Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G3281 Fragaria x ananassa HOM05D002924 ORTHO05D003122 3.8e-67 258.1 135 100.0
FAN16G2964 Fragaria x ananassa HOM05D002924 ORTHO05D003122 6.4e-62 240.7 135 93.3
FvH4_3g05360 Fragaria vesca HOM05D002924 ORTHO05D003122 2.8e-57 225.3 131 93.1
RcHm_v2.0_Chr5g0014391 Rosa chinensis HOM05D002924 ORTHO05D003122 1.4e-40 169.9 135 71.9
FAN11G3789 Fragaria x ananassa HOM05D000168 ORTHO05D003122 1.5e-26 123.2 74 90.5
FAN03G2400 Fragaria x ananassa HOM05D000168 ORTHO05D003122 2.5e-26 122.5 74 89.2
FAN25G0675 Fragaria x ananassa HOM05D000168 ORTHO05D003122 2.5e-26 122.5 74 89.2
MD10G1260700 Malus domestica HOM05D002924 ORTHO05D003122 1.8e-19 99.8 134 47.8
MD05G1282000 Malus domestica HOM05D002924 ORTHO05D003122 3.9e-19 98.6 103 56.3
MD05G1282100 Malus domestica HOM05D002924 ORTHO05D003122 1.9e-18 96.3 134 49.3
COL.COLO4_31051 Corchorus olitorius HOM05D002924 ORTHO05D003122 2.5e-18 95.9 135 45.9
Duzib235G1474 Durio zibethinus HOM05D002924 ORTHO05D003122 2.8e-17 92.4 135 46.7
Duzib160G0328 Durio zibethinus HOM05D002924 ORTHO05D003122 1.1e-16 90.5 134 49.3
EL10Ac8g19657 Beta vulgaris HOM05D002924 ORTHO05D003122 1.8e-16 89.7 130 44.6
Gohir.D09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 2.4e-16 89.4 136 50.7
Gorai.006G092400 Gossypium raimondii HOM05D002924 ORTHO05D003122 2.4e-16 89.4 136 50.7
Manes.15G122900 Manihot esculenta HOM05D002924 ORTHO05D003122 3.1e-16 89.0 134 44.8
ClCG01G024700 Citrullus lanatus HOM05D002924 ORTHO05D003122 5.3e-16 88.2 99 52.5
Gohir.A09G077300 Gossypium hirsutum HOM05D002924 ORTHO05D003122 6.9e-16 87.8 138 50.0
Prupe.4G082500 Prunus persica HOM05D002924 ORTHO05D003122 6.9e-16 87.8 134 48.5
GSVIVG01007188001 Vitis vinifera HOM05D002924 ORTHO05D003122 1.2e-15 87.0 108 52.8
CsaV3_6G051810 Cucumis sativus L. HOM05D002924 ORTHO05D003122 1.5e-15 86.7 105 49.5
Thecc.06G148600 Theobroma cacao HOM05D002924 ORTHO05D003122 1.5e-15 86.7 135 46.7
FvH4_3g05370 Fragaria vesca HOM05D002924 ORTHO05D003122 2.0e-15 86.3 139 50.4
MELO3C007125.2 Cucumis melo HOM05D002924 ORTHO05D003122 2.6e-15 85.9 99 52.5
Gohir.D10G042800 Gossypium hirsutum HOM05D002924 ORTHO05D003122 2.6e-15 85.9 136 44.9
Eucgr.E02416 Eucalyptus grandis HOM05D002924 ORTHO05D003122 3.4e-15 85.5 101 54.5
Gorai.011G045300 Gossypium raimondii HOM05D002924 ORTHO05D003122 3.4e-15 85.5 136 44.9
Atru.chr10.1192 Acer truncatum HOM05D002924 ORTHO05D003122 4.5e-15 85.1 136 46.3
Gohir.A10G041900 Gossypium hirsutum HOM05D002924 ORTHO05D003122 5.8e-15 84.7 135 45.9
Rhsim13G0114700 Rhododendron simsii HOM05D002924 ORTHO05D003122 5.8e-15 84.7 134 45.5
