Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 3.9e-204 714.5 355 100.0
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 9.1e-201 703.4 355 98.3
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 2.6e-200 701.8 355 98.0
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.0e-199 699.9 355 97.7
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 1.0e-188 663.3 333 97.6
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 6.3e-186 654.1 365 89.6
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 4.6e-152 541.6 376 76.1
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 1.3e-151 540.0 376 76.9
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 1.6e-141 506.5 376 72.3
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 3.6e-141 505.4 365 74.2
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 8.7e-135 484.2 370 71.6
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 1.5e-134 483.4 378 69.6
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 3.3e-134 482.3 370 70.3
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 4.3e-134 481.9 372 70.2
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 8.1e-133 477.6 353 73.1
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 1.8e-132 476.5 354 71.8
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 3.1e-132 475.7 372 69.6
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 2.0e-131 473.0 372 68.8
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 2.0e-131 473.0 378 69.0
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 9.9e-131 470.7 376 70.7
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 2.2e-130 469.5 369 69.4
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 2.4e-129 466.1 368 69.0
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 2.1e-128 463.0 377 65.8
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 3.5e-128 462.2 422 62.6
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 4.6e-128 461.8 375 68.0
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 3.0e-127 459.1 384 66.7
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 3.9e-127 458.8 355 70.4
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 2.5e-126 456.1 373 67.6
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 2.8e-125 452.6 377 66.6
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 2.8e-125 452.6 376 67.0
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 3.7e-125 452.2 376 66.0
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 4.8e-125 451.8 394 64.2
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 8.1e-125 451.1 377 66.3
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 1.1e-124 450.7 379 67.8
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 1.1e-124 450.7 351 68.9
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 1.4e-124 450.3 378 65.6
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 4.0e-124 448.7 376 66.5
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 5.3e-124 448.4 372 68.0
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 2.0e-123 446.4 415 63.4
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 4.5e-123 445.3 355 68.5
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 4.5e-123 445.3 418 63.6
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 9.9e-123 444.1 363 66.4
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.8e-122 442.2 390 64.9
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 1.1e-121 440.7 377 66.0
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.4e-121 440.3 378 65.3
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 2.5e-121 439.5 373 66.8
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 3.2e-121 439.1 367 64.9
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 5.5e-121 438.3 372 65.3
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 9.3e-121 437.6 347 68.0
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 9.3e-121 437.6 344 67.7
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 1.2e-120 437.2 373 66.5
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 4.6e-120 435.3 348 67.5
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 7.9e-120 434.5 353 67.1
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 5.1e-119 431.8 349 65.0
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 6.7e-119 431.4 373 66.2
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 1.5e-118 430.3 354 65.3
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 7.4e-118 427.9 382 64.4
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 9.6e-118 427.6 353 66.3
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 2.1e-117 426.4 353 65.4
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 2.1e-117 426.4 370 66.5
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 2.8e-117 426.0 359 65.7
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 2.8e-117 426.0 380 62.1
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 6.2e-117 424.9 348 67.2
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 6.2e-117 424.9 360 66.7
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 8.2e-117 424.5 379 64.1
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 1.5e-115 420.2 376 63.6
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 2.0e-115 419.9 441 57.1
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 3.4e-115 419.1 377 64.2
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 1.0e-114 417.5 425 59.3
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 1.3e-114 417.2 377 62.6
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 1.7e-114 416.8 351 64.4
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 2.2e-114 416.4 373 63.5
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 6.5e-114 414.8 381 62.7
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 1.4e-113 413.7 344 65.1
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 7.1e-113 411.4 377 62.3
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 7.1e-113 411.4 371 62.3
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 9.3e-113 411.0 354 65.0
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 3.5e-112 409.1 398 60.8
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 2.3e-111 406.4 354 63.3
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 3.0e-111 406.0 351 64.4
