Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G3202 Fragaria x ananassa HOM05D004454 ORTHO05D035857 2.4e-125 452.2 230 100.0
FAN24G1390 Fragaria x ananassa HOM05D004454 ORTHO05D035857 8.8e-88 327.4 236 76.3
FAN16G3295 Fragaria x ananassa HOM05D004454 ORTHO05D035857 1.5e-47 193.7 213 57.3
FAN04G1717 Fragaria x ananassa HOM05D004454 ORTHO05D005462 7.5e-47 191.4 130 76.9
FAN13G0079 Fragaria x ananassa HOM05D004454 ORTHO05D005462 7.5e-47 191.4 130 76.9
FvH4_5g16310 Fragaria vesca HOM05D004454 ORTHO05D005462 9.8e-47 191.0 120 80.8
FAN18G3350 Fragaria x ananassa HOM05D004454 ORTHO05D005462 3.7e-46 189.1 120 80.0
FAN08G3623 Fragaria x ananassa HOM05D004454 ORTHO05D005462 8.3e-46 188.0 120 80.0
RcHm_v2.0_Chr7g0179821 Rosa chinensis HOM05D004454 ORTHO05D005462 2.4e-45 186.4 122 79.5
Prupe.5G180200 Prunus persica HOM05D004454 ORTHO05D005462 8.6e-35 151.4 120 65.0
MBI01_g40850_MAGBIO Magnolia biondii HOM05D004454 ORTHO05D005462 1.1e-34 151.0 130 59.2
MD13G1029000 Malus domestica HOM05D004454 ORTHO05D005462 1.9e-34 150.2 120 62.5
MD14G1188000 Malus domestica HOM05D004454 ORTHO05D005462 1.9e-34 150.2 120 62.5
DCAR_026102 Daucus carota HOM05D004454 ORTHO05D005462 7.3e-34 148.3 120 62.5
Actinidia34963 Actinidia chinensis HOM05D004454 ORTHO05D005462 9.5e-34 147.9 118 65.3
MD06G1182000 Malus domestica HOM05D004454 ORTHO05D005462 9.5e-34 147.9 120 60.8
Lj9A454G67 Lonicera japonica HOM05D004454 ORTHO05D005462 2.8e-33 146.4 120 64.2
Actinidia19078 Actinidia chinensis HOM05D004454 ORTHO05D005462 3.6e-33 146.0 118 64.4
Eucgr.B00321 Eucalyptus grandis HOM05D004454 ORTHO05D005462 3.6e-33 146.0 120 62.5
Eucgr.B00325 Eucalyptus grandis HOM05D004454 ORTHO05D005462 3.6e-33 146.0 120 62.5
Rhsim12G0161100 Rhododendron simsii HOM05D004454 ORTHO05D005462 6.2e-33 145.2 120 63.3
vmacro16584 Vaccinium macrocarpon HOM05D004454 ORTHO05D005462 6.2e-33 145.2 120 63.3
Ca_26268_v3 Cicer arietinum L. HOM05D004454 ORTHO05D005462 8.1e-33 144.8 118 62.7
MD17G1272000 Malus domestica HOM05D004454 ORTHO05D005462 8.1e-33 144.8 115 62.6
VMungo1215G3435 Vigna mungo HOM05D004454 ORTHO05D005462 1.1e-32 144.4 120 61.7
CSS0019873 Camellia sinensis var. sinensis HOM05D004454 ORTHO05D005462 1.4e-32 144.1 118 63.6
CSS0024488 Camellia sinensis var. sinensis HOM05D004454 ORTHO05D005462 1.4e-32 144.1 118 63.6
QL02p081076 Quercus lobata HOM05D004454 ORTHO05D005462 1.4e-32 144.1 121 62.0
QL10p027831 Quercus lobata HOM05D004454 ORTHO05D005462 1.4e-32 144.1 121 62.0
