Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G3321 Fragaria x ananassa HOM05D007268 ORTHO05D009152 6.0e-52 207.2 104 100.0
FvH4_3g05282 Fragaria vesca HOM05D007268 ORTHO05D009152 5.6e-50 200.7 101 99.0
FAN16G0810 Fragaria x ananassa HOM05D007268 ORTHO05D009152 9.6e-50 199.9 101 99.0
FAN25G0109 Fragaria x ananassa HOM05D007268 ORTHO05D009152 2.1e-49 198.7 101 97.0
RcHm_v2.0_Chr5g0014441 Rosa chinensis HOM05D007268 ORTHO05D009152 1.7e-43 179.1 102 90.2
Prupe.4G083100 Prunus persica HOM05D007268 ORTHO05D009152 3.0e-35 151.8 101 75.2
Duzib235G0597 Durio zibethinus HOM05D007268 ORTHO05D009152 1.1e-34 149.8 101 75.2
Duzib160G0929 Durio zibethinus HOM05D007268 ORTHO05D009152 1.5e-34 149.4 101 75.2
Gohir.A10G042300 Gossypium hirsutum HOM05D007268 ORTHO05D009152 2.5e-34 148.7 101 72.3
Gohir.D10G043200 Gossypium hirsutum HOM05D007268 ORTHO05D009152 2.5e-34 148.7 101 72.3
Gorai.011G045800 Gossypium raimondii HOM05D007268 ORTHO05D009152 2.5e-34 148.7 101 72.3
Cfa000925 Carpinus fangiana HOM05D007268 ORTHO05D009152 1.6e-33 146.0 101 72.3
QL05p055849 Quercus lobata HOM05D007268 ORTHO05D009152 8.1e-33 143.7 101 72.3
MD05G1281500 Malus domestica HOM05D007268 ORTHO05D009152 1.1e-32 143.3 101 72.3
Thecc.06G148000 Theobroma cacao HOM05D007268 ORTHO05D009152 1.1e-32 143.3 101 72.3
CiPaw.09G121900 Carya illinoinensis HOM05D007268 ORTHO05D009152 1.3e-30 136.3 101 68.3
Manes.17G072200 Manihot esculenta HOM05D007268 ORTHO05D009152 1.7e-30 136.0 96 69.8
Sed0026056 Sechium edule HOM05D007268 ORTHO05D009152 2.2e-30 135.6 101 66.3
Eucgr.E02425 Eucalyptus grandis HOM05D007268 ORTHO05D009152 1.4e-29 132.9 101 68.3
TWI53G0467 Tripterygium wilfordii HOM05D007268 ORTHO05D009152 1.4e-29 132.9 91 73.6
CsaV3_1G004630 Cucumis sativus L. HOM05D007268 ORTHO05D009152 2.5e-29 132.1 101 65.3
PGR031G1097 Punica granatum HOM05D007268 ORTHO05D009152 3.2e-29 131.7 88 72.7
Psat1g188600 Pisum sativum HOM05D007268 ORTHO05D009152 4.2e-29 131.3 101 67.3
Atru.chr10.1171 Acer truncatum HOM05D007268 ORTHO05D009152 7.1e-29 130.6 101 69.3
CSS0021934 Camellia sinensis var. sinensis HOM05D007268 ORTHO05D009152 9.3e-29 130.2 100 71.0
BcaC06g30591 Brassica carinata HOM05D007268 ORTHO05D009152 1.2e-28 129.8 101 64.4
BcaC06g30594 Brassica carinata HOM05D007268 ORTHO05D009152 1.2e-28 129.8 91 70.3
BcaNung00009 Brassica carinata HOM05D007268 ORTHO05D009152 1.2e-28 129.8 91 70.3
A03p51230 Brassica napus HOM05D007268 ORTHO05D009152 1.2e-28 129.8 101 64.4
Sabra15G0149200 Salix brachista HOM05D007268 ORTHO05D009152 1.2e-28 129.8 81 74.1
Actinidia32339 Actinidia chinensis HOM05D007268 ORTHO05D009152 1.6e-28 129.4 100 68.0
BraA03t14206Z Brassica rapa HOM05D007268 ORTHO05D009152 1.6e-28 129.4 101 65.3
Ca_00530_v3 Cicer arietinum L. HOM05D007268 ORTHO05D009152 1.6e-28 129.4 101 68.3
ClCG03G006700 Citrullus lanatus HOM05D007268 ORTHO05D009152 1.6e-28 129.4 101 64.4
BcaNung02699 Brassica carinata HOM05D007268 ORTHO05D009152 2.1e-28 129.0 101 64.4
C07p49660 Brassica napus HOM05D007268 ORTHO05D009152 2.1e-28 129.0 101 64.4
