Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G3175 Fragaria x ananassa HOM05D005728 ORTHO05D005733 3.2e-69 265.0 137 100.0
FAN16G2914 Fragaria x ananassa HOM05D005728 ORTHO05D005733 1.0e-67 260.0 137 98.5
FAN25G2087 Fragaria x ananassa HOM05D005728 ORTHO05D005733 5.1e-67 257.7 137 97.1
FvH4_3g32270 Fragaria vesca HOM05D005728 ORTHO05D005733 6.7e-67 257.3 137 97.1
FAN11G0683 Fragaria x ananassa HOM05D005728 ORTHO05D005733 6.7e-67 257.3 137 97.1
RcHm_v2.0_Chr5g0059071 Rosa chinensis HOM05D005728 ORTHO05D005733 4.5e-63 244.6 137 92.0
MD03G1117800 Malus domestica HOM05D005728 ORTHO05D005733 5.0e-46 188.0 137 67.9
Prupe.6G101500 Prunus persica HOM05D005728 ORTHO05D005733 5.7e-42 174.5 131 69.5
MD11G1136100 Malus domestica HOM05D005728 ORTHO05D005733 5.3e-40 167.9 137 62.8
CiPaw.13G113100 Carya illinoinensis HOM05D005728 ORTHO05D005733 6.9e-40 167.5 128 66.4
QL01p022229 Quercus lobata HOM05D005728 ORTHO05D005733 2.0e-39 166.0 134 61.9
Duzib150G0774 Durio zibethinus HOM05D005728 ORTHO05D005733 1.4e-37 159.8 134 60.4
Phvul.005G135400 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 5.5e-37 157.9 117 66.7
Duzib168G0076 Durio zibethinus HOM05D005728 ORTHO05D005733 1.8e-35 152.9 137 59.1
Glyma.12G172600 Glycine max HOM05D005728 ORTHO05D005733 6.7e-35 151.0 121 62.0
Glyma.12G067500 Glycine max HOM05D005728 ORTHO05D005733 4.4e-34 148.3 130 58.5
Thecc.09G340800 Theobroma cacao HOM05D005728 ORTHO05D005733 4.4e-34 148.3 127 58.3
VMungo1080G1182 Vigna mungo HOM05D005728 ORTHO05D005733 4.4e-34 148.3 129 60.5
Eucgr.B02498 Eucalyptus grandis HOM05D005728 ORTHO05D005733 9.7e-34 147.1 135 54.1
PGR102G3095 Punica granatum HOM05D005728 ORTHO05D005733 9.7e-34 147.1 128 58.6
CSS0032457 Camellia sinensis var. sinensis HOM05D005728 ORTHO05D005733 3.7e-33 145.2 126 60.3
Haze_23825 Corylus avellana HOM05D005728 ORTHO05D005733 3.7e-33 145.2 135 59.3
Hma1.2p1_0058F.1_g032530 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 3.7e-33 145.2 129 60.5
Sed0004216 Sechium edule HOM05D005728 ORTHO05D005733 3.7e-33 145.2 133 54.9
MELO3C020692.2 Cucumis melo HOM05D005728 ORTHO05D005733 4.8e-33 144.8 130 57.7
Ciclev10029550m.g Citrus clementina HOM05D005728 ORTHO05D005733 6.3e-33 144.4 129 56.6
Glyma.13G326000 Glycine max HOM05D005728 ORTHO05D005733 6.3e-33 144.4 117 62.4
Gohir.D05G102800 Gossypium hirsutum HOM05D005728 ORTHO05D005733 6.3e-33 144.4 135 57.0
TAR629G0455 Trochodendron aralioides HOM05D005728 ORTHO05D005733 1.1e-32 143.7 134 56.0
Sed0003209 Sechium edule HOM05D005728 ORTHO05D005733 1.4e-32 143.3 136 52.9
Phvul.011G079200 Phaseolus vulgaris HOM05D005728 ORTHO05D005733 2.4e-32 142.5 131 55.7
Glyma.11G146600 Glycine max HOM05D005728 ORTHO05D005733 5.3e-32 141.4 130 55.4
Gorai.009G107100 Gossypium raimondii HOM05D005728 ORTHO05D005733 5.3e-32 141.4 134 56.7
arahy.Tifrunner.gnm1.ann1.X5FS8C Arachis hypogaea HOM05D005728 ORTHO05D005733 9.1e-32 140.6 129 58.1
Psat5g279440 Pisum sativum HOM05D005728 ORTHO05D005733 9.1e-32 140.6 131 56.5
