Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G3309 Fragaria x ananassa HOM05D007829 ORTHO05D009903 8.8e-162 573.5 286 100.0
FAN25G0937 Fragaria x ananassa HOM05D007829 ORTHO05D009903 2.0e-142 509.2 298 87.6
FvH4_3g00940 Fragaria vesca HOM05D007829 ORTHO05D009903 2.5e-140 502.3 280 89.3
RcHm_v2.0_Chr5g0001461 Rosa chinensis HOM05D007829 ORTHO05D009903 2.5e-108 396.0 265 75.8
Prupe.4G010000 Prunus persica HOM05D007829 ORTHO05D009903 1.3e-59 234.2 276 49.3
MD10G1332100 Malus domestica HOM05D007829 ORTHO05D009903 6.9e-58 228.4 238 52.9
CiPaw.10G078200 Carya illinoinensis HOM05D007829 ORTHO05D009903 2.7e-46 189.9 270 39.6
Potri.016G013200 Populus trichocarpa HOM05D007829 ORTHO05D009903 3.3e-44 183.0 260 40.0
Actinidia39272 Actinidia chinensis HOM05D007829 ORTHO05D009903 2.2e-43 180.3 175 49.1
Rhsim02G0099400 Rhododendron simsii HOM05D007829 ORTHO05D009903 1.0e-40 171.4 201 42.8
Nn1g07397 Nelumbo nucifera HOM05D007829 ORTHO05D009903 2.2e-40 170.2 226 40.3
Sabra16G0002200 Salix brachista HOM05D007829 ORTHO05D009903 3.8e-40 169.5 284 37.3
Gohir.D10G008900 Gossypium hirsutum HOM05D007829 ORTHO05D009903 8.5e-40 168.3 218 40.4
Manes.08G071000 Manihot esculenta HOM05D007829 ORTHO05D009903 8.5e-40 168.3 250 39.6
Sabra16G0015800 Salix brachista HOM05D007829 ORTHO05D009903 1.9e-39 167.2 269 38.7
Hma1.2p1_0657F.1_g197120 Hydrangea macrophylla HOM05D007829 ORTHO05D009903 2.5e-39 166.8 227 41.9
Thecc.06G233800 Theobroma cacao HOM05D007829 ORTHO05D009903 2.5e-39 166.8 204 44.6
Ciclev10018278m.g Citrus clementina HOM05D007829 ORTHO05D009903 4.2e-39 166.0 149 56.4
Gohir.A10G009200 Gossypium hirsutum HOM05D007829 ORTHO05D009903 9.4e-39 164.9 179 43.0
Gorai.011G009700 Gossypium raimondii HOM05D007829 ORTHO05D009903 9.4e-39 164.9 179 43.6
TAR627G0564 Trochodendron aralioides HOM05D007829 ORTHO05D009903 9.4e-39 164.9 236 40.7
COL.COLO4_31889 Corchorus olitorius HOM05D007829 ORTHO05D009903 1.2e-38 164.5 210 41.0
Cpa.g.sc75.113 Carica papaya HOM05D007829 ORTHO05D009903 2.7e-38 163.3 190 42.1
TWI38G1785 Tripterygium wilfordii HOM05D007829 ORTHO05D009903 6.1e-38 162.2 268 37.3
CSS0014217 Camellia sinensis var. sinensis HOM05D007829 ORTHO05D009903 7.9e-38 161.8 203 43.3
Lj6g0010113 Lotus japonicus HOM05D007829 ORTHO05D009903 7.9e-38 161.8 258 38.8
Dinv07407 Davidia involucrata HOM05D007829 ORTHO05D009903 3.0e-37 159.8 225 40.0
TAR627G1193 Trochodendron aralioides HOM05D007829 ORTHO05D009903 2.0e-36 157.1 217 39.6
PSO675G8147 Papaver somniferum HOM05D007829 ORTHO05D009903 4.4e-36 156.0 262 36.3
CDE11G1237 Ceratophyllum demersum HOM05D007829 ORTHO05D009903 9.7e-36 154.8 217 38.7
Psat1g175960 Pisum sativum HOM05D007829 ORTHO05D009903 2.8e-35 153.3 262 38.5
PGR004G1136 Punica granatum HOM05D007829 ORTHO05D009903 3.7e-35 152.9 233 37.3
Aqoxy2G02687 Aquilegia oxysepala HOM05D007829 ORTHO05D009903 4.8e-35 152.5 168 39.9
Migut.M01399 Erythranthe guttata HOM05D007829 ORTHO05D009903 8.2e-35 151.8 239 36.0
Medtr2g025760 Medicago truncatula HOM05D007829 ORTHO05D009903 1.8e-34 150.6 257 36.2
Sc05g0009620 Simmondsia chinensis HOM05D007829 ORTHO05D009903 1.8e-34 150.6 226 35.8
arahy.Tifrunner.gnm1.ann1.G424KC Arachis hypogaea HOM05D007829 ORTHO05D009903 5.3e-34 149.1 187 43.3
