Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN16G3227 Fragaria x ananassa HOM05D001231 ORTHO05D001012 3.5e-27 124.0 55 100.0
FAN21G3240 Fragaria x ananassa HOM05D001231 ORTHO05D001012 3.5e-27 124.0 55 100.0
FAN25G0202 Fragaria x ananassa HOM05D001231 ORTHO05D001012 3.5e-27 124.0 55 100.0
RcHm_v2.0_Chr5g0024061 Rosa chinensis HOM05D001231 ORTHO05D001012 6.7e-26 119.8 55 94.5
MD05G1234500 Malus domestica HOM05D001231 ORTHO05D001012 1.8e-23 111.7 54 87.0
Prupe.4G131400 Prunus persica HOM05D001231 ORTHO05D001012 1.1e-20 102.4 54 75.9
RcHm_v2.0_Chr5g0024081 Rosa chinensis HOM05D001231 ORTHO05D001012 3.5e-19 97.4 54 74.1
FvH4_3g14620 Fragaria vesca HOM05D001231 ORTHO05D001012 2.3e-18 94.7 54 74.1
RcHm_v2.0_Chr5g0024091 Rosa chinensis HOM05D001231 ORTHO05D001012 3.9e-18 94.0 54 70.4
FAN16G1567 Fragaria x ananassa HOM05D001231 ORTHO05D001012 1.1e-17 92.4 54 72.2
FAN25G0988 Fragaria x ananassa HOM05D001231 ORTHO05D001012 4.3e-17 90.5 52 71.2
FvH4_3g14600 Fragaria vesca HOM05D001231 ORTHO05D001012 1.3e-16 89.0 55 65.5
FAN11G1290 Fragaria x ananassa HOM05D001231 ORTHO05D001012 1.3e-16 89.0 55 65.5
FAN16G3645 Fragaria x ananassa HOM05D001231 ORTHO05D001012 1.3e-16 89.0 55 65.5
MD05G1234800 Malus domestica HOM05D001231 ORTHO05D001012 9.0e-15 82.8 54 64.8
FAN21G1429 Fragaria x ananassa HOM05D020793 ORTHO05D025367 3.4e-14 80.9 48 66.7
Psat4g112360 Pisum sativum HOM05D001231 ORTHO05D001012 1.9e-09 65.1 53 52.8
SalBow6G2289 Salvia bowleyana HOM05D001231 ORTHO05D001012 4.3e-09 63.9 50 54.0
Psat4g112240 Pisum sativum HOM05D001231 ORTHO05D001012 9.7e-09 62.8 53 52.8
GSVIVG01000230001 Vitis vinifera HOM05D001231 ORTHO05D001012 9.7e-09 62.8 55 50.9
HanXRQChr12g0365811 Helianthus annuus HOM05D001231 ORTHO05D001012 1.3e-08 62.4 50 52.0
Nitab4.5_0001882g0020 Nicotiana tabacum HOM05D009059 ORTHO05D011207 1.6e-08 62.0 54 48.1
CiPaw.04G178300 Carya illinoinensis HOM05D001231 ORTHO05D001012 2.2e-08 61.6 55 49.1
CiPaw.04G178400 Carya illinoinensis HOM05D001231 ORTHO05D001012 4.8e-08 60.5 55 50.9
MELO3C005215.2 Cucumis melo HOM05D001231 ORTHO05D001012 4.8e-08 60.5 50 54.0
Glyma.06G160300 Glycine max HOM05D001231 ORTHO05D001012 4.8e-08 60.5 55 47.3
CDE04G2371 Ceratophyllum demersum HOM05D001231 ORTHO05D001012 6.3e-08 60.1 54 46.3
Phvul.002G278600 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 6.3e-08 60.1 54 50.0
CDE07G0627 Ceratophyllum demersum HOM05D001231 ORTHO05D001012 8.2e-08 59.7 54 46.3
