Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G2932 Fragaria x ananassa HOM05D004141 ORTHO05D005416 1.1e-245 852.8 426 100.0
FAN16G3678 Fragaria x ananassa HOM05D004141 ORTHO05D005416 1.3e-222 776.2 428 92.1
FAN11G2786 Fragaria x ananassa HOM05D004141 ORTHO05D005416 2.3e-222 775.4 426 91.8
FvH4_3g18220 Fragaria vesca HOM05D004141 ORTHO05D005416 2.8e-220 768.5 426 91.5
RcHm_v2.0_Chr5g0030771 Rosa chinensis HOM05D004141 ORTHO05D005416 8.9e-211 736.9 431 87.7
MD11G1264500 Malus domestica HOM05D004141 ORTHO05D005416 7.1e-200 700.7 431 82.1
Prupe.5G052700 Prunus persica HOM05D004141 ORTHO05D005416 6.6e-198 694.1 431 81.4
Prupe.4G241400 Prunus persica HOM05D004141 ORTHO05D005416 8.1e-196 687.2 431 81.2
FAN25G0103 Fragaria x ananassa HOM05D004141 ORTHO05D005416 1.5e-194 682.9 426 82.6
Dinv15000 Davidia involucrata HOM05D004141 ORTHO05D005416 5.6e-189 664.5 424 78.1
Actinidia18802 Actinidia chinensis HOM05D004141 ORTHO05D005416 1.4e-187 659.8 431 75.6
CSS0023821 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 5.3e-187 657.9 425 77.9
QL06p023676 Quercus lobata HOM05D004141 ORTHO05D005416 6.9e-187 657.5 425 76.2
Cfa017272 Carpinus fangiana HOM05D004141 ORTHO05D005416 5.8e-186 654.4 431 76.3
Rhsim04G0026700 Rhododendron simsii HOM05D004141 ORTHO05D005416 5.8e-186 654.4 449 72.8
Gohir.D01G042710 Gossypium hirsutum HOM05D004141 ORTHO05D005416 2.2e-185 652.5 420 76.2
Gorai.002G054000 Gossypium raimondii HOM05D004141 ORTHO05D005416 2.2e-185 652.5 420 76.2
Sabra11G0096600 Salix brachista HOM05D004141 ORTHO05D005416 6.4e-185 651.0 435 76.3
CANSAT78G2476 Cannabis sativa HOM05D004141 ORTHO05D005416 3.2e-184 648.7 431 77.3
CANSAT78G1263 Cannabis sativa HOM05D004141 ORTHO05D005416 4.2e-184 648.3 431 77.3
COL.COLO4_17535 Corchorus olitorius HOM05D004141 ORTHO05D005416 4.2e-184 648.3 424 76.4
TWI31G0451 Tripterygium wilfordii HOM05D004141 ORTHO05D005416 4.2e-184 648.3 426 75.1
MELO3C016129.2 Cucumis melo HOM05D004141 ORTHO05D005416 1.6e-183 646.4 422 76.3
TAR627G0990 Trochodendron aralioides HOM05D004141 ORTHO05D005416 2.1e-183 646.0 426 75.4
TAR629G0569 Trochodendron aralioides HOM05D004141 ORTHO05D005416 3.5e-183 645.2 424 76.9
Potri.011G109000 Populus trichocarpa HOM05D004141 ORTHO05D005416 1.0e-182 643.7 423 76.6
Atru.chr2.2126 Acer truncatum HOM05D004141 ORTHO05D005416 1.3e-182 643.3 424 76.2
CiPaw.11G159700 Carya illinoinensis HOM05D004141 ORTHO05D005416 3.9e-182 641.7 426 75.6
Thecc.07G117900 Theobroma cacao HOM05D004141 ORTHO05D005416 2.5e-181 639.0 429 74.1
Cpa.g.sc77.17 Carica papaya HOM05D004141 ORTHO05D005416 3.3e-181 638.6 424 75.0
Glyma.13G269200 Glycine max HOM05D004141 ORTHO05D005416 2.1e-180 636.0 433 73.7
Duzib213G0227 Durio zibethinus HOM05D004141 ORTHO05D005416 4.8e-180 634.8 429 73.9
CsaV3_4G008070 Cucumis sativus L. HOM05D004141 ORTHO05D005416 6.2e-180 634.4 419 74.2
Glyma.12G230400 Glycine max HOM05D004141 ORTHO05D005416 8.1e-180 634.0 430 74.7