Rhsim01G0216600 Rhododendron simsii HOM05D005728 ORTHO05D005733 9.1e-32 140.6 126 54.0
TPR.G11537 Trifolium pratense HOM05D005728 ORTHO05D005733 1.2e-31 140.2 135 58.5
TWI79G1513 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 4.5e-31 138.3 133 54.1
Gohir.A05G103100 Gossypium hirsutum HOM05D005728 ORTHO05D005733 5.9e-31 137.9 134 55.2
Lj3g0009869 Lotus japonicus HOM05D005728 ORTHO05D005733 5.9e-31 137.9 129 53.5
Potri.004G211000 Populus trichocarpa HOM05D005728 ORTHO05D005733 2.9e-30 135.6 136 52.2
Lalb_Chr19g0137271 Lupinus albus HOM05D005728 ORTHO05D005733 5.0e-30 134.8 130 56.2
TWI31G0058 Tripterygium wilfordii HOM05D005728 ORTHO05D005733 5.0e-30 134.8 132 53.0
VMungo0403G0001 Vigna mungo HOM05D005728 ORTHO05D005733 6.5e-30 134.4 129 54.3
Ca_01413_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 8.5e-30 134.0 129 58.1
Gohir.D03G134400 Gossypium hirsutum HOM05D005728 ORTHO05D005733 8.5e-30 134.0 135 55.6
Gohir.D08G215300 Gossypium hirsutum HOM05D005728 ORTHO05D005733 1.4e-29 133.3 136 52.9
TPR.G15560 Trifolium pratense HOM05D005728 ORTHO05D005733 3.2e-29 132.1 121 54.5
Gorai.004G228900 Gossypium raimondii HOM05D005728 ORTHO05D005733 7.2e-29 131.0 136 52.2
Lalb_Chr14g0374671 Lupinus albus HOM05D005728 ORTHO05D005733 9.4e-29 130.6 132 56.8
Cfa011317 Carpinus fangiana HOM05D005728 ORTHO05D005733 1.2e-28 130.2 135 54.8
Gohir.A08G197900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 2.1e-28 129.4 136 52.2
Medtr2g094210 Medicago truncatula HOM05D005728 ORTHO05D005733 2.1e-28 129.4 143 55.2
CANSAT54G0421 Cannabis sativa HOM05D005728 ORTHO05D005733 4.7e-28 128.3 128 56.2
Potri.009G013800 Populus trichocarpa HOM05D005728 ORTHO05D005733 6.1e-28 127.9 138 52.9
Manes.04G021300 Manihot esculenta HOM05D005728 ORTHO05D005733 8.0e-28 127.5 128 53.9
Cpa.g.sc216.7 Carica papaya HOM05D005728 ORTHO05D005733 1.0e-27 127.1 131 59.5
CsaV3_1G033730 Cucumis sativus L. HOM05D005728 ORTHO05D005733 1.4e-27 126.7 130 52.3
Medtr4g059310 Medicago truncatula HOM05D005728 ORTHO05D005733 5.2e-27 124.8 128 53.1
Gohir.A03G033900 Gossypium hirsutum HOM05D005728 ORTHO05D005733 6.7e-27 124.4 135 53.3
Sabra04G0142500 Salix brachista HOM05D005728 ORTHO05D005733 6.7e-27 124.4 137 46.0
Lsat_1_v5_gn_1_65300 Lactuca sativa HOM05D005728 ORTHO05D005733 8.8e-27 124.0 129 48.8
ECA248G1213 Erigeron canadensis HOM05D005728 ORTHO05D005733 1.5e-26 123.2 132 49.2
Atru.chr3.3629 Acer truncatum HOM05D005728 ORTHO05D005733 2.0e-26 122.9 141 50.4
THA.LOC104800607 Tarenaya hassleriana HOM05D005728 ORTHO05D005733 9.7e-26 120.6 131 50.4
Ca_19255_v3 Cicer arietinum L. HOM05D005728 ORTHO05D005733 4.8e-25 118.2 132 54.5
MBI07_g19310_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 4.8e-25 118.2 143 50.3
Duzib170G0319 Durio zibethinus HOM05D005728 ORTHO05D005733 8.2e-25 117.5 121 52.1
Psat7g225080 Pisum sativum HOM05D005728 ORTHO05D005733 1.1e-24 117.1 129 51.9
PSO063G1604 Papaver somniferum HOM05D005728 ORTHO05D005733 1.4e-24 116.7 149 49.0
PSO339G2100 Papaver somniferum HOM05D005728 ORTHO05D005733 3.1e-24 115.5 149 49.0