FAN25G1226 Fragaria x ananassa HOM05D002924 ORTHO05D003122 7.6e-15 84.3 140 49.3
QL05p059253 Quercus lobata HOM05D002924 ORTHO05D003122 7.6e-15 84.3 143 46.9
Sed0024828 Sechium edule HOM05D002924 ORTHO05D003122 7.6e-15 84.3 134 44.0
FAN16G0603 Fragaria x ananassa HOM05D002924 ORTHO05D003122 1.7e-14 83.2 144 50.0
Lsat_1_v5_gn_7_28101 Lactuca sativa HOM05D002924 ORTHO05D003122 1.7e-14 83.2 143 45.5
CiPaw.10G090800 Carya illinoinensis HOM05D002924 ORTHO05D003122 3.8e-14 82.0 148 43.2
Gohir.D05G150200 Gossypium hirsutum HOM05D002924 ORTHO05D003122 3.8e-14 82.0 135 43.7
Nn4g26591 Nelumbo nucifera HOM05D002924 ORTHO05D003122 3.8e-14 82.0 143 39.9
QL05p057398 Quercus lobata HOM05D002924 ORTHO05D003122 3.8e-14 82.0 143 43.4
FAN11G1040 Fragaria x ananassa HOM05D002924 ORTHO05D003122 4.9e-14 81.6 140 50.0
Glyma.08G096500 Glycine max HOM05D002924 ORTHO05D003122 4.9e-14 81.6 144 42.4
FAN21G1101 Fragaria x ananassa HOM05D002924 ORTHO05D003122 6.4e-14 81.3 140 47.9
Gohir.A05G147700 Gossypium hirsutum HOM05D002924 ORTHO05D003122 6.4e-14 81.3 135 45.9
Gorai.009G154300 Gossypium raimondii HOM05D002924 ORTHO05D003122 6.4e-14 81.3 135 43.7
Psat1g189800 Pisum sativum HOM05D002924 ORTHO05D003122 6.4e-14 81.3 135 46.7
Ciclev10017198m.g Citrus clementina HOM05D002924 ORTHO05D003122 1.1e-13 80.5 143 42.7
Dinv32237 Davidia involucrata HOM05D002924 ORTHO05D003122 1.1e-13 80.5 142 45.1
Sed0007473 Sechium edule HOM05D002924 ORTHO05D003122 1.1e-13 80.5 138 47.1
MBI02_g15229_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 2.4e-13 79.3 133 42.1
CANSAT35G0631 Cannabis sativa HOM05D002924 ORTHO05D003122 3.2e-13 79.0 100 49.0
DCAR_007884 Daucus carota HOM05D002924 ORTHO05D003122 3.2e-13 79.0 140 41.4
Sabra11G0066500 Salix brachista HOM05D002924 ORTHO05D003122 3.2e-13 79.0 141 44.7
TWI53G0343 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 5.5e-13 78.2 139 43.9
CiPaw.09G122300 Carya illinoinensis HOM05D002924 ORTHO05D003122 9.3e-13 77.4 149 40.9
Cc00_g01970 Coffea canephora HOM05D002924 ORTHO05D003122 9.3e-13 77.4 134 43.3
Glyma.05G141200 Glycine max HOM05D002924 ORTHO05D003122 9.3e-13 77.4 142 43.7
Manes.17G071600 Manihot esculenta HOM05D002924 ORTHO05D003122 9.3e-13 77.4 139 41.7
RcHm_v2.0_Chr5g0014381 Rosa chinensis HOM05D002924 ORTHO05D003122 9.3e-13 77.4 142 44.4
VMungo0540G0736 Vigna mungo HOM05D002924 ORTHO05D003122 9.3e-13 77.4 146 41.8
Actinidia39583 Actinidia chinensis HOM05D002924 ORTHO05D003122 1.6e-12 76.6 141 42.6
GSVIVG01021514001 Vitis vinifera HOM05D002924 ORTHO05D003122 1.6e-12 76.6 137 43.1
Peaxi162Scf00394g00120 Petunia axillaris HOM05D002924 ORTHO05D003122 2.1e-12 76.3 136 41.9