GSVIVG01000277001 Vitis vinifera HOM05D004454 ORTHO05D005462 1.4e-32 144.1 122 61.5
Manes.14G071000 Manihot esculenta HOM05D004454 ORTHO05D005462 1.8e-32 143.7 118 63.6
Glyma.11G026400 Glycine max HOM05D004454 ORTHO05D005462 2.4e-32 143.3 120 60.8
arahy.Tifrunner.gnm1.ann1.AQXS59 Arachis hypogaea HOM05D004454 ORTHO05D005462 3.1e-32 142.9 120 61.7
Hma1.2p1_0002F.1_g002910 Hydrangea macrophylla HOM05D004454 ORTHO05D005462 3.1e-32 142.9 120 61.7
Lsat_1_v5_gn_5_17960 Lactuca sativa HOM05D004454 ORTHO05D005462 3.1e-32 142.9 120 62.5
Phvul.002G154200 Phaseolus vulgaris HOM05D004454 ORTHO05D005462 3.1e-32 142.9 120 60.8
QL10p013674 Quercus lobata HOM05D004454 ORTHO05D005462 3.1e-32 142.9 121 61.2
Ca_00529_v3 Cicer arietinum L. HOM05D004454 ORTHO05D005462 4.0e-32 142.5 118 61.0
arahy.Tifrunner.gnm1.ann1.7D20F1 Arachis hypogaea HOM05D004454 ORTHO05D005462 8.9e-32 141.4 120 61.7
Dinv02657 Davidia involucrata HOM05D004454 ORTHO05D005462 1.2e-31 141.0 121 61.2
Atru.chr9.2393 Acer truncatum HOM05D004454 ORTHO05D005462 1.5e-31 140.6 121 61.2
MBI04_g34104_MAGBIO Magnolia biondii HOM05D004454 ORTHO05D005462 1.5e-31 140.6 121 59.5
ClCG01G014140 Citrullus lanatus HOM05D004454 ORTHO05D005462 2.0e-31 140.2 118 60.2
Peaxi162Scf00017g02211 Petunia axillaris HOM05D004454 ORTHO05D005462 2.0e-31 140.2 113 63.7
TWI60G0736 Tripterygium wilfordii HOM05D004454 ORTHO05D005462 2.0e-31 140.2 116 63.8
Eucgr.B00957 Eucalyptus grandis HOM05D004454 ORTHO05D005462 3.4e-31 139.4 118 61.0
CiPaw.12G022700 Carya illinoinensis HOM05D004454 ORTHO05D005462 4.4e-31 139.0 120 60.0
Lalb_Chr03g0031901 Lupinus albus HOM05D004454 ORTHO05D005462 4.4e-31 139.0 118 60.2
Lalb_Chr19g0133161 Lupinus albus HOM05D004454 ORTHO05D005462 4.4e-31 139.0 118 59.3
TAR629G2352 Trochodendron aralioides HOM05D004454 ORTHO05D005462 4.4e-31 139.0 121 59.5
MELO3C002234.2 Cucumis melo HOM05D004454 ORTHO05D005462 5.8e-31 138.7 118 58.5
CsaV3_1G008170 Cucumis sativus L. HOM05D004454 ORTHO05D005462 5.8e-31 138.7 118 58.5
HanXRQChr14g0438801 Helianthus annuus HOM05D004454 ORTHO05D005462 5.8e-31 138.7 117 60.7
Nn4g22938 Nelumbo nucifera HOM05D004454 ORTHO05D005462 5.8e-31 138.7 115 64.3
Nitab4.5_0000026g0380 Nicotiana tabacum HOM05D004454 ORTHO05D005462 5.8e-31 138.7 113 63.7
Nitab4.5_0003577g0020 Nicotiana tabacum HOM05D004454 ORTHO05D005462 5.8e-31 138.7 113 63.7
Glyma.01G216500 Glycine max HOM05D004454 ORTHO05D005462 7.6e-31 138.3 120 59.2
