Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 4.0e-273 944.1 466 100.0
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 9.3e-262 906.4 480 94.6
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 3.3e-251 871.3 446 97.1
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 1.0e-236 823.2 446 91.7
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 1.1e-209 733.4 451 79.4
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 3.1e-209 731.9 452 79.6
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 4.7e-205 718.0 451 76.9
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 1.4e-193 679.9 451 75.4
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 6.8e-188 661.0 449 74.6
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 1.3e-186 656.8 447 72.5
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 1.3e-186 656.8 451 72.3
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 8.3e-186 654.1 451 72.3
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 4.6e-184 648.3 449 72.8
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 1.1e-182 643.7 451 71.4
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 5.6e-182 641.3 442 71.7
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.2e-181 640.2 442 71.7
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 4.0e-180 635.2 444 70.7
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 1.2e-179 633.6 453 68.9
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 8.3e-178 627.5 451 69.0
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 8.3e-178 627.5 462 68.2
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 8.3e-178 627.5 450 68.4
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 1.9e-177 626.3 452 68.8
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 2.4e-177 625.9 441 71.4
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 3.5e-176 622.1 451 69.2
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 1.0e-175 620.5 442 71.3
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 3.0e-175 619.0 437 69.1
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 5.1e-175 618.2 444 69.1
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 6.6e-175 617.8 452 67.5
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 8.6e-175 617.5 446 67.7
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 8.6e-175 617.5 452 67.5
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 8.6e-175 617.5 442 68.1
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 1.2e-173 613.6 451 67.6
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 2.1e-173 612.8 440 69.5
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 3.6e-173 612.1 445 67.9
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 1.4e-172 610.1 447 68.9
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 1.4e-172 610.1 433 70.2
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 2.3e-172 609.4 442 69.5
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 8.9e-172 607.4 447 67.6
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 4.4e-171 605.1 447 67.3
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 7.6e-171 604.4 451 67.2
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 9.9e-171 604.0 447 68.9
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 2.9e-170 602.4 435 68.7
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 3.7e-170 602.1 447 68.5
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 6.4e-170 601.3 447 68.9
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 8.3e-170 600.9 436 68.1
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 1.1e-169 600.5 435 68.7
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 2.4e-169 599.4 437 67.7
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 3.2e-169 599.0 447 66.9
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 4.1e-169 598.6 446 67.5
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 4.1e-169 598.6 446 67.5
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 1.2e-168 597.0 439 66.7
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 2.7e-168 595.9 448 67.9
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 3.5e-168 595.5 447 68.2
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 4.6e-168 595.1 440 68.6
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 4.6e-168 595.1 443 68.4
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 7.8e-168 594.3 447 68.2
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 2.3e-167 592.8 415 70.8
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 3.0e-167 592.4 449 66.6
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 3.0e-167 592.4 437 68.0
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 3.9e-167 592.0 449 65.9
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 3.3e-166 589.0 416 71.4
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 3.3e-166 589.0 438 65.5
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 6.2e-165 584.7 438 64.2
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 8.1e-165 584.3 442 65.8
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 1.1e-164 583.9 447 63.3
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 1.8e-164 583.2 440 65.5
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 5.2e-164 581.6 446 66.1
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 6.8e-164 581.3 445 65.8
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 8.9e-164 580.9 439 65.4
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 5.8e-163 578.2 442 66.5
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 2.2e-162 576.2 415 67.2
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 8.4e-162 574.3 432 67.4
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 3.2e-161 572.4 410 70.5
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 7.8e-160 567.8 417 65.9
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 3.9e-159 565.5 432 65.0
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 6.6e-159 564.7 432 64.8
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 1.6e-157 560.1 434 64.3
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 1.1e-156 557.4 464 62.5
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 3.1e-156 555.8 430 64.4
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 1.3e-154 550.4 436 63.3
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 2.2e-154 549.7 399 69.2
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 4.9e-154 548.5 427 63.5
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 4.2e-153 545.4 463 61.1
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 1.6e-152 543.5 448 62.9
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 2.7e-152 542.7 441 63.5
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 2.7e-152 542.7 430 62.3
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 6.0e-152 541.6 441 62.8
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 1.0e-151 540.8 435 63.9
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 1.3e-151 540.4 436 65.1
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 2.3e-151 539.7 447 63.3
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 1.9e-150 536.6 454 60.8
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 5.6e-150 535.0 447 62.2
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 5.6e-150 535.0 370 70.0
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 2.1e-149 533.1 451 62.3
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.6e-149 532.3 436 64.4
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.6e-149 532.3 436 64.4
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 4.8e-149 531.9 439 61.0
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 6.9e-148 528.1 451 61.9
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 7.6e-147 524.6 434 63.8
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.3e-146 523.9 451 61.4
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 2.2e-146 523.1 444 61.9
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 2.9e-146 522.7 435 60.7
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 3.8e-146 522.3 431 63.3
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 3.8e-146 522.3 444 62.4
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 4.9e-146 521.9 434 63.1
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 6.4e-146 521.5 443 61.9
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 8.4e-146 521.2 444 62.2
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 2.4e-145 519.6 444 62.2
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 2.4e-145 519.6 444 62.2
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 9.3e-145 517.7 345 73.3
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.6e-144 516.9 350 70.6
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 6.7e-143 511.5 450 60.7
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 6.7e-143 511.5 350 69.4
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 1.1e-140 504.2 446 59.6
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 1.4e-140 503.8 418 60.8
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 4.0e-140 502.3 364 68.1
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 3.4e-139 499.2 442 56.3
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 1.0e-138 497.7 441 56.5
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 1.7e-138 496.9 388 62.9
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 3.8e-138 495.7 343 68.5
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 1.1e-137 494.2 442 60.4
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 1.9e-137 493.4 442 56.1
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 2.9e-130 469.5 359 65.5
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 9.3e-129 464.5 319 70.5
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 3.7e-117 426.0 446 54.5
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 5.3e-116 422.2 331 62.2
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 7.7e-115 418.3 360 61.1
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 4.8e-109 399.1 384 56.8
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 9.7e-102 374.8 316 61.1
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 9.7e-102 374.8 316 61.1
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 8.0e-96 355.1 389 49.1
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.1e-92 344.7 429 46.4
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 9.5e-81 305.1 229 65.9
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 1.7e-77 294.3 257 62.6
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 1.2e-70 271.6 187 68.4
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.7e-66 257.7 373 42.9
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 3.1e-63 246.9 249 55.4
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 4.6e-59 233.0 163 70.6
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 3.0e-58 230.3 176 64.2
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 4.4e-38 163.3 149 56.4
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.1e-36 158.7 107 69.2
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 3.1e-31 140.6 172 48.3
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 9.9e-30 135.6 162 54.3
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 2.4e-28 131.0 111 63.1
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 7.4e-25 119.4 99 55.6
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 1.8e-18 98.2 52 86.5
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 3.7e-08 63.9 54 53.7


User provided reference genes

Program Settings