vmacro03333 Vaccinium macrocarpon HOM05D002924 ORTHO05D003122 2.1e-12 76.3 140 40.7
TWI09G0754 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 2.7e-12 75.9 130 44.6
GSVIVG01021516001 Vitis vinifera HOM05D002924 ORTHO05D003122 2.7e-12 75.9 140 44.3
Lalb_Chr18g0055361 Lupinus albus HOM05D002924 ORTHO05D003122 3.5e-12 75.5 143 44.8
Actinidia07706 Actinidia chinensis HOM05D002924 ORTHO05D003122 4.6e-12 75.1 134 42.5
Dinv05213 Davidia involucrata HOM05D002924 ORTHO05D003122 4.6e-12 75.1 143 42.7
Potri.011G083900 Populus trichocarpa HOM05D002924 ORTHO05D003122 4.6e-12 75.1 139 43.2
AL1G44040 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 6.0e-12 74.7 139 41.7
Eucgr.D00289 Eucalyptus grandis HOM05D002924 ORTHO05D003122 6.0e-12 74.7 144 41.7
HanXRQChr15g0482111 Helianthus annuus HOM05D002924 ORTHO05D003122 6.0e-12 74.7 144 42.4
MSTRG.7496 Avicennia marina HOM05D002924 ORTHO05D003122 7.9e-12 74.3 131 41.2
Peaxi162Scf00317g00117 Petunia axillaris HOM05D002924 ORTHO05D003122 7.9e-12 74.3 142 43.0
TAR624G0146 Trochodendron aralioides HOM05D002924 ORTHO05D003122 7.9e-12 74.3 97 46.4
Lalb_Chr15g0086781 Lupinus albus HOM05D002924 ORTHO05D003122 1.0e-11 73.9 148 39.9
Psat1g195000 Pisum sativum HOM05D002924 ORTHO05D003122 1.0e-11 73.9 99 51.5
Nitab4.5_0001531g0050 Nicotiana tabacum HOM05D002924 ORTHO05D003122 1.3e-11 73.6 101 46.5
MBI02_g15230_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 1.8e-11 73.2 133 39.8
PGSC0003DMG400008781 Solanum tuberosum HOM05D002924 ORTHO05D003122 1.8e-11 73.2 135 43.7
TAR488G0001 Trochodendron aralioides HOM05D002924 ORTHO05D003122 1.8e-11 73.2 133 42.1
Glyma.15G093100 Glycine max HOM05D002924 ORTHO05D003122 2.3e-11 72.8 142 40.8
Nitab4.5_0001531g0020 Nicotiana tabacum HOM05D002924 ORTHO05D003122 2.3e-11 72.8 137 39.4
Psat1g194920 Pisum sativum HOM05D002924 ORTHO05D003122 2.3e-11 72.8 99 50.5
GSVIVG01021519001 Vitis vinifera HOM05D002924 ORTHO05D003122 2.3e-11 72.8 132 40.2
MSTRG.16253 Avicennia marina HOM05D002924 ORTHO05D003122 3.0e-11 72.4 138 44.2
DCAR_003905 Daucus carota HOM05D002924 ORTHO05D003122 3.0e-11 72.4 114 40.4
SalBow8G3543 Salvia bowleyana HOM05D002924 ORTHO05D003122 3.0e-11 72.4 134 41.8
MSTRG.14778 Avicennia marina HOM05D002924 ORTHO05D003122 3.9e-11 72.0 137 42.3
Cpa.g.sc17.12 Carica papaya HOM05D002924 ORTHO05D003122 6.7e-11 71.2 134 41.0
Migut.H01355 Erythranthe guttata HOM05D002924 ORTHO05D003122 6.7e-11 71.2 133 42.1
Lj6g0009882 Lotus japonicus HOM05D002924 ORTHO05D003122 6.7e-11 71.2 143 39.2
CSS0028188 Camellia sinensis var. sinensis HOM05D002924 ORTHO05D003122 8.7e-11 70.9 146 43.2