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 3.0e-111 406.0 370 61.9
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 3.0e-111 406.0 365 64.1
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 2.4e-108 396.4 354 61.6
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 3.1e-108 396.0 373 60.6
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 4.1e-108 395.6 365 63.3
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 2.0e-107 393.3 368 60.3
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 2.0e-107 393.3 352 62.5
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 1.3e-106 390.6 361 61.8
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 2.2e-106 389.8 353 62.3
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 2.2e-106 389.8 368 60.1
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 2.2e-106 389.8 375 61.9
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 6.5e-106 388.3 359 60.4
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 1.4e-103 380.6 363 61.2
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 2.3e-103 379.8 365 60.8
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 5.1e-103 378.6 369 59.6
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 8.2e-101 371.3 357 59.9
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 1.8e-100 370.2 415 54.7
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 5.3e-100 368.6 374 58.0
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 1.2e-99 367.5 347 61.1
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 6.5e-98 361.7 386 57.8
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 6.5e-98 361.7 304 66.1
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 7.2e-97 358.2 345 60.6
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 1.2e-96 357.5 367 57.2
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 2.1e-96 356.7 354 58.5
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 4.7e-96 355.5 386 56.7
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 6.1e-96 355.1 361 57.9
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 7.9e-96 354.8 386 56.2
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 8.8e-95 351.3 344 59.6
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 2.0e-94 350.1 386 55.7
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 2.0e-94 350.1 386 55.7
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 3.3e-94 349.4 282 66.7
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 1.1e-92 344.4 341 59.5
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 4.1e-92 342.4 344 58.7
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 3.5e-91 339.3 385 54.3
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 3.5e-91 339.3 501 46.3
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 4.5e-91 339.0 341 58.7
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 2.1e-88 330.1 375 55.7
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 2.1e-88 330.1 282 66.0
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 3.6e-88 329.3 336 58.9
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 1.0e-87 327.8 365 55.6
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 6.7e-87 325.1 475 46.3
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.4e-84 317.4 394 50.3
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 1.8e-84 317.0 318 59.1
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 2.6e-83 313.2 314 60.2
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 2.3e-79 300.1 284 58.8
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 5.2e-79 298.9 396 47.2
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 7.7e-75 285.0 396 47.0
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 6.3e-69 265.4 402 44.8
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 1.1e-68 264.6 271 58.3
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 8.0e-64 248.4 166 74.7
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 1.2e-62 244.6 361 46.8
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 2.0e-62 243.8 247 59.1
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 2.0e-59 233.8 314 51.3
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 2.0e-59 233.8 314 51.3
CiPaw.09G137600 Carya illinoinensis HOM05D004432 ORTHO05D005427 2.9e-58 229.9 188 71.3
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 3.0e-50 203.4 221 54.3
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 1.1e-49 201.4 119 81.5
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 5.2e-47 192.6 99 91.9
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 5.2e-47 192.6 99 91.9
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 2.6e-46 190.3 311 45.7
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 1.3e-45 188.0 684 29.4
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 7.1e-44 182.2 227 48.0
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 1.0e-42 178.3 192 53.1
CARHR030510 Cardamine hirsuta HOM05D004432 ORTHO05D005427 3.3e-41 173.3 194 54.1
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 4.7e-40 169.5 93 87.1
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 6.2e-40 169.1 218 52.3
SEGI_09071 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.5e-30 137.9 85 83.5
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 2.9e-29 133.7 350 33.1
Pp3c19_17160 Physcomitrium patens HOM05D004432 ORTHO05D005427 1.2e-27 128.3 141 58.2
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 6.0e-27 125.9 70 81.4
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 6.2e-24 115.9 143 49.7
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 1.4e-23 114.8 94 56.4
Dinv01000 Davidia involucrata HOM05D004432 ORTHO05D005427 1.2e-22 111.7 186 41.9
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 1.5e-22 111.3 90 52.2
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 4.4e-22 109.8 65 80.0
CAN.G958.2 Capsicum annuum HOM05D004432 ORTHO05D005427 1.3e-18 98.2 72 63.9
Lj1g0003853 Lotus japonicus HOM05D004432 ORTHO05D005427 5.1e-10 69.7 63 57.1
Psat6g089360 Pisum sativum HOM05D004432 ORTHO05D005427 5.1e-10 69.7 98 49.0
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 3.7e-08 63.5 74 48.6
TWI15G0530 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.0e-05 55.5 47 59.6


User provided reference genes

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