g030380 Solanum pennellii HOM05D007501 ORTHO05D009528 2.3e-22 109.8 167 38.9
Dinv26703 Davidia involucrata HOM05D007501 ORTHO05D009528 6.8e-22 108.2 132 46.2
Nitab4.5_0008460g0030 Nicotiana tabacum HOM05D007501 ORTHO05D009528 6.8e-22 108.2 160 41.9
Peaxi162Scf00111g00124 Petunia axillaris HOM05D007501 ORTHO05D009528 6.8e-22 108.2 158 43.0
CAN.G375.54 Capsicum annuum HOM05D007501 ORTHO05D009528 1.2e-21 107.5 158 40.5
unitig_62.g23076 Utricularia gibba HOM05D006003 ORTHO05D007388 1.2e-21 107.5 160 41.2
Nitab4.5_0000383g0020 Nicotiana tabacum HOM05D007501 ORTHO05D009528 1.5e-21 107.1 146 39.7
AUR62019665 Chenopodium quinoa HOM05D007501 ORTHO05D009528 2.6e-21 106.3 163 40.5
MELO3C027342.2 Cucumis melo HOM05D007501 ORTHO05D009528 5.7e-21 105.1 162 40.7
CsaV3_4G032800 Cucumis sativus L. HOM05D007501 ORTHO05D009528 2.2e-20 103.2 188 38.8
Nitab4.5_0001140g0140 Nicotiana tabacum HOM05D007501 ORTHO05D009528 6.3e-20 101.7 160 40.0
Migut.M00689 Erythranthe guttata HOM05D007501 ORTHO05D009528 1.1e-19 100.9 167 40.7
PGSC0003DMG400043590 Solanum tuberosum HOM05D007501 ORTHO05D009528 1.1e-19 100.9 167 37.1
Lalb_Chr03g0031351 Lupinus albus HOM05D007501 ORTHO05D009528 5.4e-19 98.6 164 42.7
ATR0681G022 Amborella trichopoda HOM05D007501 ORTHO05D009528 7.0e-19 98.2 164 44.5
ClCG11G017140 Citrullus lanatus HOM05D007501 ORTHO05D009528 9.2e-19 97.8 160 38.8
Sed0021060 Sechium edule HOM05D007501 ORTHO05D009528 2.1e-15 86.7 188 36.2
EL10Ac4g08429 Beta vulgaris HOM05D007501 ORTHO05D009528 2.3e-14 83.2 142 34.5
Peaxi162Scf00069g01713 Petunia axillaris HOM05D007501 ORTHO05D009528 4.0e-14 82.4 94 48.9
Os02g0321600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 1.2e-10 70.9 57 52.6
Zm00001eb314570 Zea mays HOM05D007501 ORTHO05D009528 2.0e-10 70.1 58 60.3
Zm00001eb055040 Zea mays HOM05D007501 ORTHO05D009528 3.5e-10 69.3 71 54.9
Zm00001eb100670 Zea mays HOM05D007501 ORTHO05D009528 7.3e-08 61.6 32 68.8
Os02g0320600 Oryza sativa ssp. japonica HOM05D007501 ORTHO05D009528 1.2e-07 60.8 31 80.6
MD13G1047600 Malus domestica HOM05D002803 ORTHO05D003089 6.2e-07 58.5 59 50.8
SEGI_41065 Sequoiadendron giganteum HOM05D007501 ORTHO05D009528 1.1e-06 57.8 94 37.2
Gohir.D06G116200 Gossypium hirsutum HOM05D007964 ORTHO05D010090 4.0e-06 55.8 36 61.1
SEGI_16996 Sequoiadendron giganteum HOM05D007501 ORTHO05D009528 4.0e-06 55.8 155 33.5
Gohir.A06G112000 Gossypium hirsutum HOM05D007964 ORTHO05D010090 5.2e-06 55.5 40 55.0
Gorai.010G134000 Gossypium raimondii HOM05D007964 ORTHO05D010090 6.8e-06 55.1 36 61.1


User provided reference genes

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