Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G3569 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1249.2 645 100.0
FvH4_3g21780 Fragaria vesca HOM05D003993 ORTHO05D005336 0.0e+00 1213.4 662 95.6
FAN25G1663 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1204.5 671 94.3
FAN11G2565 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1192.9 676 92.8
FAN16G1112 Fragaria x ananassa HOM05D003993 ORTHO05D005336 0.0e+00 1189.9 684 92.1
RcHm_v2.0_Chr5g0037331 Rosa chinensis HOM05D003993 ORTHO05D005336 0.0e+00 1157.5 663 90.5
Prupe.4G202100 Prunus persica HOM05D003993 ORTHO05D005336 7.0e-308 1060.1 663 81.0
MD11G1227200 Malus domestica HOM05D003993 ORTHO05D005336 1.7e-306 1055.4 663 79.8
MD03G1211800 Malus domestica HOM05D003993 ORTHO05D005336 5.5e-305 1050.4 663 80.1
Cfa020417 Carpinus fangiana HOM05D003993 ORTHO05D005336 3.2e-297 1024.6 663 76.3
CiPaw.11G183500 Carya illinoinensis HOM05D003993 ORTHO05D005336 9.1e-292 1006.5 663 77.5
CANSAT11G1844 Cannabis sativa HOM05D003993 ORTHO05D005336 1.6e-291 1005.7 664 76.8
Thecc.07G054200 Theobroma cacao HOM05D003993 ORTHO05D005336 2.2e-285 985.3 663 76.5
QL08p013350 Quercus lobata HOM05D003993 ORTHO05D005336 3.5e-283 978.0 664 73.9
Nn1g03663 Nelumbo nucifera HOM05D003993 ORTHO05D005336 5.9e-283 977.2 662 75.1
Haze_09608 Corylus avellana HOM05D003993 ORTHO05D005336 1.7e-282 975.7 663 74.1
Potri.001G417200 Populus trichocarpa HOM05D003993 ORTHO05D005336 1.1e-281 973.0 663 73.9
Sabra11G0119600 Salix brachista HOM05D003993 ORTHO05D005336 3.3e-281 971.5 663 72.9
Gohir.A01G074400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 5.6e-281 970.7 663 72.2
Dinv22306 Davidia involucrata HOM05D003993 ORTHO05D005336 7.3e-281 970.3 663 73.5
Potri.011G132800 Populus trichocarpa HOM05D003993 ORTHO05D005336 9.5e-281 969.9 663 73.8
TAR624G0674 Trochodendron aralioides HOM05D003993 ORTHO05D005336 2.8e-280 968.4 664 72.9
Gorai.002G082300 Gossypium raimondii HOM05D003993 ORTHO05D005336 1.2e-278 963.0 663 71.6
Gohir.D01G060900 Gossypium hirsutum HOM05D003993 ORTHO05D005336 2.0e-278 962.2 663 71.6
Manes.15G076600 Manihot esculenta HOM05D003993 ORTHO05D005336 3.7e-277 958.0 663 72.7
Lalb_Chr19g0134741 Lupinus albus HOM05D003993 ORTHO05D005336 5.4e-276 954.1 663 71.0
ClCG10G005790 Citrullus lanatus HOM05D003993 ORTHO05D005336 1.2e-275 953.0 663 72.9
TAR626G1606 Trochodendron aralioides HOM05D003993 ORTHO05D005336 2.7e-275 951.8 645 76.6
CSS0003157 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 1.0e-274 949.9 663 71.2
CSS0014856 Camellia sinensis var. sinensis HOM05D003993 ORTHO05D005336 1.0e-274 949.9 663 71.2