THA.LOC104799671 Tarenaya hassleriana HOM05D004454 ORTHO05D005462 7.6e-31 138.3 121 59.5
MSTRG.9661 Avicennia marina HOM05D004454 ORTHO05D005462 9.9e-31 137.9 112 64.3
Solyc03g113740.4 Solanum lycopersicum HOM05D004454 ORTHO05D005462 9.9e-31 137.9 114 62.3
Sopen03g032790 Solanum pennellii HOM05D004454 ORTHO05D005462 9.9e-31 137.9 114 62.3
TPR.G25821 Trifolium pratense HOM05D004454 ORTHO05D005462 1.3e-30 137.5 118 59.3
CAN.G853.25 Capsicum annuum HOM05D004454 ORTHO05D005462 1.7e-30 137.1 113 62.8
Haze_07431 Corylus avellana HOM05D004454 ORTHO05D005462 1.7e-30 137.1 121 57.9
Duzib084G0805 Durio zibethinus HOM05D004454 ORTHO05D005462 1.7e-30 137.1 118 61.0
GSVIVG01022319001 Vitis vinifera HOM05D004454 ORTHO05D005462 1.7e-30 137.1 120 60.0
Glyma.12G016100 Glycine max HOM05D004454 ORTHO05D005462 2.2e-30 136.7 120 56.7
ECA246G3380 Erigeron canadensis HOM05D004454 ORTHO05D005462 2.9e-30 136.3 119 57.1
BcaB01g00842 Brassica carinata HOM05D004454 ORTHO05D005462 3.8e-30 136.0 121 57.9
PSO832G1188 Papaver somniferum HOM05D004454 ORTHO05D005462 3.8e-30 136.0 120 58.3
DCAR_031479 Daucus carota HOM05D004454 ORTHO05D005462 4.9e-30 135.6 118 59.3
Phvul.007G021500 Phaseolus vulgaris HOM05D004454 ORTHO05D005462 4.9e-30 135.6 111 62.2
Ciclev10004829m.g Citrus clementina HOM05D004454 ORTHO05D005462 8.4e-30 134.8 120 60.0
Lj3g0012006 Lotus japonicus HOM05D004454 ORTHO05D005462 8.4e-30 134.8 118 60.2
PSO013G0161 Papaver somniferum HOM05D004454 ORTHO05D005462 8.4e-30 134.8 120 57.5
Psat4g146120 Pisum sativum HOM05D004454 ORTHO05D005462 8.4e-30 134.8 119 58.0
SalBow5G4570 Salvia bowleyana HOM05D004454 ORTHO05D005462 1.1e-29 134.4 111 63.1
TAR374G1062 Trochodendron aralioides HOM05D004454 ORTHO05D005462 1.1e-29 134.4 120 59.2
Thecc.03G002900 Theobroma cacao HOM05D004454 ORTHO05D005462 1.4e-29 134.0 118 58.5
AT3G48150 Arabidopsis thaliana HOM05D004454 ORTHO05D005462 1.9e-29 133.7 121 58.7
Cfa019062 Carpinus fangiana HOM05D004454 ORTHO05D005462 1.9e-29 133.7 120 57.5
Sed0026284 Sechium edule HOM05D004454 ORTHO05D005462 1.9e-29 133.7 118 59.3
AL5G27480 Arabidopsis lyrata HOM05D004454 ORTHO05D005462 2.4e-29 133.3 121 58.7
Cpa.g.sc35.32 Carica papaya HOM05D004454 ORTHO05D005462 2.4e-29 133.3 120 60.8
Thhalv10010239m.g Eutrema salsugineum HOM05D004454 ORTHO05D005462 2.4e-29 133.3 121 58.7
Gorai.011G255100 Gossypium raimondii HOM05D004454 ORTHO05D005462 2.4e-29 133.3 118 58.5
AUR62008292 Chenopodium quinoa HOM05D004454 ORTHO05D005462 3.2e-29 132.9 121 56.2