ECA236G5022 Erigeron canadensis HOM05D002924 ORTHO05D003122 8.7e-11 70.9 147 41.5
MD09G1136800 Malus domestica HOM05D002924 ORTHO05D003122 8.7e-11 70.9 98 44.9
Peaxi162Scf00317g00121 Petunia axillaris HOM05D002924 ORTHO05D003122 8.7e-11 70.9 139 39.6
MBI02_g15233_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.1e-10 70.5 126 41.3
Potri.006G023301 Populus trichocarpa HOM05D002924 ORTHO05D003122 1.5e-10 70.1 133 40.6
TPR.G36164 Trifolium pratense HOM05D002924 ORTHO05D003122 1.5e-10 70.1 138 41.3
Nitab4.5_0005246g0010 Nicotiana tabacum HOM05D002924 ORTHO05D003122 1.9e-10 69.7 140 40.7
MBI18_g24474_MAGBIO Magnolia biondii HOM05D002924 ORTHO05D003122 2.5e-10 69.3 105 42.9
Glyma.13G219100 Glycine max HOM05D002924 ORTHO05D003122 3.3e-10 68.9 147 39.5
Prupe.3G188200 Prunus persica HOM05D002924 ORTHO05D003122 3.3e-10 68.9 101 41.6
AT1G30135 Arabidopsis thaliana HOM05D002924 ORTHO05D003122 4.3e-10 68.6 139 40.3
Medtr2g019190 Medicago truncatula HOM05D002924 ORTHO05D003122 4.3e-10 68.6 141 41.1
Psat7g082920 Pisum sativum HOM05D002924 ORTHO05D003122 4.3e-10 68.6 131 41.2
Solyc08g036620.4 Solanum lycopersicum HOM05D002924 ORTHO05D003122 4.3e-10 68.6 134 41.0
Sed0008794 Sechium edule HOM05D002924 ORTHO05D003122 5.6e-10 68.2 141 41.8
Aqoxy1G01686 Aquilegia oxysepala HOM05D002924 ORTHO05D003122 7.4e-10 67.8 137 40.1
THA.LOC104812674 Tarenaya hassleriana HOM05D002924 ORTHO05D003122 9.6e-10 67.4 136 39.7
TAR626G0560 Trochodendron aralioides HOM05D002924 ORTHO05D003122 9.6e-10 67.4 132 40.9
HanXRQChr04g0114381 Helianthus annuus HOM05D002924 ORTHO05D003122 1.3e-09 67.0 143 38.5
Sc05g0006100 Simmondsia chinensis HOM05D002924 ORTHO05D003122 1.3e-09 67.0 135 37.8
PGSC0003DMG400001174 Solanum tuberosum HOM05D002924 ORTHO05D003122 1.3e-09 67.0 134 38.8
TAR626G1845 Trochodendron aralioides HOM05D002924 ORTHO05D003122 1.3e-09 67.0 135 40.7
arahy.Tifrunner.gnm1.ann1.IG3UT7 Arachis hypogaea HOM05D002924 ORTHO05D003122 1.6e-09 66.6 145 38.6
ClCG03G006750 Citrullus lanatus HOM05D002924 ORTHO05D003122 1.6e-09 66.6 149 39.6
Manes.15G122700 Manihot esculenta HOM05D002924 ORTHO05D003122 1.6e-09 66.6 136 39.0
Sed0009253 Sechium edule HOM05D002924 ORTHO05D003122 1.6e-09 66.6 138 39.9
Solyc08g036640.3 Solanum lycopersicum HOM05D002924 ORTHO05D003122 1.6e-09 66.6 134 39.6
Sopen08g011400 Solanum pennellii HOM05D002924 ORTHO05D003122 1.6e-09 66.6 134 39.6
CARHR128700 Cardamine hirsuta HOM05D002924 ORTHO05D003122 2.8e-09 65.9 136 41.9
MD17G1127000 Malus domestica HOM05D002924 ORTHO05D003122 2.8e-09 65.9 104 40.4