Ciclev10005867m.g Citrus clementina HOM05D001231 ORTHO05D001012 8.2e-08 59.7 53 41.5
Os02g0212100 Oryza sativa ssp. japonica HOM05D001231 ORTHO05D001012 8.2e-08 59.7 54 48.1
Medtr8g070790 Medicago truncatula HOM05D001231 ORTHO05D001012 1.1e-07 59.3 54 46.3
Peaxi162Scf00088g01110 Petunia axillaris HOM05D001231 ORTHO05D001012 1.1e-07 59.3 55 47.3
Hund22171 Selenicereus undatus HOM05D001231 ORTHO05D001012 1.1e-07 59.3 55 45.5
Gohir.D01G023526 Gossypium hirsutum HOM05D001231 ORTHO05D001012 1.4e-07 58.9 54 44.4
Gorai.002G029700 Gossypium raimondii HOM05D001231 ORTHO05D001012 1.4e-07 58.9 54 44.4
PGR102G0532 Punica granatum HOM05D001231 ORTHO05D001012 1.4e-07 58.9 54 44.4
SGA_v2.0_scaffold7G03620 Striga asiatica HOM05D000870 ORTHO05D000715 1.4e-07 58.9 49 51.0
Hund09739 Selenicereus undatus HOM05D001231 ORTHO05D001012 1.8e-07 58.5 51 49.0
Phvul.009G158000 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 2.4e-07 58.2 55 47.3
C02p50240 Brassica napus HOM05D001231 ORTHO05D001012 3.1e-07 57.8 53 47.2
BolC2t11102H Brassica oleracea HOM05D001231 ORTHO05D001012 3.1e-07 57.8 53 47.2
Gohir.A01G033800 Gossypium hirsutum HOM05D001231 ORTHO05D001012 3.1e-07 57.8 48 47.9
Gohir.D01G023520 Gossypium hirsutum HOM05D001231 ORTHO05D001012 3.1e-07 57.8 48 47.9
CARHR144760 Cardamine hirsuta HOM05D001231 ORTHO05D001012 4.1e-07 57.4 50 48.0
MD13G1011800 Malus domestica HOM05D001231 ORTHO05D001012 4.1e-07 57.4 50 48.0
MD13G1012000 Malus domestica HOM05D001231 ORTHO05D001012 4.1e-07 57.4 50 48.0
RcHm_v2.0_Chr7g0227171 Rosa chinensis HOM05D001231 ORTHO05D001012 4.1e-07 57.4 55 47.3
FvH4_5g33001 Fragaria vesca HOM05D001231 ORTHO05D001012 5.3e-07 57.0 55 45.5
FAN04G0442 Fragaria x ananassa HOM05D001231 ORTHO05D001012 5.3e-07 57.0 55 45.5
FAN18G0803 Fragaria x ananassa HOM05D001231 ORTHO05D001012 5.3e-07 57.0 55 45.5
Gohir.A03G115800 Gossypium hirsutum HOM05D001231 ORTHO05D001012 5.3e-07 57.0 49 46.9
MD00G1135500 Malus domestica HOM05D001231 ORTHO05D001012 5.3e-07 57.0 55 43.6
Medtr8g070780 Medicago truncatula HOM05D001231 ORTHO05D001012 5.3e-07 57.0 49 49.0
Prupe.1G201200 Prunus persica HOM05D001231 ORTHO05D001012 5.3e-07 57.0 55 45.5
BcaC03g17116 Brassica carinata HOM05D001231 ORTHO05D001012 6.9e-07 56.6 53 47.2
MD13G1011700 Malus domestica HOM05D001231 ORTHO05D001012 6.9e-07 56.6 50 48.0
MD14G1061900 Malus domestica HOM05D001231 ORTHO05D001012 6.9e-07 56.6 52 42.3
Nn7g38191 Nelumbo nucifera HOM05D001231 ORTHO05D001012 6.9e-07 56.6 54 42.6