Eucgr.D01411 Eucalyptus grandis HOM05D007829 ORTHO05D009903 2.0e-33 147.1 174 43.1
PSO541G5076 Papaver somniferum HOM05D007829 ORTHO05D009903 2.0e-33 147.1 152 45.4
Cc00_g34400 Coffea canephora HOM05D007829 ORTHO05D009903 1.0e-32 144.8 205 40.0
CARHR229280 Cardamine hirsuta HOM05D007829 ORTHO05D009903 1.3e-32 144.4 145 48.3
Solyc11g012300.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 2.9e-32 143.3 194 36.1
SGA_v2.0_scaffold4G01872 Striga asiatica HOM05D007829 ORTHO05D009903 5.0e-32 142.5 177 40.1
Phvul.006G143000 Phaseolus vulgaris HOM05D007829 ORTHO05D009903 1.1e-31 141.4 232 40.5
VMungo0540G1426 Vigna mungo HOM05D007829 ORTHO05D009903 1.1e-31 141.4 221 41.6
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 3.2e-31 139.8 139 48.2
Duzib235G0645 Durio zibethinus HOM05D007829 ORTHO05D009903 1.6e-30 137.5 127 49.6
A01p13730 Brassica napus HOM05D007829 ORTHO05D009903 2.3e-29 133.7 146 43.8
BcaC09g51100 Brassica carinata HOM05D007829 ORTHO05D009903 6.7e-29 132.1 141 44.7
Glyma.15G114900 Glycine max HOM05D007829 ORTHO05D009903 8.8e-29 131.7 182 41.2
BraA01t01318Z Brassica rapa HOM05D007829 ORTHO05D009903 1.2e-28 131.3 145 42.8
C01p16640 Brassica napus HOM05D007829 ORTHO05D009903 1.5e-28 131.0 143 44.1
Oeu002768.1 Olea europaea HOM05D007829 ORTHO05D009903 2.0e-28 130.6 170 40.6
Sopen11g007080 Solanum pennellii HOM05D007829 ORTHO05D009903 2.0e-28 130.6 143 41.3
THA.LOC104813576 Tarenaya hassleriana HOM05D007829 ORTHO05D009903 2.0e-28 130.6 171 36.8
BolC1t01611H Brassica oleracea HOM05D007829 ORTHO05D009903 3.3e-28 129.8 141 44.0
Glyma.09G010400 Glycine max HOM05D007829 ORTHO05D009903 4.4e-28 129.4 229 34.9
CANSAT56G1477 Cannabis sativa HOM05D007829 ORTHO05D009903 5.7e-28 129.0 203 39.9
PGSC0003DMG400013350 Solanum tuberosum HOM05D007829 ORTHO05D009903 5.7e-28 129.0 143 41.3
AT4G22370 Arabidopsis thaliana HOM05D007829 ORTHO05D009903 2.8e-27 126.7 166 41.0
QL05p069622 Quercus lobata HOM05D007829 ORTHO05D009903 2.4e-26 123.6 183 39.3
Sp7g20500 Schrenkiella parvula HOM05D007829 ORTHO05D009903 7.0e-26 122.1 155 41.9
TPR.G13103 Trifolium pratense HOM05D007829 ORTHO05D009903 9.1e-26 121.7 153 43.8
ATR0712G049 Amborella trichopoda HOM05D007829 ORTHO05D009903 5.9e-25 119.0 128 40.6
Carub.0007s1893 Capsella rubella HOM05D007829 ORTHO05D009903 6.5e-24 115.5 121 45.5
TAR629G0037 Trochodendron aralioides HOM05D007829 ORTHO05D009903 1.5e-23 114.4 97 46.4
Peaxi162Scf00352g00215 Petunia axillaris HOM05D007829 ORTHO05D009903 1.6e-22 110.9 124 41.9
Lalb_Chr15g0088001 Lupinus albus HOM05D007829 ORTHO05D009903 1.8e-21 107.5 185 35.7
Cfa000096 Carpinus fangiana HOM05D007829 ORTHO05D009903 5.2e-21 105.9 170 39.4
MBI19_g06149_MAGBIO Magnolia biondii HOM05D007829 ORTHO05D009903 1.2e-20 104.8 120 41.7
AL7G31240 Arabidopsis lyrata HOM05D007829 ORTHO05D009903 9.8e-20 101.7 93 50.5
Thhalv10027004m.g Eutrema salsugineum HOM05D007829 ORTHO05D009903 1.8e-18 97.4 118 39.8
SalBow8G1028 Salvia bowleyana HOM05D007829 ORTHO05D009903 2.4e-18 97.1 175 33.7
TPR.G18790 Trifolium pratense HOM05D007829 ORTHO05D009903 2.4e-18 97.1 171 36.3
ClCG01G021470 Citrullus lanatus HOM05D007829 ORTHO05D009903 5.4e-18 95.9 150 36.7