Rhsim01G0216400 Rhododendron simsii HOM05D005728 ORTHO05D005733 5.3e-24 114.8 104 55.8
RhsimUnG0058600 Rhododendron simsii HOM05D005728 ORTHO05D005733 5.3e-24 114.8 96 57.3
HanXRQChr01g0016901 Helianthus annuus HOM05D005728 ORTHO05D005733 7.0e-24 114.4 135 46.7
Ah.01g002910 Amaranthus hybridus HOM05D005728 ORTHO05D005733 1.2e-23 113.6 130 45.4
Aqoxy1G01237 Aquilegia oxysepala HOM05D005728 ORTHO05D005733 2.0e-23 112.8 142 49.3
Nn2g10793 Nelumbo nucifera HOM05D005728 ORTHO05D005733 4.5e-23 111.7 137 46.0
EL10Ac9g22516 Beta vulgaris HOM05D005728 ORTHO05D005733 1.3e-22 110.2 128 46.9
Lj3g0014252 Lotus japonicus HOM05D005728 ORTHO05D005733 1.7e-22 109.8 100 61.0
Sc15g0002200 Simmondsia chinensis HOM05D005728 ORTHO05D005733 3.8e-22 108.6 124 46.8
DCAR_018811 Daucus carota HOM05D005728 ORTHO05D005733 8.5e-22 107.5 131 43.5
ECA238G1730 Erigeron canadensis HOM05D005728 ORTHO05D005733 8.5e-22 107.5 128 50.0
Manes.11G145200 Manihot esculenta HOM05D005728 ORTHO05D005733 1.9e-21 106.3 112 56.2
Cc01_g11120 Coffea canephora HOM05D005728 ORTHO05D005733 2.5e-21 105.9 125 47.2
Peaxi162Scf00270g00082 Petunia axillaris HOM05D005728 ORTHO05D005733 4.2e-21 105.1 134 46.3
Sabra09G0007800 Salix brachista HOM05D005728 ORTHO05D005733 3.6e-20 102.1 117 47.9
PGSC0003DMG400008077 Solanum tuberosum HOM05D005728 ORTHO05D005733 6.1e-20 101.3 140 43.6
Nitab4.5_0000650g0250 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.8e-19 99.8 141 44.7
AUR62039639 Chenopodium quinoa HOM05D005728 ORTHO05D005733 5.2e-19 98.2 132 44.7
Ah.01g014340 Amaranthus hybridus HOM05D005728 ORTHO05D005733 8.8e-19 97.4 136 42.6
Nitab4.5_0012712g0010 Nicotiana tabacum HOM05D005728 ORTHO05D005733 8.8e-19 97.4 141 44.7
CiPaw.14G080700 Carya illinoinensis HOM05D005728 ORTHO05D005733 1.2e-18 97.1 111 52.3
Hma1.2p1_0055F.1_g031560 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 1.5e-18 96.7 109 49.5
Sp4g11230 Schrenkiella parvula HOM05D005728 ORTHO05D005733 2.0e-18 96.3 111 46.8
A07p18980 Brassica napus HOM05D005728 ORTHO05D005733 2.6e-18 95.9 111 47.7
BraA07t29603Z Brassica rapa HOM05D005728 ORTHO05D005733 2.6e-18 95.9 111 47.7
Solyc11g069420.2 Solanum lycopersicum HOM05D005728 ORTHO05D005733 2.6e-18 95.9 130 43.8
Hma1.2p1_2468F.1_g322665 Hydrangea macrophylla HOM05D005728 ORTHO05D005733 4.4e-18 95.1 109 48.6
AUR62024979 Chenopodium quinoa HOM05D005728 ORTHO05D005733 7.5e-18 94.4 138 42.8
Thhalv10017443m.g Eutrema salsugineum HOM05D005728 ORTHO05D005733 7.5e-18 94.4 115 48.7
Sopen11g028140 Solanum pennellii HOM05D005728 ORTHO05D005733 7.5e-18 94.4 130 43.8
BcaB06g28212 Brassica carinata HOM05D005728 ORTHO05D005733 2.8e-17 92.4 111 48.6
CARHR121360 Cardamine hirsuta HOM05D005728 ORTHO05D005733 2.8e-17 92.4 116 50.0
Carub.0004s0935 Capsella rubella HOM05D005728 ORTHO05D005733 3.7e-17 92.0 116 46.6
Aa31LG5G7800 Aethionema arabicum HOM05D005728 ORTHO05D005733 1.1e-16 90.5 103 48.5
MBI10_g13404_MAGBIO Magnolia biondii HOM05D005728 ORTHO05D005733 1.4e-16 90.1 149 43.0