Lj3g0021702 Lotus japonicus HOM05D003993 ORTHO05D005336 3.9e-274 948.0 663 72.7
TWI39G1096 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 6.6e-274 947.2 663 71.0
Actinidia09963 Actinidia chinensis HOM05D003993 ORTHO05D005336 8.6e-274 946.8 664 72.4
PSO675G0751 Papaver somniferum HOM05D003993 ORTHO05D005336 8.6e-274 946.8 666 73.9
vmacro11768 Vaccinium macrocarpon HOM05D003993 ORTHO05D005336 1.1e-273 946.4 660 70.6
Medtr2g082910 Medicago truncatula HOM05D003993 ORTHO05D005336 4.3e-273 944.5 663 73.5
TWI38G0109 Tripterygium wilfordii HOM05D003993 ORTHO05D005336 4.3e-273 944.5 663 70.9
Glyma.13G287100 Glycine max HOM05D003993 ORTHO05D005336 2.8e-272 941.8 663 71.2
Ciclev10007272m.g Citrus clementina HOM05D003993 ORTHO05D005336 6.2e-272 940.6 664 70.8
Glyma.12G214500 Glycine max HOM05D003993 ORTHO05D005336 8.0e-272 940.3 663 70.7
Phvul.005G091400 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 1.0e-271 939.9 663 71.2
PSO541G2178 Papaver somniferum HOM05D003993 ORTHO05D005336 2.6e-270 935.3 666 73.1
Ca_01754_v3 Cicer arietinum L. HOM05D003993 ORTHO05D005336 3.4e-270 934.9 666 70.3
MELO3C025431.2 Cucumis melo HOM05D003993 ORTHO05D005336 3.4e-270 934.9 663 71.5
VMungo1080G1710 Vigna mungo HOM05D003993 ORTHO05D005336 3.4e-270 934.9 663 71.0
PGR031G1242 Punica granatum HOM05D003993 ORTHO05D005336 4.4e-270 934.5 664 72.9
Eucgr.F03424 Eucalyptus grandis HOM05D003993 ORTHO05D005336 5.8e-270 934.1 663 71.0
Psat5g251760 Pisum sativum HOM05D003993 ORTHO05D005336 2.2e-269 932.2 663 72.4
CsaV3_3G005470 Cucumis sativus L. HOM05D003993 ORTHO05D005336 3.7e-269 931.4 663 71.3
arahy.Tifrunner.gnm1.ann1.C7DQ5B Arachis hypogaea HOM05D003993 ORTHO05D005336 3.2e-268 928.3 668 70.1
Duzib170G0292 Durio zibethinus HOM05D003993 ORTHO05D005336 4.1e-268 927.9 718 66.4
Lj3g0011163 Lotus japonicus HOM05D003993 ORTHO05D005336 5.4e-268 927.5 665 72.0
Atru.chr2.3206 Acer truncatum HOM05D003993 ORTHO05D005336 2.0e-267 925.6 666 70.1
arahy.Tifrunner.gnm1.ann1.YETR49 Arachis hypogaea HOM05D003993 ORTHO05D005336 7.8e-267 923.7 668 69.8
COL.COLO4_09564 Corchorus olitorius HOM05D003993 ORTHO05D005336 7.8e-267 923.7 645 74.3
Sed0012816 Sechium edule HOM05D003993 ORTHO05D005336 1.3e-266 922.9 664 70.8
Glyma.12G135700 Glycine max HOM05D003993 ORTHO05D005336 1.1e-265 919.8 663 69.1
Lalb_Chr14g0366101 Lupinus albus HOM05D003993 ORTHO05D005336 2.5e-265 918.7 664 69.0
Aqoxy4G02086 Aquilegia oxysepala HOM05D003993 ORTHO05D005336 1.8e-263 912.5 663 71.5
GSVIVG01014604001 Vitis vinifera HOM05D003993 ORTHO05D005336 3.1e-263 911.8 663 71.5
Cc05_g13220 Coffea canephora HOM05D003993 ORTHO05D005336 6.8e-263 910.6 660 70.6
