Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G3075 Fragaria x ananassa HOM05D005647 ORTHO05D006968 0.0e+00 1264.6 720 100.0
FAN25G1201 Fragaria x ananassa HOM05D005647 ORTHO05D006968 0.0e+00 1238.0 720 97.9
FvH4_3g34550 Fragaria vesca HOM05D005647 ORTHO05D006968 0.0e+00 1221.1 720 96.9
FAN16G2614 Fragaria x ananassa HOM05D005647 ORTHO05D006968 0.0e+00 1200.7 720 91.7
FAN11G0841 Fragaria x ananassa HOM05D005647 ORTHO05D006968 0.0e+00 1154.4 680 97.2
RcHm_v2.0_Chr5g0062191 Rosa chinensis HOM05D005647 ORTHO05D006968 1.1e-298 1029.6 726 84.4
RcHm_v2.0_Chr4g0385531 Rosa chinensis HOM05D005647 ORTHO05D006968 7.3e-298 1026.9 726 83.9
MD11G1117900 Malus domestica HOM05D005647 ORTHO05D006968 3.5e-215 752.3 738 57.3
Prupe.6G088000 Prunus persica HOM05D005647 ORTHO05D006968 8.6e-198 694.5 705 56.3
Cfa011418 Carpinus fangiana HOM05D005647 ORTHO05D006968 4.0e-163 579.3 747 50.2
QL03p069904 Quercus lobata HOM05D005647 ORTHO05D006968 1.5e-149 534.3 737 45.5
GSVIVG01025064001 Vitis vinifera HOM05D005647 ORTHO05D006968 4.9e-145 519.2 747 44.7
CiPaw.13G102300 Carya illinoinensis HOM05D005647 ORTHO05D006968 6.4e-145 518.8 697 47.2
Haze_23998 Corylus avellana HOM05D005647 ORTHO05D006968 5.5e-144 515.8 716 46.1
COL.COLO4_18417 Corchorus olitorius HOM05D005647 ORTHO05D006968 6.0e-135 485.7 709 42.9
Thecc.09G331200 Theobroma cacao HOM05D005647 ORTHO05D006968 7.9e-135 485.3 764 43.6
Gohir.A05G099200 Gossypium hirsutum HOM05D005647 ORTHO05D006968 1.0e-134 485.0 464 57.5
Ciclev10027867m.g Citrus clementina HOM05D005647 ORTHO05D006968 1.8e-134 484.2 796 40.2
Gorai.009G103000 Gossypium raimondii HOM05D005647 ORTHO05D006968 1.8e-134 484.2 755 42.5
Duzib150G0770 Durio zibethinus HOM05D005647 ORTHO05D006968 1.5e-133 481.1 775 42.8
Gohir.D05G099100 Gossypium hirsutum HOM05D005647 ORTHO05D006968 2.8e-132 476.9 768 41.9
Atru.chr3.3782 Acer truncatum HOM05D005647 ORTHO05D006968 3.4e-130 469.9 843 40.0
CANSAT54G2414 Cannabis sativa HOM05D005647 ORTHO05D006968 7.7e-130 468.8 437 59.3
TWI75G1819 Tripterygium wilfordii HOM05D005647 ORTHO05D006968 7.2e-128 462.2 373 62.2
Rhsim01G0223800 Rhododendron simsii HOM05D005647 ORTHO05D006968 4.3e-125 453.0 756 41.7
Actinidia00810 Actinidia chinensis HOM05D005647 ORTHO05D006968 2.2e-124 450.7 744 41.8
Lj1A178T39 Lonicera japonica HOM05D005647 ORTHO05D006968 4.1e-123 446.4 448 57.4
ClCG02G020580 Citrullus lanatus HOM05D005647 ORTHO05D006968 2.9e-121 440.3 376 59.8
Actinidia03769 Actinidia chinensis HOM05D005647 ORTHO05D006968 5.1e-118 429.5 707 40.7
Sed0021109 Sechium edule HOM05D005647 ORTHO05D006968 5.1e-118 429.5 745 40.3
Lsat_1_v5_gn_5_167021 Lactuca sativa HOM05D005647 ORTHO05D006968 6.7e-118 429.1 360 61.4
Manes.04G028600 Manihot esculenta HOM05D005647 ORTHO05D006968 6.7e-118 429.1 327 67.0
AL8G36550 Arabidopsis lyrata HOM05D005647 ORTHO05D006968 8.8e-118 428.7 366 59.0
VMungo1080G1709 Vigna mungo HOM05D005647 ORTHO05D006968 3.3e-117 426.8 742 38.5