BolC7t45467H Brassica oleracea HOM05D007268 ORTHO05D009152 2.1e-28 129.0 101 64.4
Ciclev10017240m.g Citrus clementina HOM05D007268 ORTHO05D009152 2.7e-28 128.6 101 63.4
AL7G36000 Arabidopsis lyrata HOM05D007268 ORTHO05D009152 3.5e-28 128.3 101 65.3
Thhalv10026609m.g Eutrema salsugineum HOM05D007268 ORTHO05D009152 3.5e-28 128.3 101 65.3
CSS0030281 Camellia sinensis var. sinensis HOM05D007268 ORTHO05D009152 4.6e-28 127.9 100 69.0
MBI02_g20985_MAGBIO Magnolia biondii HOM05D007268 ORTHO05D009152 4.6e-28 127.9 86 72.1
Potri.015G138100 Populus trichocarpa HOM05D007268 ORTHO05D009152 4.6e-28 127.9 81 72.8
Sp7g15690 Schrenkiella parvula HOM05D007268 ORTHO05D009152 6.0e-28 127.5 101 66.3
TPR.G26254 Trifolium pratense HOM05D007268 ORTHO05D009152 6.0e-28 127.5 101 65.3
AT4G18372 Arabidopsis thaliana HOM05D007268 ORTHO05D009152 7.9e-28 127.1 101 64.4
A01p10290 Brassica napus HOM05D007268 ORTHO05D009152 7.9e-28 127.1 85 70.6
BraA01t00976Z Brassica rapa HOM05D007268 ORTHO05D009152 7.9e-28 127.1 85 70.6
Medtr2g019100 Medicago truncatula HOM05D007268 ORTHO05D009152 7.9e-28 127.1 101 64.4
Carub.0007s2291 Capsella rubella HOM05D007268 ORTHO05D009152 1.0e-27 126.7 87 71.3
CARHR225150 Cardamine hirsuta HOM05D007268 ORTHO05D009152 1.0e-27 126.7 101 62.4
CiPaw.10G090400 Carya illinoinensis HOM05D007268 ORTHO05D009152 1.0e-27 126.7 88 73.9
BcaC09g51527 Brassica carinata HOM05D007268 ORTHO05D009152 1.3e-27 126.3 70 81.4
C01p12240 Brassica napus HOM05D007268 ORTHO05D009152 1.8e-27 125.9 68 83.8
BolC1t01200H Brassica oleracea HOM05D007268 ORTHO05D009152 1.8e-27 125.9 68 83.8
Dinv32234 Davidia involucrata HOM05D007268 ORTHO05D009152 2.3e-27 125.6 91 70.3
THA.LOC104798395 Tarenaya hassleriana HOM05D007268 ORTHO05D009152 2.3e-27 125.6 88 67.0
Atru.chr4.1816 Acer truncatum HOM05D007268 ORTHO05D009152 3.9e-27 124.8 101 67.3
Aqoxy4G02868 Aquilegia oxysepala HOM05D007268 ORTHO05D009152 3.9e-27 124.8 82 70.7
Glyma.13G219500 Glycine max HOM05D007268 ORTHO05D009152 5.1e-27 124.4 71 81.7
Phvul.006G166200 Phaseolus vulgaris HOM05D007268 ORTHO05D009152 5.1e-27 124.4 71 81.7
Lalb_Chr18g0055321 Lupinus albus HOM05D007268 ORTHO05D009152 8.7e-27 123.6 80 75.0
Nn3g20236 Nelumbo nucifera HOM05D007268 ORTHO05D009152 8.7e-27 123.6 77 77.9
Aa31LG6G1080 Aethionema arabicum HOM05D007268 ORTHO05D009152 1.1e-26 123.2 81 69.1
CANSAT21G2169 Cannabis sativa HOM05D007268 ORTHO05D009152 1.1e-26 123.2 70 84.3
Hund21552 Selenicereus undatus HOM05D007268 ORTHO05D009152 7.4e-26 120.6 94 66.0
Solyc08g048540.2 Solanum lycopersicum HOM05D007268 ORTHO05D009152 7.4e-26 120.6 71 80.3
Sopen08g010950 Solanum pennellii HOM05D007268 ORTHO05D009152 7.4e-26 120.6 71 80.3
vmacro03337 Vaccinium macrocarpon HOM05D007268 ORTHO05D009152 9.6e-26 120.2 84 69.0
Rhsim13G0115400 Rhododendron simsii HOM05D007268 ORTHO05D009152 1.6e-25 119.4 100 65.0
PGSC0003DMG400029871 Solanum tuberosum HOM05D007268 ORTHO05D009152 3.7e-25 118.2 71 78.9
CAN.G500.67 Capsicum annuum HOM05D007268 ORTHO05D009152 4.8e-25 117.9 71 78.9