THA.LOC104817894 Tarenaya hassleriana HOM05D003993 ORTHO05D005336 6.8e-263 910.6 663 70.3
Migut.H01858 Erythranthe guttata HOM05D003993 ORTHO05D005336 1.2e-262 909.8 664 71.4
arahy.Tifrunner.gnm1.ann1.M0TH05 Arachis hypogaea HOM05D003993 ORTHO05D005336 2.6e-262 908.7 669 67.9
HanXRQChr11g0332991 Helianthus annuus HOM05D003993 ORTHO05D005336 2.9e-261 905.2 665 68.7
CARHR096540 Cardamine hirsuta HOM05D003993 ORTHO05D005336 1.4e-260 902.9 663 68.8
Oeu032440.1 Olea europaea HOM05D003993 ORTHO05D005336 1.7e-258 896.0 664 70.9
BcaB04g20636 Brassica carinata HOM05D003993 ORTHO05D005336 3.0e-258 895.2 663 68.3
BraA01t03515Z Brassica rapa HOM05D003993 ORTHO05D005336 3.0e-258 895.2 663 68.0
ECA236G0263 Erigeron canadensis HOM05D003993 ORTHO05D005336 3.9e-258 894.8 663 67.9
Lj8C165T11 Lonicera japonica HOM05D003993 ORTHO05D005336 8.6e-258 893.6 682 68.0
AT3G20720 Arabidopsis thaliana HOM05D003993 ORTHO05D005336 2.5e-257 892.1 663 68.0
A01p34110 Brassica napus HOM05D003993 ORTHO05D005336 2.5e-257 892.1 663 68.2
C01p43520 Brassica napus HOM05D003993 ORTHO05D005336 3.3e-257 891.7 663 67.9
Carub.0003s2068 Capsella rubella HOM05D003993 ORTHO05D005336 5.6e-257 891.0 663 67.9
Solyc07g064080.4 Solanum lycopersicum HOM05D003993 ORTHO05D005336 7.3e-257 890.6 664 69.1
BolC1t04312H Brassica oleracea HOM05D003993 ORTHO05D005336 1.6e-256 889.4 663 67.7
Gorai.009G427300 Gossypium raimondii HOM05D003993 ORTHO05D005336 1.6e-256 889.4 663 67.4
Psat7g122440 Pisum sativum HOM05D003993 ORTHO05D005336 1.6e-256 889.4 666 67.6
EL10Ac4g07982 Beta vulgaris HOM05D003993 ORTHO05D005336 2.1e-256 889.0 663 69.5
Sopen07g032220 Solanum pennellii HOM05D003993 ORTHO05D005336 3.6e-256 888.3 664 68.8
Gohir.D05G365000 Gossypium hirsutum HOM05D003993 ORTHO05D005336 8.1e-256 887.1 663 67.1
BcaC09g49013 Brassica carinata HOM05D003993 ORTHO05D005336 1.1e-255 886.7 663 68.0
Sp3g18740 Schrenkiella parvula HOM05D003993 ORTHO05D005336 1.4e-255 886.3 663 67.7
AL3G34640 Arabidopsis lyrata HOM05D003993 ORTHO05D005336 1.5e-254 882.9 663 67.9
Lsat_1_v5_gn_7_108360 Lactuca sativa HOM05D003993 ORTHO05D005336 1.7e-253 879.4 663 67.7
ATR0073G006 Amborella trichopoda HOM05D003993 ORTHO05D005336 3.2e-252 875.2 664 66.3
DCAR_010016 Daucus carota HOM05D003993 ORTHO05D005336 3.2e-252 875.2 660 70.6
AUR62015640 Chenopodium quinoa HOM05D003993 ORTHO05D005336 1.7e-250 869.4 685 66.9
SalBow7G3755 Salvia bowleyana HOM05D003993 ORTHO05D005336 5.1e-250 867.8 701 67.2
Nitab4.5_0000397g0110 Nicotiana tabacum HOM05D003993 ORTHO05D005336 4.4e-246 854.7 741 63.2