PGSC0003DMG400030465 Solanum tuberosum HOM05D004141 ORTHO05D005416 8.1e-180 634.0 429 73.7
Sopen06g033870 Solanum pennellii HOM05D004141 ORTHO05D005416 1.1e-179 633.6 429 73.2
Oeu061361.2 Olea europaea HOM05D004141 ORTHO05D005416 1.4e-179 633.3 425 74.8
Solyc06g082490.4 Solanum lycopersicum HOM05D004141 ORTHO05D005416 1.4e-179 633.3 429 73.2
vmacro09491 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 4.0e-179 631.7 424 73.6
Atru.chr3.1550 Acer truncatum HOM05D004141 ORTHO05D005416 6.9e-179 630.9 471 69.6
Lalb_Chr25g0285811 Lupinus albus HOM05D004141 ORTHO05D005416 2.0e-178 629.4 419 73.3
GSVIVG01014186001 Vitis vinifera HOM05D004141 ORTHO05D005416 2.0e-178 629.4 424 74.3
Cc05_g11010 Coffea canephora HOM05D004141 ORTHO05D005416 3.4e-178 628.6 424 74.3
CsaV3_7G010060 Cucumis sativus L. HOM05D004141 ORTHO05D005416 4.5e-178 628.2 417 74.1
Nn7g36869 Nelumbo nucifera HOM05D004141 ORTHO05D005416 7.6e-178 627.5 429 73.0
Ca_10927_v3 Cicer arietinum L. HOM05D004141 ORTHO05D005416 9.9e-178 627.1 424 73.3
Ciclev10020399m.g Citrus clementina HOM05D004141 ORTHO05D005416 9.9e-178 627.1 425 75.3
arahy.Tifrunner.gnm1.ann1.K2RFPE Arachis hypogaea HOM05D004141 ORTHO05D005416 1.3e-177 626.7 426 73.5
Nitab4.5_0000383g0110 Nicotiana tabacum HOM05D004141 ORTHO05D005416 1.3e-177 626.7 425 74.4
Hma1.2p1_1016F.1_g248060 Hydrangea macrophylla HOM05D004141 ORTHO05D005416 1.7e-177 626.3 429 72.5
arahy.Tifrunner.gnm1.ann1.2ZZ8MX Arachis hypogaea HOM05D004141 ORTHO05D005416 2.2e-177 625.9 426 73.5
Migut.H02002 Erythranthe guttata HOM05D004141 ORTHO05D005416 8.4e-177 624.0 424 72.2
Lj6g0002556 Lotus japonicus HOM05D004141 ORTHO05D005416 8.4e-177 624.0 420 73.1
Rhsim02G0051200 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.1e-176 623.6 466 67.4
Medtr1g104880 Medicago truncatula HOM05D004141 ORTHO05D005416 1.4e-176 623.2 430 72.1
Eucgr.F01245 Eucalyptus grandis HOM05D004141 ORTHO05D005416 1.9e-176 622.9 426 72.1
Lj3g0016162 Lotus japonicus HOM05D004141 ORTHO05D005416 5.5e-176 621.3 420 72.4
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 9.3e-176 620.5 426 73.2
Peaxi162Scf00111g01467 Petunia axillaris HOM05D004141 ORTHO05D005416 9.3e-176 620.5 419 73.5
SGA_v2.0_scaffold130G34289 Striga asiatica HOM05D004141 ORTHO05D005416 9.3e-176 620.5 425 71.8
VMungo1080G0359 Vigna mungo HOM05D004141 ORTHO05D005416 9.3e-176 620.5 424 73.1
Phvul.005G081600 Phaseolus vulgaris HOM05D004141 ORTHO05D005416 1.6e-175 619.8 424 72.9
Psat6g208960 Pisum sativum HOM05D004141 ORTHO05D005416 4.6e-175 618.2 422 73.5
DCAR_030174 Daucus carota HOM05D004141 ORTHO05D005416 1.0e-174 617.1 429 71.3
MSTRG.11343 Avicennia marina HOM05D004141 ORTHO05D005416 1.3e-174 616.7 423 70.7
Carub.0002s2562 Capsella rubella HOM05D004141 ORTHO05D005416 1.3e-174 616.7 420 73.6
Aqoxy1G02012 Aquilegia oxysepala HOM05D004141 ORTHO05D005416 5.1e-174 614.8 428 72.2