AL4G21610 Arabidopsis lyrata HOM05D005728 ORTHO05D005733 1.8e-16 89.7 115 45.2
Oeu059090.1 Olea europaea HOM05D005728 ORTHO05D005733 1.8e-16 89.7 126 42.9
A04p21550 Brassica napus HOM05D005728 ORTHO05D005733 4.1e-16 88.6 114 48.2
C04p22970 Brassica napus HOM05D005728 ORTHO05D005733 4.1e-16 88.6 111 46.8
BraA04t17719Z Brassica rapa HOM05D005728 ORTHO05D005733 4.1e-16 88.6 114 48.2
MSTRG.17803 Avicennia marina HOM05D005728 ORTHO05D005733 5.3e-16 88.2 124 45.2
AT2G28410 Arabidopsis thaliana HOM05D005728 ORTHO05D005733 1.2e-15 87.0 115 45.2
BcaC02g08173 Brassica carinata HOM05D005728 ORTHO05D005733 1.2e-15 87.0 114 48.2
C04p57650 Brassica napus HOM05D005728 ORTHO05D005733 1.2e-15 87.0 114 48.2
BolC4t27283H Brassica oleracea HOM05D005728 ORTHO05D005733 1.6e-15 86.7 114 47.4
BolC4t23791H Brassica oleracea HOM05D005728 ORTHO05D005733 2.7e-15 85.9 111 45.9
Gorai.003G141500 Gossypium raimondii HOM05D005728 ORTHO05D005733 2.2e-14 82.8 101 48.5
SGA_v2.0_scaffold2G00890 Striga asiatica HOM05D005728 ORTHO05D005733 5.5e-13 78.2 129 41.1
Migut.N02604 Erythranthe guttata HOM05D005728 ORTHO05D005733 1.6e-12 76.6 135 38.5
arahy.Tifrunner.gnm1.ann1.5L1A31 Arachis hypogaea HOM05D005728 ORTHO05D005733 3.6e-12 75.5 123 37.4
SalBow3G1069 Salvia bowleyana HOM05D005728 ORTHO05D005733 3.6e-12 75.5 125 40.8
BraA10t43864Z Brassica rapa HOM05D010860 ORTHO05D005733 4.7e-12 75.1 140 40.0
Oeu002871.1 Olea europaea HOM05D005728 ORTHO05D005733 1.0e-11 73.9 109 41.3
Oeu030182.1 Olea europaea HOM05D005728 ORTHO05D005733 1.4e-11 73.6 112 42.0
AT5G60650 Arabidopsis thaliana HOM05D010860 ORTHO05D005733 1.8e-11 73.2 143 36.4
BcaB08g36363 Brassica carinata HOM05D010860 ORTHO05D005733 1.8e-11 73.2 144 40.3
AL8G37240 Arabidopsis lyrata HOM05D010860 ORTHO05D005733 5.2e-11 71.6 121 35.5
A03p11060 Brassica napus HOM05D010860 ORTHO05D005733 8.8e-11 70.9 142 40.8
BraA03t10420Z Brassica rapa HOM05D010860 ORTHO05D005733 8.8e-11 70.9 142 40.8
Thhalv10014945m.g Eutrema salsugineum HOM05D010860 ORTHO05D005733 8.8e-11 70.9 140 35.7
BcaB01g04667 Brassica carinata HOM05D010860 ORTHO05D005733 1.5e-10 70.1 127 37.8
Nitab4.5_0000106g0140 Nicotiana tabacum HOM05D005728 ORTHO05D005733 1.5e-10 70.1 132 34.1
ATR0048G010 Amborella trichopoda HOM05D005728 ORTHO05D005733 2.6e-10 69.3 129 38.0
A10p17850 Brassica napus HOM05D010860 ORTHO05D005733 2.6e-10 69.3 144 38.2
BolC9t58211H Brassica oleracea HOM05D010860 ORTHO05D005733 4.4e-10 68.6 135 40.7
C09p53380 Brassica napus HOM05D010860 ORTHO05D005733 5.7e-10 68.2 135 40.0
Carub.0008s2133 Capsella rubella HOM05D010860 ORTHO05D005733 5.7e-10 68.2 139 37.4
arahy.Tifrunner.gnm1.ann1.C3ZM5V Arachis hypogaea HOM05D005728 ORTHO05D005733 1.3e-09 67.0 73 45.2
BcaC04g19726 Brassica carinata HOM05D010860 ORTHO05D005733 2.2e-09 66.2 135 40.0
CARHR274330 Cardamine hirsuta HOM05D010860 ORTHO05D005733 2.7e-07 59.3 141 32.6
Oeu001270.1 Olea europaea HOM05D005728 ORTHO05D005733 5.0e-06 55.1 110 38.2


User provided reference genes

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