Peaxi162Scf01086g00149 Petunia axillaris HOM05D003993 ORTHO05D005336 1.9e-244 849.4 664 67.0
HPP92_011131 Vanilla planifolia HOM05D003993 ORTHO05D005336 4.6e-243 844.7 664 65.8
Cpa.g.sc97.71 Carica papaya HOM05D003993 ORTHO05D005336 6.0e-243 844.3 648 67.0
Nitab4.5_0009192g0040 Nicotiana tabacum HOM05D003993 ORTHO05D005336 2.5e-241 839.0 661 67.3
Aa31LG8G7470 Aethionema arabicum HOM05D003993 ORTHO05D005336 6.2e-240 834.3 740 59.9
Os04g0628600 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 4.9e-237 824.7 663 63.2
Ah.06g183050 Amaranthus hybridus HOM05D003993 ORTHO05D005336 1.0e-234 817.0 666 62.5
Thhalv10019934m.g Eutrema salsugineum HOM05D003993 ORTHO05D005336 3.0e-234 815.5 616 67.2
CAN.G337.149 Capsicum annuum HOM05D003993 ORTHO05D005336 3.9e-234 815.1 629 66.6
SEGI_25073 Sequoiadendron giganteum HOM05D003993 ORTHO05D005336 7.4e-233 810.8 666 62.0
MBI18_g30688_MAGBIO Magnolia biondii HOM05D003993 ORTHO05D005336 1.2e-230 803.5 543 70.5
SGA_v2.0_scaffold320G48573 Striga asiatica HOM05D003993 ORTHO05D005336 5.5e-228 794.7 678 61.4
Phvul.011G140701 Phaseolus vulgaris HOM05D003993 ORTHO05D005336 9.3e-228 793.9 593 66.9
Medtr4g081300 Medicago truncatula HOM05D003993 ORTHO05D005336 3.3e-225 785.4 576 66.7
arahy.Tifrunner.gnm1.ann1.D8T6NU Arachis hypogaea HOM05D003993 ORTHO05D005336 2.4e-223 779.2 548 69.7
Gohir.A04G022400 Gossypium hirsutum HOM05D003993 ORTHO05D005336 2.4e-223 779.2 597 65.2
Sc16g0006470 Simmondsia chinensis HOM05D003993 ORTHO05D005336 4.8e-208 728.4 545 66.6
ECA246G2094 Erigeron canadensis HOM05D003993 ORTHO05D005336 1.1e-201 707.2 631 57.2
Mapoly0007s0002 Marchantia polymorpha HOM05D003993 ORTHO05D005336 1.7e-197 693.3 663 54.3
TPR.G36724 Trifolium pratense HOM05D003993 ORTHO05D005336 2.2e-197 693.0 663 57.0
Pp3c10_1850 Physcomitrium patens HOM05D003993 ORTHO05D005336 2.7e-195 686.0 667 53.7
Duzib213G0987 Durio zibethinus HOM05D003993 ORTHO05D005336 4.7e-195 685.3 646 59.0
SMO143G0035 Selaginella moellendorffii HOM05D003993 ORTHO05D005336 3.1e-191 672.5 663 53.8
arahy.Tifrunner.gnm1.ann1.P0I1SB Arachis hypogaea HOM05D003993 ORTHO05D005336 2.5e-188 662.9 476 68.1
AagrBONN_evm.TU.Sc2ySwM_344.1679 Anthoceros agrestis HOM05D003993 ORTHO05D005336 2.0e-185 653.3 640 54.1
HanXRQChr08g0234101 Helianthus annuus HOM05D003993 ORTHO05D005336 9.2e-159 564.7 498 59.6
CBR_g39891 Chara braunii HOM05D003993 ORTHO05D005336 3.5e-150 536.2 664 44.0
Nn1g06997 Nelumbo nucifera HOM05D003993 ORTHO05D005336 1.7e-141 507.3 394 71.6
unitig_26.g9969 Utricularia gibba HOM05D003993 ORTHO05D005336 4.3e-140 502.7 644 46.3
Pp3c15_5100 Physcomitrium patens HOM05D003993 ORTHO05D005336 1.4e-135 487.6 672 40.9