AUR62031054 Chenopodium quinoa HOM05D004454 ORTHO05D005462 3.2e-29 132.9 121 56.2
Oeu016330.1 Olea europaea HOM05D004454 ORTHO05D005462 4.2e-29 132.5 112 61.6
BcaC07g39296 Brassica carinata HOM05D004454 ORTHO05D005462 5.4e-29 132.1 121 56.2
A06p19550 Brassica napus HOM05D004454 ORTHO05D005462 5.4e-29 132.1 121 56.2
C08p23030 Brassica napus HOM05D004454 ORTHO05D005462 5.4e-29 132.1 121 56.2
BolC8t49941H Brassica oleracea HOM05D004454 ORTHO05D005462 5.4e-29 132.1 121 56.2
BraA06t25035Z Brassica rapa HOM05D004454 ORTHO05D005462 5.4e-29 132.1 121 56.2
Ciclev10019469m.g Citrus clementina HOM05D004454 ORTHO05D005462 5.4e-29 132.1 120 60.0
Gohir.A10G215100 Gossypium hirsutum HOM05D004454 ORTHO05D005462 5.4e-29 132.1 118 58.5
Migut.I00064 Erythranthe guttata HOM05D004454 ORTHO05D005462 7.1e-29 131.7 111 61.3
Sabra12G0053400 Salix brachista HOM05D004454 ORTHO05D005462 7.1e-29 131.7 115 58.3
Gohir.D10G224100 Gossypium hirsutum HOM05D004454 ORTHO05D005462 9.2e-29 131.3 118 58.5
Potri.012G075000 Populus trichocarpa HOM05D004454 ORTHO05D005462 9.2e-29 131.3 115 58.3
Sp5g13890 Schrenkiella parvula HOM05D004454 ORTHO05D005462 9.2e-29 131.3 121 57.9
HanXRQChr05g0155441 Helianthus annuus HOM05D004454 ORTHO05D005462 1.2e-28 131.0 116 56.9
EL10Ac5g10847 Beta vulgaris HOM05D004454 ORTHO05D005462 1.6e-28 130.6 121 56.2
Carub.0005s1425 Capsella rubella HOM05D004454 ORTHO05D005462 2.1e-28 130.2 121 57.0
BcaC09g49851 Brassica carinata HOM05D004454 ORTHO05D005462 3.5e-28 129.4 121 56.2
C01p31930 Brassica napus HOM05D004454 ORTHO05D005462 3.5e-28 129.4 121 56.2
BolC1t03163H Brassica oleracea HOM05D004454 ORTHO05D005462 3.5e-28 129.4 121 56.2
SGA_v2.0_scaffold467G52036 Striga asiatica HOM05D004454 ORTHO05D005462 3.5e-28 129.4 111 60.4
Medtr1g103750 Medicago truncatula HOM05D004454 ORTHO05D005462 4.6e-28 129.0 118 55.9
Ah.11g046280 Amaranthus hybridus HOM05D004454 ORTHO05D005462 1.3e-27 127.5 121 53.7
BcaB05g22913 Brassica carinata HOM05D004454 ORTHO05D005462 1.3e-27 127.5 121 55.4
A01p25460 Brassica napus HOM05D004454 ORTHO05D005462 2.3e-27 126.7 121 55.4
BraA01t02468Z Brassica rapa HOM05D004454 ORTHO05D005462 2.3e-27 126.7 121 55.4
unitig_0.g2210 Utricularia gibba HOM05D004454 ORTHO05D005462 3.0e-27 126.3 109 60.6
CARHR156870 Cardamine hirsuta HOM05D004454 ORTHO05D005462 5.1e-27 125.6 121 56.2
Aqoxy3G03142 Aquilegia oxysepala HOM05D004454 ORTHO05D005462 6.6e-27 125.2 117 56.4