CAN.G42.16 Capsicum annuum HOM05D007268 ORTHO05D009152 8.2e-25 117.1 99 61.6
Lsat_1_v5_gn_7_27661 Lactuca sativa HOM05D007268 ORTHO05D009152 1.1e-24 116.7 68 77.9
HPP92_004157 Vanilla planifolia HOM05D007268 ORTHO05D009152 1.1e-24 116.7 104 58.7
AUR62006739 Chenopodium quinoa HOM05D007268 ORTHO05D009152 1.4e-24 116.3 100 61.0
DCAR_003898 Daucus carota HOM05D007268 ORTHO05D009152 1.8e-24 115.9 87 63.2
Oeu030940.1 Olea europaea HOM05D007268 ORTHO05D009152 1.8e-24 115.9 87 66.7
PSO541G1787 Papaver somniferum HOM05D007268 ORTHO05D009152 1.8e-24 115.9 80 70.0
Sc24g0001710 Simmondsia chinensis HOM05D007268 ORTHO05D009152 2.4e-24 115.5 69 76.8
Ah.04g158630 Amaranthus hybridus HOM05D007268 ORTHO05D009152 3.1e-24 115.2 69 76.8
SGA_v2.0_scaffold1G00193 Striga asiatica HOM05D007268 ORTHO05D009152 2.0e-23 112.5 80 65.0
unitig_92.g28163 Utricularia gibba HOM05D007268 ORTHO05D009152 1.0e-22 110.2 98 58.2
Zm00001eb273860 Zea mays HOM05D007268 ORTHO05D009152 1.3e-22 109.8 98 56.1
ECA236G4633 Erigeron canadensis HOM05D007268 ORTHO05D009152 1.7e-22 109.4 68 72.1
Migut.M00895 Erythranthe guttata HOM05D007268 ORTHO05D009152 1.7e-22 109.4 96 59.4
ATR0618G449 Amborella trichopoda HOM05D007268 ORTHO05D009152 5.0e-22 107.8 71 64.8
GSVIVG01035542001 Vitis vinifera HOM05D007268 ORTHO05D009152 5.0e-22 107.8 57 86.0
Zm00001eb224700 Zea mays HOM05D007268 ORTHO05D009152 8.4e-22 107.1 71 69.0
MSTRG.7499 Avicennia marina HOM05D007268 ORTHO05D009152 1.4e-21 106.3 88 58.0
MBI02_g43299_MAGBIO Magnolia biondii HOM05D007268 ORTHO05D009152 1.4e-21 106.3 57 84.2
unitig_37.g12097 Utricularia gibba HOM05D007268 ORTHO05D009152 5.5e-21 104.4 81 61.7
Os06g0677600 Oryza sativa ssp. japonica HOM05D007268 ORTHO05D009152 3.5e-20 101.7 97 51.5
arahy.Tifrunner.gnm1.ann1.H0S66A Arachis hypogaea HOM05D007268 ORTHO05D009152 4.6e-20 101.3 71 73.2
SalBow8G1886 Salvia bowleyana HOM05D007268 ORTHO05D009152 6.1e-20 100.9 57 80.7
Solyc08g048520.1 Solanum lycopersicum HOM05D007268 ORTHO05D009152 7.9e-20 100.5 71 67.6
HanXRQChr04g0115721 Helianthus annuus HOM05D007268 ORTHO05D009152 3.0e-19 98.6 57 78.9
Cc09_g08780 Coffea canephora HOM05D007268 ORTHO05D009152 6.7e-19 97.4 57 80.7
EL10Ac4g09469 Beta vulgaris HOM05D007268 ORTHO05D009152 3.3e-18 95.1 58 75.9
Pp3c2_29020 Physcomitrium patens HOM05D007268 ORTHO05D009152 5.9e-15 84.3 78 48.7
Mapoly0012s0147 Marchantia polymorpha HOM05D007268 ORTHO05D009152 2.2e-14 82.4 110 41.8
SEGI_36221 Sequoiadendron giganteum HOM05D007268 ORTHO05D009152 3.2e-13 78.6 72 52.8
SMO358G0115 Selaginella moellendorffii HOM05D007268 ORTHO05D009152 4.2e-13 78.2 77 46.8
CBR_g29441 Chara braunii HOM05D007268 ORTHO05D009152 2.3e-11 72.4 105 40.0
SHI24845 Sapria himalayana HOM05D007268 ORTHO05D009152 4.3e-10 68.2 57 56.1
PRCOL_00005812 Prasinoderma coloniale HOM05D007268 ORTHO05D009152 2.2e-09 65.9 68 50.0
Nitab4.5_0005488g0010 Nicotiana tabacum HOM05D007268 ORTHO05D009152 6.9e-08 60.8 36 80.6


User provided reference genes

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