Lsat_1_v5_gn_5_5700 Lactuca sativa HOM05D003993 ORTHO05D005336 7.8e-126 455.3 492 50.8
A05p28100 Brassica napus HOM05D003993 ORTHO05D005336 6.5e-104 382.5 603 42.6
Zm00001eb431410 Zea mays HOM05D003993 ORTHO05D005336 2.7e-102 377.1 294 62.2
BraA05t21692Z Brassica rapa HOM05D003993 ORTHO05D005336 1.9e-100 370.9 614 40.9
SHI31871 Sapria himalayana HOM05D003993 ORTHO05D005336 1.5e-92 344.7 312 56.1
AUR62020558 Chenopodium quinoa HOM05D003993 ORTHO05D005336 3.2e-79 300.4 229 62.0
QL04p049176 Quercus lobata HOM05D003993 ORTHO05D005336 4.7e-78 296.6 203 74.4
VMungo1127G1901 Vigna mungo HOM05D003993 ORTHO05D005336 1.8e-77 294.7 209 68.9
VMungo1127G0362 Vigna mungo HOM05D003993 ORTHO05D005336 2.2e-72 277.7 273 57.5
QL05p071299 Quercus lobata HOM05D003993 ORTHO05D005336 2.7e-70 270.8 182 75.3
PGSC0003DMG401019261 Solanum tuberosum HOM05D003993 ORTHO05D005336 1.2e-60 238.8 196 64.8
BcaC05g28293 Brassica carinata HOM05D003993 ORTHO05D005336 2.2e-59 234.6 301 48.8
arahy.Tifrunner.gnm1.ann1.9VYU83 Arachis hypogaea HOM05D003993 ORTHO05D005336 3.3e-55 220.7 419 39.4
C05p43510 Brassica napus HOM05D003993 ORTHO05D005336 2.4e-50 204.5 273 46.2
SHI31872 Sapria himalayana HOM05D003993 ORTHO05D005336 9.2e-50 202.6 174 60.3
arahy.Tifrunner.gnm1.ann1.R5QT9H Arachis hypogaea HOM05D003993 ORTHO05D005336 3.3e-47 194.1 589 30.2
BolC5t33074H Brassica oleracea HOM05D003993 ORTHO05D005336 8.0e-46 189.5 302 40.4
QL11p046973 Quercus lobata HOM05D003993 ORTHO05D005336 5.8e-44 183.3 138 70.3
arahy.Tifrunner.gnm1.ann1.UE9C9H Arachis hypogaea HOM05D003993 ORTHO05D005336 9.2e-42 176.0 161 59.6
HanXRQChr17g0562031 Helianthus annuus HOM05D003993 ORTHO05D005336 1.0e-40 172.6 165 58.8
CDE05G2526 Ceratophyllum demersum HOM05D003993 ORTHO05D005336 1.5e-36 158.7 97 85.6
BcaB06g26142 Brassica carinata HOM05D003993 ORTHO05D005336 9.8e-36 156.0 112 65.2
BcaB06g26141 Brassica carinata HOM05D003993 ORTHO05D005336 5.2e-29 133.7 132 54.5
SHI50190 Sapria himalayana HOM05D003993 ORTHO05D005336 8.9e-29 132.9 132 56.1
MBI18_g40553_MAGBIO Magnolia biondii HOM05D003993 ORTHO05D005336 1.3e-24 119.0 66 89.4
VMungo1127G0084 Vigna mungo HOM05D003993 ORTHO05D005336 1.6e-22 112.1 68 79.4
Lsat_1_v5_gn_4_127040 Lactuca sativa HOM05D003993 ORTHO05D002051 2.4e-21 108.2 87 57.5
FAN21G2881 Fragaria x ananassa HOM05D003993 ORTHO05D005336 8.9e-21 106.3 50 100.0
Os06g0731950 Oryza sativa ssp. japonica HOM05D003993 ORTHO05D005336 5.1e-16 90.5 77 53.2
Hund02134 Selenicereus undatus HOM05D003993 ORTHO05D005336 5.6e-15 87.0 50 76.0


User provided reference genes

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