BcaC08g47454 Brassica carinata HOM05D004141 ORTHO05D005416 8.7e-174 614.0 425 72.5
BolC6t40287H Brassica oleracea HOM05D004141 ORTHO05D005416 8.7e-174 614.0 425 72.5
Lj1C587G1 Lonicera japonica HOM05D004141 ORTHO05D005416 8.7e-174 614.0 423 73.0
AT1G78800 Arabidopsis thaliana HOM05D004141 ORTHO05D005416 1.1e-173 613.6 427 72.6
PSO017G5924 Papaver somniferum HOM05D004141 ORTHO05D005416 1.1e-173 613.6 424 72.2
PGR004G1319 Punica granatum HOM05D004141 ORTHO05D005416 2.5e-173 612.5 425 74.4
PGR117G0003 Punica granatum HOM05D004141 ORTHO05D005416 2.5e-173 612.5 425 74.4
Sp5g33830 Schrenkiella parvula HOM05D004141 ORTHO05D005416 3.3e-173 612.1 424 72.6
SalBow7G1122 Salvia bowleyana HOM05D004141 ORTHO05D005416 4.3e-173 611.7 424 71.0
C06p52680 Brassica napus HOM05D004141 ORTHO05D005416 5.6e-173 611.3 417 72.9
BraA07t31908Z Brassica rapa HOM05D004141 ORTHO05D005416 7.4e-173 610.9 428 72.4
Peaxi162Scf00390g00331 Petunia axillaris HOM05D004141 ORTHO05D005416 9.6e-173 610.5 421 73.2
BcaB03g16036 Brassica carinata HOM05D004141 ORTHO05D005416 2.1e-172 609.4 414 73.2
Sc03g0010560 Simmondsia chinensis HOM05D004141 ORTHO05D005416 6.2e-172 607.8 429 71.3
AL2G39200 Arabidopsis lyrata HOM05D004141 ORTHO05D005416 8.2e-172 607.4 427 72.4
AUR62019583 Chenopodium quinoa HOM05D004141 ORTHO05D005416 8.2e-172 607.4 420 70.7
A07p44000 Brassica napus HOM05D004141 ORTHO05D005416 1.1e-171 607.1 420 72.4
PSO170G2286 Papaver somniferum HOM05D004141 ORTHO05D005416 2.4e-171 605.9 424 71.2
Aa31LG4G2230 Aethionema arabicum HOM05D004141 ORTHO05D005416 4.0e-171 605.1 435 70.6
Ah.16g104680 Amaranthus hybridus HOM05D004141 ORTHO05D005416 9.0e-171 604.0 420 71.4
Actinidia35211 Actinidia chinensis HOM05D004141 ORTHO05D005416 2.6e-170 602.4 390 77.2
MBI14_g32936_MAGBIO Magnolia biondii HOM05D004141 ORTHO05D005416 2.6e-170 602.4 429 69.9
ClCG07G010270 Citrullus lanatus HOM05D004141 ORTHO05D005416 3.4e-170 602.1 419 72.8
HanXRQChr04g0118321 Helianthus annuus HOM05D004141 ORTHO05D005416 4.9e-169 598.2 419 70.6
arahy.Tifrunner.gnm1.ann1.DJ268J Arachis hypogaea HOM05D004141 ORTHO05D005416 6.5e-169 597.8 444 68.9
Sed0017698 Sechium edule HOM05D004141 ORTHO05D005416 8.4e-169 597.4 439 69.9
Thhalv10007837m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 2.5e-168 595.9 424 71.9
ECA232G4285 Erigeron canadensis HOM05D004141 ORTHO05D005416 4.2e-168 595.1 424 71.0
THA.LOC104812317 Tarenaya hassleriana HOM05D004141 ORTHO05D005416 5.5e-168 594.7 424 70.5
HanXRQChr15g0495231 Helianthus annuus HOM05D004141 ORTHO05D005416 1.6e-167 593.2 430 69.8
Zm00001eb072460 Zea mays HOM05D004141 ORTHO05D005416 5.7e-165 584.7 417 70.7
AUR62037553 Chenopodium quinoa HOM05D004141 ORTHO05D005416 7.4e-165 584.3 405 70.9
ATR0807G029 Amborella trichopoda HOM05D004141 ORTHO05D005416 1.8e-163 579.7 433 67.4
Lsat_1_v5_gn_7_102521 Lactuca sativa HOM05D004141 ORTHO05D005416 7.6e-162 574.3 423 68.3
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 1.3e-161 573.5 417 69.1