Sed0017863 Sechium edule HOM05D007829 ORTHO05D009903 1.2e-17 94.7 127 37.0
unitig_5.g30996 Utricularia gibba HOM05D000093 ORTHO05D001309 2.7e-17 93.6 171 32.2
Aa31LG6G4470 Aethionema arabicum HOM05D007829 ORTHO05D009903 2.2e-16 90.5 81 51.9
CsaV3_6G048490 Cucumis sativus L. HOM05D007829 ORTHO05D009903 1.5e-12 77.8 136 32.4
unitig_748.g7131 Utricularia gibba HOM05D007829 ORTHO05D009903 7.5e-12 75.5 104 39.4
CSS0032449 Camellia sinensis var. sinensis HOM05D002745 ORTHO05D002945 1.2e-09 68.2 117 31.6
Manes.01G058300 Manihot esculenta HOM05D002745 ORTHO05D002945 2.7e-09 67.0 118 29.7
Sabra01G0075300 Salix brachista HOM05D002745 ORTHO05D002945 3.5e-09 66.6 118 29.7
Sed0022750 Sechium edule HOM05D007829 ORTHO05D009903 3.5e-09 66.6 78 42.3
Thecc.03G284700 Theobroma cacao HOM05D002745 ORTHO05D002945 4.5e-09 66.2 120 29.2
ECA233G2193 Erigeron canadensis HOM05D002745 ORTHO05D002945 7.8e-09 65.5 122 27.9
Sp7g00520 Schrenkiella parvula HOM05D002745 ORTHO05D002945 7.8e-09 65.5 116 28.4
Duzib205G0538 Durio zibethinus HOM05D002745 ORTHO05D002945 1.3e-08 64.7 120 30.0
SEGI_16879 Sequoiadendron giganteum HOM05D002745 ORTHO05D002945 1.3e-08 64.7 146 28.8
Nn1g01627 Nelumbo nucifera HOM05D002745 ORTHO05D002945 2.9e-08 63.5 181 25.4
Sabra03G0093800 Salix brachista HOM05D002745 ORTHO05D002945 2.9e-08 63.5 112 30.4
AL7G47950 Arabidopsis lyrata HOM05D002745 ORTHO05D002945 3.8e-08 63.2 116 27.6
Potri.001G100500 Populus trichocarpa HOM05D002745 ORTHO05D002945 6.6e-08 62.4 123 28.5
Potri.003G131500 Populus trichocarpa HOM05D002745 ORTHO05D002945 6.6e-08 62.4 134 27.6
AT5G41470 Arabidopsis thaliana HOM05D002745 ORTHO05D002945 8.6e-08 62.0 116 26.7
Medtr5g010050 Medicago truncatula HOM05D002745 ORTHO05D002945 8.6e-08 62.0 131 29.8
Carub.0007s3403 Capsella rubella HOM05D002745 ORTHO05D002945 1.5e-07 61.2 116 26.7
Lsat_1_v5_gn_6_4781 Lactuca sativa HOM05D002745 ORTHO05D002945 1.5e-07 61.2 178 21.9
Migut.E01200 Erythranthe guttata HOM05D002745 ORTHO05D002945 1.9e-07 60.8 120 28.3
Atru.chr9.2137 Acer truncatum HOM05D002745 ORTHO05D002945 2.5e-07 60.5 181 25.4
SalBow8G0983 Salvia bowleyana HOM05D002745 ORTHO05D002945 4.3e-07 59.7 136 27.2
Eucgr.E00649 Eucalyptus grandis HOM05D002745 ORTHO05D002945 9.5e-07 58.5 152 23.0
FAN08G3121 Fragaria x ananassa HOM05D002745 ORTHO05D002945 1.2e-06 58.2 117 29.1
FvH4_5g03000 Fragaria vesca HOM05D002745 ORTHO05D002945 1.6e-06 57.8 117 29.1
Psat2g182960 Pisum sativum HOM05D002745 ORTHO05D002945 1.6e-06 57.8 210 24.3
THA.LOC104817848 Tarenaya hassleriana HOM05D002745 ORTHO05D002945 1.6e-06 57.8 129 25.6
ATR0661G383 Amborella trichopoda HOM05D002745 ORTHO05D002945 2.8e-06 57.0 103 28.2
Oeu049859.2 Olea europaea HOM05D002745 ORTHO05D002945 2.8e-06 57.0 113 27.4
Cpa.g.sc180.25 Carica papaya HOM05D002745 ORTHO05D002945 3.6e-06 56.6 118 25.4
Peaxi162Scf00074g01837 Petunia axillaris HOM05D002745 ORTHO05D002945 4.7e-06 56.2 116 25.0
Solyc11g012310.1 Solanum lycopersicum HOM05D007829 ORTHO05D009903 4.7e-06 56.2 84 38.1
PGR042G0864 Punica granatum HOM05D002745 ORTHO05D002945 6.1e-06 55.8 140 25.7


User provided reference genes

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