PSO541G0662 Papaver somniferum HOM05D001231 ORTHO05D001012 6.9e-07 56.6 50 46.0
Hund09734 Selenicereus undatus HOM05D001231 ORTHO05D001012 6.9e-07 56.6 51 47.1
BcaC06g34079 Brassica carinata HOM05D001231 ORTHO05D001012 9.0e-07 56.2 50 50.0
A02p32650 Brassica napus HOM05D001231 ORTHO05D001012 9.0e-07 56.2 53 45.3
A06p43800 Brassica napus HOM05D001231 ORTHO05D001012 9.0e-07 56.2 50 50.0
C07p32970 Brassica napus HOM05D001231 ORTHO05D001012 9.0e-07 56.2 50 50.0
BolC7t43808H Brassica oleracea HOM05D001231 ORTHO05D001012 9.0e-07 56.2 50 50.0
BraA02t08280Z Brassica rapa HOM05D001231 ORTHO05D001012 9.0e-07 56.2 53 45.3
BraA06t27257Z Brassica rapa HOM05D001231 ORTHO05D001012 9.0e-07 56.2 50 50.0
Lj1g0011574 Lotus japonicus HOM05D001231 ORTHO05D001012 9.0e-07 56.2 53 43.4
Potri.T011300 Populus trichocarpa HOM05D001231 ORTHO05D001012 9.0e-07 56.2 55 45.5
Potri.T011301 Populus trichocarpa HOM05D001231 ORTHO05D001012 9.0e-07 56.2 55 45.5
Sp2g13520 Schrenkiella parvula HOM05D001231 ORTHO05D001012 9.0e-07 56.2 50 50.0
Sed0017845 Sechium edule HOM05D001231 ORTHO05D001012 9.0e-07 56.2 54 44.4
BcaB07g30354 Brassica carinata HOM05D001231 ORTHO05D001012 1.2e-06 55.8 50 48.0
Gohir.D02G139400 Gossypium hirsutum HOM05D001231 ORTHO05D001012 1.2e-06 55.8 49 46.9
Gorai.005G157500 Gossypium raimondii HOM05D001231 ORTHO05D001012 1.2e-06 55.8 49 46.9
MD12G1061400 Malus domestica HOM05D001231 ORTHO05D001012 1.2e-06 55.8 52 40.4
MD12G1061700 Malus domestica HOM05D001231 ORTHO05D001012 1.2e-06 55.8 52 40.4
PGSC0003DMG400015132 Solanum tuberosum HOM05D001231 ORTHO05D001012 1.2e-06 55.8 51 47.1
Os04g0189400 Oryza sativa ssp. japonica HOM05D001231 ORTHO05D001012 1.5e-06 55.5 51 47.1
Sp2g13530 Schrenkiella parvula HOM05D001231 ORTHO05D001012 1.5e-06 55.5 50 50.0
EL10Ac5g10881 Beta vulgaris HOM05D001231 ORTHO05D001012 2.0e-06 55.1 50 48.0
FAN08G1943 Fragaria x ananassa HOM05D001231 ORTHO05D001012 2.0e-06 55.1 55 43.6
Manes.05G122400 Manihot esculenta HOM05D001231 ORTHO05D001012 2.0e-06 55.1 55 47.3
Manes.07G074400 Manihot esculenta HOM05D001231 ORTHO05D001012 2.0e-06 55.1 55 45.5
Nitab4.5_0001626g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 2.0e-06 55.1 49 49.0
Nitab4.5_0001626g0020 Nicotiana tabacum HOM05D009059 ORTHO05D011207 2.0e-06 55.1 49 49.0
Nitab4.5_0005404g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 2.0e-06 55.1 49 49.0
Phvul.002G278700 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 2.0e-06 55.1 54 46.3