Medtr8g021140 Medicago truncatula HOM05D004454 ORTHO05D005462 1.9e-26 123.6 123 52.8
Nn3g17037 Nelumbo nucifera HOM05D004454 ORTHO05D005462 2.5e-26 123.2 103 63.1
HPP92_012132 Vanilla planifolia HOM05D004454 ORTHO05D005462 2.8e-25 119.8 120 50.0
Zm00001eb249420 Zea mays HOM05D004454 ORTHO05D005462 3.1e-24 116.3 121 52.1
Hund02707 Selenicereus undatus HOM05D004454 ORTHO05D005462 5.3e-24 115.5 114 53.5
CDE04G0088 Ceratophyllum demersum HOM05D004454 ORTHO05D005462 6.9e-24 115.2 118 53.4
Dinv13132 Davidia involucrata HOM05D004454 ORTHO05D005462 6.9e-24 115.2 98 62.2
COL.COLO4_21447 Corchorus olitorius HOM05D000359 ORTHO05D000251 1.7e-22 110.5 97 59.8
FAN22G0042 Fragaria x ananassa HOM05D004454 ORTHO05D005462 4.9e-22 109.0 109 62.4
Os02g0656300 Oryza sativa ssp. japonica HOM05D004454 ORTHO05D005462 4.9e-22 109.0 116 52.6
CDE12G0785 Ceratophyllum demersum HOM05D004454 ORTHO05D005462 1.1e-21 107.8 109 54.1
Sc04g0002160 Simmondsia chinensis HOM05D004454 ORTHO05D005462 7.1e-21 105.1 99 54.5
ATR0057G034 Amborella trichopoda HOM05D004454 ORTHO05D005462 2.1e-20 103.6 109 50.5
SHI46877 Sapria himalayana HOM05D004454 ORTHO05D005462 6.0e-20 102.1 107 52.3
Aa31LG4G16750 Aethionema arabicum HOM05D004454 ORTHO05D005462 7.8e-20 101.7 99 56.6
MBI01_g33693_MAGBIO Magnolia biondii HOM05D004454 ORTHO05D005462 1.3e-19 100.9 164 39.0
COL.COLO4_19778 Corchorus olitorius HOM05D004454 ORTHO05D005462 1.7e-19 100.5 127 47.2
SEGI_02939 Sequoiadendron giganteum HOM05D004454 ORTHO05D005462 1.9e-18 97.1 109 43.1
Mapoly0091s0003 Marchantia polymorpha HOM05D004454 ORTHO05D005462 2.8e-17 93.2 118 45.8
PGSC0003DMG400024579 Solanum tuberosum HOM05D004454 ORTHO05D005462 2.8e-17 93.2 63 68.3
AagrBONN_evm.TU.Sc2ySwM_368.1566 Anthoceros agrestis HOM05D004454 ORTHO05D005462 1.2e-15 87.8 114 45.6
Pp3c11_17870 Physcomitrium patens HOM05D004454 ORTHO05D005462 1.2e-15 87.8 118 42.4
SMO147G0289 Selaginella moellendorffii HOM05D004454 ORTHO05D005462 9.9e-15 84.7 112 41.1
Cc04_g15930 Coffea canephora HOM05D004454 ORTHO05D005462 4.9e-14 82.4 109 46.8
CBR_g45228 Chara braunii HOM05D004454 ORTHO05D005462 1.1e-10 71.2 112 39.3
Cre16.g681578 Chlamydomonas reinhardtii HOM05D004454 ORTHO05D005462 1.2e-07 61.2 116 36.2
Medtr8g447330 Medicago truncatula HOM05D004454 ORTHO05D005462 4.5e-07 59.3 63 46.0
MCO11G723 Micromonas commoda HOM05D004454 ORTHO05D005462 1.3e-06 57.8 119 30.3


User provided reference genes

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