PSO675G3356 Papaver somniferum HOM05D002924 ORTHO05D003122 2.8e-09 65.9 133 35.3
arahy.Tifrunner.gnm1.ann1.P4WXL8 Arachis hypogaea HOM05D002924 ORTHO05D003122 3.7e-09 65.5 140 37.1
Nitab4.5_0009991g0010 Nicotiana tabacum HOM05D002924 ORTHO05D003122 3.7e-09 65.5 141 39.0
Solyc08g036660.4 Solanum lycopersicum HOM05D002924 ORTHO05D003122 3.7e-09 65.5 145 37.9
THA.LOC104814306 Tarenaya hassleriana HOM05D002924 ORTHO05D003122 3.7e-09 65.5 146 36.3
Actinidia18522 Actinidia chinensis HOM05D002924 ORTHO05D003122 4.8e-09 65.1 141 35.5
Thhalv10009598m.g Eutrema salsugineum HOM05D002924 ORTHO05D003122 4.8e-09 65.1 135 37.8
GSVIVG01021518001 Vitis vinifera HOM05D002924 ORTHO05D003122 4.8e-09 65.1 96 42.7
Phvul.006G165800 Phaseolus vulgaris HOM05D002924 ORTHO05D003122 6.2e-09 64.7 146 36.3
PGSC0003DMG400008782 Solanum tuberosum HOM05D002924 ORTHO05D003122 6.2e-09 64.7 143 39.2
arahy.Tifrunner.gnm1.ann1.A76KD4 Arachis hypogaea HOM05D002924 ORTHO05D003122 1.1e-08 63.9 140 37.1
Carub.0004s1628 Capsella rubella HOM05D002924 ORTHO05D003122 1.1e-08 63.9 142 41.5
PGR004G2368 Punica granatum HOM05D002924 ORTHO05D003122 1.1e-08 63.9 130 39.2
Lj4g0026158 Lotus japonicus HOM05D002924 ORTHO05D003122 1.8e-08 63.2 141 35.5
Medtr8g107300 Medicago truncatula HOM05D002924 ORTHO05D003122 1.8e-08 63.2 136 41.9
Sopen08g011370 Solanum pennellii HOM05D002924 ORTHO05D003122 1.8e-08 63.2 134 40.3
CARHR029250 Cardamine hirsuta HOM05D002924 ORTHO05D003122 4.0e-08 62.0 133 40.6
CDE12G0054 Ceratophyllum demersum HOM05D002924 ORTHO05D003122 4.0e-08 62.0 132 40.2
PGSC0003DMG400001178 Solanum tuberosum HOM05D002924 ORTHO05D003122 4.0e-08 62.0 134 38.8
ClCG07G010850 Citrullus lanatus HOM05D002924 ORTHO05D003122 6.9e-08 61.2 137 36.5
unitig_26.g9758 Utricularia gibba HOM05D002924 ORTHO05D003122 6.9e-08 61.2 133 36.8
AL270U10010 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 9.0e-08 60.8 137 39.4
AT2G34600 Arabidopsis thaliana HOM05D002924 ORTHO05D003122 9.0e-08 60.8 137 39.4
CAN.G50.1 Capsicum annuum HOM05D002924 ORTHO05D003122 1.2e-07 60.5 134 38.1
TWI53G1424 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 1.2e-07 60.5 140 39.3
AL4G30580 Arabidopsis lyrata HOM05D002924 ORTHO05D003122 1.5e-07 60.1 137 39.4
Cc02_g30950 Coffea canephora HOM05D002924 ORTHO05D003122 1.5e-07 60.1 134 37.3
Migut.M00900 Erythranthe guttata HOM05D002924 ORTHO05D003122 2.0e-07 59.7 145 38.6
PGR031G1937 Punica granatum HOM05D002924 ORTHO05D003122 2.0e-07 59.7 152 32.9
Sp4g16870 Schrenkiella parvula HOM05D002924 ORTHO05D003122 2.6e-07 59.3 139 37.4
PGR083G2757 Punica granatum HOM05D002924 ORTHO05D003122 4.5e-07 58.5 101 40.6