Prupe.1G341700 Prunus persica HOM05D001231 ORTHO05D001012 2.0e-06 55.1 53 41.5
Hund18397 Selenicereus undatus HOM05D001231 ORTHO05D001012 2.0e-06 55.1 51 47.1
TWI79G1670 Tripterygium wilfordii HOM05D001231 ORTHO05D001012 2.0e-06 55.1 55 45.5
CAN.G976.6 Capsicum annuum HOM05D001231 ORTHO05D001012 2.6e-06 54.7 50 50.0
Cc06_g07890 Coffea canephora HOM05D001231 ORTHO05D001012 2.6e-06 54.7 47 44.7
HanXRQChr08g0224941 Helianthus annuus HOM05D001231 ORTHO05D001012 2.6e-06 54.7 53 49.1
Nn7g38263 Nelumbo nucifera HOM05D001231 ORTHO05D001012 2.6e-06 54.7 54 40.7
Solyc11g006260.2 Solanum lycopersicum HOM05D001231 ORTHO05D001012 2.6e-06 54.7 55 41.8
Sopen11g002190 Solanum pennellii HOM05D001231 ORTHO05D001012 2.6e-06 54.7 55 41.8
Actinidia39325 Actinidia chinensis HOM05D001231 ORTHO05D001012 3.4e-06 54.3 53 39.6
EL10Ac5g10884 Beta vulgaris HOM05D001231 ORTHO05D001012 3.4e-06 54.3 50 44.0
Carub.0005s0116 Capsella rubella HOM05D001231 ORTHO05D001012 3.4e-06 54.3 50 48.0
Cc06_g07880 Coffea canephora HOM05D001231 ORTHO05D001012 3.4e-06 54.3 51 47.1
MD14G1061400 Malus domestica HOM05D001231 ORTHO05D001012 3.4e-06 54.3 52 40.4
Manes.02G163900 Manihot esculenta HOM05D001231 ORTHO05D001012 3.4e-06 54.3 51 45.1
Nitab4.5_0000374g0060 Nicotiana tabacum HOM05D001231 ORTHO05D001012 3.4e-06 54.3 51 45.1
Peaxi162Scf00376g00828 Petunia axillaris HOM05D001231 ORTHO05D001012 3.4e-06 54.3 53 41.5
QL10p038692 Quercus lobata HOM05D001231 ORTHO05D001012 3.4e-06 54.3 54 40.7
RcHm_v2.0_Chr4g0445801 Rosa chinensis HOM05D001231 ORTHO05D001012 3.4e-06 54.3 54 44.4
RcHm_v2.0_Chr7g0231101 Rosa chinensis HOM05D001231 ORTHO05D001012 3.4e-06 54.3 55 43.6
Hund09741 Selenicereus undatus HOM05D001231 ORTHO05D001012 3.4e-06 54.3 51 49.0
Solyc07g007730.4 Solanum lycopersicum HOM05D001231 ORTHO05D001012 3.4e-06 54.3 54 42.6
Sopen07g001060 Solanum pennellii HOM05D001231 ORTHO05D001012 3.4e-06 54.3 54 42.6
AL5G11390 Arabidopsis lyrata HOM05D001231 ORTHO05D001012 4.5e-06 53.9 50 50.0
AT2G02140 Arabidopsis thaliana HOM05D001231 ORTHO05D001012 4.5e-06 53.9 50 50.0
CARHR144790 Cardamine hirsuta HOM05D001231 ORTHO05D001012 4.5e-06 53.9 53 43.4
Manes.18G077618 Manihot esculenta HOM05D001231 ORTHO05D001012 4.5e-06 53.9 54 44.4
PSO541G3846 Papaver somniferum HOM05D001231 ORTHO05D001012 4.5e-06 53.9 50 44.0
PSO675G6539 Papaver somniferum HOM05D001231 ORTHO05D001012 4.5e-06 53.9 50 44.0
RcHm_v2.0_Chr4g0445761 Rosa chinensis HOM05D001231 ORTHO05D001012 4.5e-06 53.9 51 45.1