Nitab4.5_0008854g0020 Nicotiana tabacum HOM05D005647 ORTHO05D006968 5.7e-117 426.0 377 59.9
Nitab4.5_0000022g0330 Nicotiana tabacum HOM05D005647 ORTHO05D006968 7.4e-117 425.6 376 60.1
TAR623G0344 Trochodendron aralioides HOM05D005647 ORTHO05D006968 7.4e-117 425.6 464 52.2
Sopen06g001190 Solanum pennellii HOM05D005647 ORTHO05D006968 3.7e-116 423.3 377 57.8
Solyc06g005200.3 Solanum lycopersicum HOM05D005647 ORTHO05D006968 4.8e-116 422.9 377 57.8
PGSC0003DMG400033668 Solanum tuberosum HOM05D005647 ORTHO05D006968 4.8e-116 422.9 377 58.1
AT5G59980 Arabidopsis thaliana HOM05D005647 ORTHO05D006968 1.4e-115 421.4 358 60.1
Aa31LG1G12110 Aethionema arabicum HOM05D005647 ORTHO05D006968 1.8e-115 421.0 382 56.3
Glyma.13G196800 Glycine max HOM05D005647 ORTHO05D006968 2.4e-115 420.6 345 62.6
Lj3g0017565 Lotus japonicus HOM05D005647 ORTHO05D006968 2.4e-115 420.6 445 53.3
DCAR_005295 Daucus carota HOM05D005647 ORTHO05D006968 7.0e-115 419.1 335 64.5
Potri.009G025800 Populus trichocarpa HOM05D005647 ORTHO05D006968 1.2e-114 418.3 753 39.0
PSO447G0260 Papaver somniferum HOM05D005647 ORTHO05D006968 1.5e-114 417.9 344 63.1
Carub.0004s0912 Capsella rubella HOM05D005647 ORTHO05D006968 3.5e-114 416.8 433 51.5
Cc01_g12040 Coffea canephora HOM05D005647 ORTHO05D006968 3.5e-114 416.8 379 57.5
MELO3C025708.2 Cucumis melo HOM05D005647 ORTHO05D006968 4.5e-114 416.4 787 36.1
Cpa.g.sc139.4 Carica papaya HOM05D005647 ORTHO05D006968 7.7e-114 415.6 709 39.4
Lalb_Chr24g0394311 Lupinus albus HOM05D005647 ORTHO05D006968 2.9e-113 413.7 466 49.8
PSO541G4932 Papaver somniferum HOM05D005647 ORTHO05D006968 2.9e-113 413.7 448 52.9
Phvul.L002619 Phaseolus vulgaris HOM05D005647 ORTHO05D006968 2.9e-113 413.7 737 38.4
Sc14g0000850 Simmondsia chinensis HOM05D005647 ORTHO05D006968 3.8e-113 413.3 342 65.2
THA.LOC104809599 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 1.4e-112 411.4 424 51.7
Ca_01361_v3 Cicer arietinum L. HOM05D005647 ORTHO05D006968 4.2e-112 409.8 779 37.4
PGR119G0370 Punica granatum HOM05D005647 ORTHO05D006968 9.4e-112 408.7 333 61.9
TPR.G17867 Trifolium pratense HOM05D005647 ORTHO05D006968 2.7e-111 407.1 382 57.1
Medtr2g096090 Medicago truncatula HOM05D005647 ORTHO05D006968 3.6e-111 406.8 370 57.3
Psat5g282040 Pisum sativum HOM05D005647 ORTHO05D006968 1.0e-110 405.2 757 37.8
PSO675G6613 Papaver somniferum HOM05D005647 ORTHO05D006968 5.2e-110 402.9 329 62.3
TPR.G11621 Trifolium pratense HOM05D005647 ORTHO05D006968 8.8e-110 402.1 388 56.2
ECA248G2619 Erigeron canadensis HOM05D005647 ORTHO05D006968 1.5e-109 401.4 399 54.4
Hund18946 Selenicereus undatus HOM05D005647 ORTHO05D006968 1.5e-109 401.4 456 50.0
SGA_v2.0_scaffold61G21232 Striga asiatica HOM05D005647 ORTHO05D006968 1.3e-108 398.3 355 58.3
Thhalv10012856m.g Eutrema salsugineum HOM05D005647 ORTHO05D006968 1.7e-108 397.9 426 52.1
MBI14_g34527_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 1.7e-108 397.9 447 53.0