Sp1g26000 Schrenkiella parvula HOM05D002924 ORTHO05D003122 4.5e-07 58.5 142 33.8
Hund21543 Selenicereus undatus HOM05D002924 ORTHO05D003122 4.5e-07 58.5 140 34.3
Sopen08g011410 Solanum pennellii HOM05D002924 ORTHO05D003122 4.5e-07 58.5 130 36.9
SGA_v2.0_scaffold223G42810 Striga asiatica HOM05D002924 ORTHO05D003122 4.5e-07 58.5 137 35.8
MELO3C016195.2 Cucumis melo HOM05D002924 ORTHO05D003122 5.8e-07 58.2 104 38.5
Carub.0001s2837 Capsella rubella HOM05D002924 ORTHO05D003122 7.6e-07 57.8 144 37.5
Solyc08g036505.2 Solanum lycopersicum HOM05D002924 ORTHO05D003122 7.6e-07 57.8 134 35.1
TWI09G0054 Tripterygium wilfordii HOM05D002924 ORTHO05D003122 7.6e-07 57.8 142 39.4
CDE01G0236 Ceratophyllum demersum HOM05D002924 ORTHO05D003122 1.0e-06 57.4 132 36.4
Sopen08g011170 Solanum pennellii HOM05D002924 ORTHO05D003122 1.3e-06 57.0 134 33.6
BcaB07g32615 Brassica carinata HOM05D002924 ORTHO05D003122 2.2e-06 56.2 139 38.1
BcaC01g00158 Brassica carinata HOM05D002924 ORTHO05D003122 2.2e-06 56.2 143 34.3
A08p24680 Brassica napus HOM05D002924 ORTHO05D003122 2.2e-06 56.2 143 34.3
C03p76420 Brassica napus HOM05D002924 ORTHO05D003122 2.2e-06 56.2 140 33.6
BolC3t19897H Brassica oleracea HOM05D002924 ORTHO05D003122 2.2e-06 56.2 143 34.3
BraA08t34423Z Brassica rapa HOM05D002924 ORTHO05D003122 2.2e-06 56.2 143 34.3
CANSAT64G2355 Cannabis sativa HOM05D002924 ORTHO05D003122 2.2e-06 56.2 96 41.7
Sed0027890 Sechium edule HOM05D002924 ORTHO05D003122 2.2e-06 56.2 135 36.3
HPP92_011075 Vanilla planifolia HOM05D002924 ORTHO05D003122 2.2e-06 56.2 101 34.7
BolC4t27859H Brassica oleracea HOM05D002924 ORTHO05D003122 4.9e-06 55.1 135 34.8
CsaV3_4G007460 Cucumis sativus L. HOM05D002924 ORTHO05D003122 4.9e-06 55.1 142 36.6
ATR1098G148 Amborella trichopoda HOM05D002924 ORTHO05D003122 6.5e-06 54.7 115 41.7
BcaB02g09523 Brassica carinata HOM05D002924 ORTHO05D003122 6.5e-06 54.7 136 36.0
BcaB03g12198 Brassica carinata HOM05D002924 ORTHO05D003122 6.5e-06 54.7 144 33.3
MELO3C001202.2 Cucumis melo HOM05D002924 ORTHO05D003122 6.5e-06 54.7 105 38.1
Sed0002750 Sechium edule HOM05D002924 ORTHO05D003122 6.5e-06 54.7 102 38.2
THA.LOC104820654 Tarenaya hassleriana HOM05D002924 ORTHO05D003122 6.5e-06 54.7 133 35.3
BcaC02g11537 Brassica carinata HOM05D002924 ORTHO05D003122 8.4e-06 54.3 135 37.0
C04p14200 Brassica napus HOM05D002924 ORTHO05D003122 8.4e-06 54.3 135 37.0
BolC4t23009H Brassica oleracea HOM05D002924 ORTHO05D003122 8.4e-06 54.3 135 37.0
Oeu031277.1 Olea europaea HOM05D002924 ORTHO05D003122 8.4e-06 54.3 141 36.2


User provided reference genes

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