RcHm_v2.0_Chr4g0445851 Rosa chinensis HOM05D001231 ORTHO05D001012 4.5e-06 53.9 54 44.4
Sopen10g004450 Solanum pennellii HOM05D018601 ORTHO05D018052 4.5e-06 53.9 50 44.0
AL5G11380 Arabidopsis lyrata HOM05D001231 ORTHO05D001012 5.9e-06 53.5 50 48.0
AT2G02130 Arabidopsis thaliana HOM05D001231 ORTHO05D001012 5.9e-06 53.5 50 48.0
MELO3C005214.2 Cucumis melo HOM05D001231 ORTHO05D001012 5.9e-06 53.5 50 48.0
Dinv00224 Davidia involucrata HOM05D001231 ORTHO05D001012 5.9e-06 53.5 51 45.1
Gorai.002G029500 Gossypium raimondii HOM05D001231 ORTHO05D001012 5.9e-06 53.5 48 43.8
Hma1.2p1_0383F.1_g140490 Hydrangea macrophylla HOM05D001231 ORTHO05D001012 5.9e-06 53.5 50 48.0
RcHm_v2.0_Chr4g0445781 Rosa chinensis HOM05D001231 ORTHO05D001012 5.9e-06 53.5 53 41.5
MSTRG.2131 Avicennia marina HOM05D001231 ORTHO05D001012 7.7e-06 53.1 51 45.1
ClCG02G000130 Citrullus lanatus HOM05D001231 ORTHO05D001012 7.7e-06 53.1 52 44.2
FvH4_4g36102 Fragaria vesca HOM05D001231 ORTHO05D001012 7.7e-06 53.1 51 45.1
FAN07G0709 Fragaria x ananassa HOM05D001231 ORTHO05D001012 7.7e-06 53.1 51 45.1
MBI06_g26879_MAGBIO Magnolia biondii HOM05D001231 ORTHO05D001012 7.7e-06 53.1 50 46.0
Nitab4.5_0001882g0010 Nicotiana tabacum HOM05D009059 ORTHO05D011207 7.7e-06 53.1 49 46.9
Os03g0130300 Oryza sativa ssp. japonica HOM05D001231 ORTHO05D001012 7.7e-06 53.1 53 45.3
Psat4g112280 Pisum sativum HOM05D001231 ORTHO05D001012 7.7e-06 53.1 53 43.4
RcHm_v2.0_Chr4g0445791 Rosa chinensis HOM05D001231 ORTHO05D001012 7.7e-06 53.1 54 44.4
Hund02692 Selenicereus undatus HOM05D001231 ORTHO05D001012 7.7e-06 53.1 50 44.0
PGSC0003DMG400030677 Solanum tuberosum HOM05D001231 ORTHO05D001012 7.7e-06 53.1 51 45.1
Thecc.04G141100 Theobroma cacao HOM05D001231 ORTHO05D001012 7.7e-06 53.1 55 41.8
BcaC04g21530 Brassica carinata HOM05D001231 ORTHO05D001012 1.0e-05 52.8 50 48.0
C09p30680 Brassica napus HOM05D001231 ORTHO05D001012 1.0e-05 52.8 50 48.0
BolC9t55933H Brassica oleracea HOM05D001231 ORTHO05D001012 1.0e-05 52.8 50 48.0
CSS0038401 Camellia sinensis var. sinensis HOM05D001231 ORTHO05D001012 1.0e-05 52.8 54 40.7
Cc11_g07160 Coffea canephora HOM05D001231 ORTHO05D001012 1.0e-05 52.8 51 45.1
FvH4_3g40491 Fragaria vesca HOM05D001231 ORTHO05D001012 1.0e-05 52.8 55 43.6
SalBow1G3487 Salvia bowleyana HOM05D001231 ORTHO05D001012 1.0e-05 52.8 54 42.6
Solyc09g074440.3 Solanum lycopersicum HOM05D018601 ORTHO05D018052 1.0e-05 52.8 50 44.0


User provided reference genes

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