HanXRQChr14g0429211 Helianthus annuus HOM05D005647 ORTHO05D006968 2.2e-108 397.5 341 60.7
Peaxi162Scf00006g01310 Petunia axillaris HOM05D005647 ORTHO05D006968 2.2e-108 397.5 408 53.9
MSTRG.21166 Avicennia marina HOM05D005647 ORTHO05D006968 4.8e-108 396.4 374 57.5
Ah.15g096320 Amaranthus hybridus HOM05D005647 ORTHO05D006968 1.2e-106 391.7 346 58.7
CAN.G200.2 Capsicum annuum HOM05D005647 ORTHO05D006968 2.6e-106 390.6 430 50.7
Eucgr.A02758 Eucalyptus grandis HOM05D005647 ORTHO05D006968 3.5e-106 390.2 379 55.4
EL10Ac7g15937 Beta vulgaris HOM05D005647 ORTHO05D006968 4.5e-106 389.8 342 57.3
AUR62001855 Chenopodium quinoa HOM05D005647 ORTHO05D006968 5.0e-105 386.3 335 58.5
Migut.D02155 Erythranthe guttata HOM05D005647 ORTHO05D006968 3.2e-104 383.6 344 58.7
Sp6g21650 Schrenkiella parvula HOM05D005647 ORTHO05D006968 1.2e-103 381.7 380 55.3
A02p06680 Brassica napus HOM05D005647 ORTHO05D006968 3.6e-103 380.2 396 51.8
BcaC04g19653 Brassica carinata HOM05D005647 ORTHO05D006968 6.1e-103 379.4 366 56.0
C02p11970 Brassica napus HOM05D005647 ORTHO05D006968 6.1e-103 379.4 396 51.8
BolC9t58115H Brassica oleracea HOM05D005647 ORTHO05D006968 6.1e-103 379.4 366 56.0
BraA02t05750Z Brassica rapa HOM05D005647 ORTHO05D006968 6.1e-103 379.4 396 51.8
vmacro14498 Vaccinium macrocarpon HOM05D005647 ORTHO05D006968 8.0e-103 379.0 496 46.2
C09p52480 Brassica napus HOM05D005647 ORTHO05D006968 1.0e-102 378.6 366 56.0
Sabra09G0017200 Salix brachista HOM05D005647 ORTHO05D000187 3.0e-102 377.1 777 37.8
BcaB05g22600 Brassica carinata HOM05D005647 ORTHO05D006968 4.0e-102 376.7 347 57.6
BraA10t43800Z Brassica rapa HOM05D005647 ORTHO05D006968 5.2e-102 376.3 364 55.5
BolC2t07297H Brassica oleracea HOM05D005647 ORTHO05D006968 1.5e-101 374.8 369 55.8
Aqoxy4G03106 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 2.0e-101 374.4 351 56.4
A10p17190 Brassica napus HOM05D005647 ORTHO05D006968 2.6e-101 374.0 364 55.5
Aa31LG5G21920 Aethionema arabicum HOM05D005647 ORTHO05D006968 3.3e-101 373.6 311 60.8
unitig_736.g22430 Utricularia gibba HOM05D005647 ORTHO05D006968 7.5e-101 372.5 428 49.8
BcaB08g36205 Brassica carinata HOM05D005647 ORTHO05D006968 3.1e-99 367.1 467 46.0
THA.LOC104813123 Tarenaya hassleriana HOM05D005647 ORTHO05D006968 7.0e-99 365.9 333 57.4
ATR0787G117 Amborella trichopoda HOM05D005647 ORTHO05D006968 7.7e-98 362.5 362 52.5
Aqoxy4G03104_Aqoxy4G03103 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 7.7e-98 362.5 342 56.4
arahy.Tifrunner.gnm1.ann1.7X2355 Arachis hypogaea HOM05D005647 ORTHO05D006968 7.2e-96 355.9 393 48.9
arahy.Tifrunner.gnm1.ann1.W04KXW Arachis hypogaea HOM05D005647 ORTHO05D006968 6.1e-95 352.8 448 45.8
Oeu058515.3 Olea europaea HOM05D005647 ORTHO05D006968 1.8e-94 351.3 460 46.3
CDE08G0081 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 8.8e-94 349.0 292 59.2
SalBow3G2669 Salvia bowleyana HOM05D005647 ORTHO05D006968 2.6e-93 347.4 432 46.8
SalBow3G1239 Salvia bowleyana HOM05D005647 ORTHO05D006968 3.4e-93 347.1 432 46.8
CDE02G4018 Ceratophyllum demersum HOM05D005647 ORTHO05D006968 2.0e-90 337.8 292 57.5
arahy.Tifrunner.gnm1.ann1.S4SLQI Arachis hypogaea HOM05D005647 ORTHO05D006968 2.1e-87 327.8 462 42.9
arahy.Tifrunner.gnm1.ann1.ZDAZ4C Arachis hypogaea HOM05D005647 ORTHO05D006968 2.4e-83 314.3 461 41.6
Gorai.013G129300 Gossypium raimondii HOM05D005647 ORTHO05D006968 5.0e-81 306.6 240 65.8
Nn2g13828 Nelumbo nucifera HOM05D005647 ORTHO05D006968 1.6e-66 258.5 205 62.0
VMungo1127G1784 Vigna mungo HOM05D005647 ORTHO05D006968 1.0e-65 255.8 195 64.6
AUR62009649 Chenopodium quinoa HOM05D005647 ORTHO05D006968 2.3e-65 254.6 237 56.1
Mapoly0041s0094 Marchantia polymorpha HOM05D005647 ORTHO05D006968 4.3e-64 250.4 378 38.9
Pp3c23_18130 Physcomitrium patens HOM05D005647 ORTHO05D006968 4.4e-61 240.4 269 45.7
SEGI_32841 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 5.1e-57 226.9 235 47.2
Os12g0175900 Oryza sativa ssp. japonica HOM05D005647 ORTHO05D006968 4.0e-54 217.2 300 44.7
Zm00001eb163100 Zea mays HOM05D005647 ORTHO05D006968 5.4e-51 206.8 297 42.4
Dinv32824 Davidia involucrata HOM05D005647 ORTHO05D006968 1.2e-50 205.7 524 34.0
CsaV3_6G022020 Cucumis sativus L. HOM05D005647 ORTHO05D006968 2.1e-47 194.9 297 40.4
VMungo1127G0608 Vigna mungo HOM05D005647 ORTHO05D006968 1.3e-36 159.1 204 48.0
Aqoxy4G01384 Aquilegia oxysepala HOM05D005647 ORTHO05D006968 2.3e-33 148.3 113 62.8
MBI03_g45445_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 2.5e-32 144.8 120 60.8
VMungo1127G1495 Vigna mungo HOM05D005647 ORTHO05D006968 2.6e-29 134.8 146 51.4
Lsat_1_v5_gn_5_100621 Lactuca sativa HOM05D005647 ORTHO05D006968 3.4e-29 134.4 165 45.5
CARHR273620 Cardamine hirsuta HOM05D005647 ORTHO05D006968 5.8e-29 133.7 135 54.8
Cre02.g088050 Chlamydomonas reinhardtii HOM05D005647 ORTHO05D006968 2.1e-26 125.2 280 29.6
SMO348G0064 Selaginella moellendorffii HOM05D005647 ORTHO05D006968 7.4e-24 116.7 128 46.9
SEGI_06158 Sequoiadendron giganteum HOM05D005647 ORTHO05D006968 5.8e-21 107.1 106 50.0
EL10Ac9g22529 Beta vulgaris HOM05D005647 ORTHO05D006968 2.2e-20 105.1 83 60.2
QL03p025644 Quercus lobata HOM05D005647 ORTHO05D006968 1.8e-17 95.5 62 72.6
MCO02G042 Micromonas commoda HOM05D005647 ORTHO05D006968 4.8e-15 87.4 180 28.9
MBI10_g46876_MAGBIO Magnolia biondii HOM05D005647 ORTHO05D006968 4.1e-14 84.3 80 51.2
Gohir.D11G155700 Gossypium hirsutum HOM05D001229 ORTHO05D011852 2.2e-12 78.6 56 67.9
Gorai.007G165900 Gossypium raimondii HOM05D001229 ORTHO05D011852 2.2e-12 78.6 56 67.9
MBI14_g07932_MAGBIO Magnolia biondii HOM05D002922 ORTHO05D006968 3.2e-11 74.7 55 65.5
QL01p034582 Quercus lobata HOM05D005647 ORTHO05D006968 1.2e-10 72.8 169 32.0
C07p28110 Brassica napus HOM05D008189 ORTHO05D031905 1.5e-08 65.9 71 49.3
Cfa010667 Carpinus fangiana HOM05D001360 ORTHO05D001231 6.3e-07 60.5 108 37.0
QL01p034573 Quercus lobata HOM05D005647 ORTHO05D006968 6.3e-07 60.5 58 56.9


User provided reference genes

Program Settings