Hund09287 Selenicereus undatus HOM05D004141 ORTHO05D005416 2.2e-161 572.8 423 66.9
EL10Ac4g08353 Beta vulgaris HOM05D004141 ORTHO05D005416 1.1e-160 570.5 510 59.4
unitig_72.g29740 Utricularia gibba HOM05D004141 ORTHO05D005416 1.4e-160 570.1 439 63.8
HPP92_017867 Vanilla planifolia HOM05D004141 ORTHO05D005416 1.8e-158 563.1 410 69.5
Manes.03G100400 Manihot esculenta HOM05D004141 ORTHO05D005416 7.4e-157 557.8 371 76.0
unitig_746.g26536 Utricularia gibba HOM05D004141 ORTHO05D005416 4.8e-156 555.1 405 65.9
Duzib213G0637 Durio zibethinus HOM05D004141 ORTHO05D005416 6.9e-155 551.2 429 66.9
CSS0043357 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 5.9e-154 548.1 436 67.2
Sed0020321 Sechium edule HOM05D004141 ORTHO05D005416 1.6e-151 540.0 366 73.8
SEGI_24046 Sequoiadendron giganteum HOM05D004141 ORTHO05D005416 4.7e-151 538.5 411 63.7
ECA240G0250 Erigeron canadensis HOM05D004141 ORTHO05D005416 5.1e-150 535.0 384 70.3
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 1.5e-149 533.5 379 69.4
CSS0028209 Camellia sinensis var. sinensis HOM05D004141 ORTHO05D005416 5.7e-149 531.6 419 66.8
Pp3c12_4340 Physcomitrium patens HOM05D004141 ORTHO05D005416 8.0e-143 511.1 429 58.5
Oeu031026.1 Olea europaea HOM05D004141 ORTHO05D005416 7.4e-141 504.6 405 64.4
AagrBONN_evm.TU.Sc2ySwM_117.897 Anthoceros agrestis HOM05D004141 ORTHO05D005416 5.3e-139 498.4 434 58.8
Gohir.A01G053700 Gossypium hirsutum HOM05D004141 ORTHO05D005416 2.5e-136 489.6 328 74.4
Dinv18368 Davidia involucrata HOM05D004141 ORTHO05D005416 2.7e-135 486.1 429 60.8
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 1.8e-134 483.4 422 58.1
Mapoly0001s0113 Marchantia polymorpha HOM05D004141 ORTHO05D005416 2.2e-129 466.5 411 56.7
Thhalv10019736m.g Eutrema salsugineum HOM05D004141 ORTHO05D005416 4.0e-126 455.7 424 57.1
SHI08479 Sapria himalayana HOM05D004141 ORTHO05D000023 1.3e-116 424.1 387 60.2
Potri.001G393000 Populus trichocarpa HOM05D004141 ORTHO05D005416 2.9e-113 412.9 389 60.2
TPR.G5502 Trifolium pratense HOM05D004141 ORTHO05D005416 5.4e-107 392.1 252 76.6
PRCOL_00006028 Prasinoderma coloniale HOM05D004141 ORTHO05D005416 6.6e-105 385.2 429 49.0
Haze_09318 Corylus avellana HOM05D004141 ORTHO05D005416 3.4e-101 372.9 277 72.2
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 1.3e-100 370.9 430 46.3
DCAR_013161 Daucus carota HOM05D004141 ORTHO05D005416 3.0e-97 359.8 270 69.6
CAN.G874.81 Capsicum annuum HOM05D004141 ORTHO05D005416 2.5e-96 356.7 204 82.8
vmacro11945 Vaccinium macrocarpon HOM05D004141 ORTHO05D005416 3.3e-96 356.3 248 72.2
Cre02.g095147 Chlamydomonas reinhardtii HOM05D004141 ORTHO05D005416 1.2e-93 347.8 457 44.2
CARHR072350 Cardamine hirsuta HOM05D004141 ORTHO05D005416 7.5e-93 345.1 204 80.9
Haze_26741 Corylus avellana HOM05D004141 ORTHO05D005416 1.3e-89 334.3 425 45.2
C03p92790 Brassica napus HOM05D004141 ORTHO05D005416 1.7e-89 334.0 198 80.8
Rhsim12G0175600 Rhododendron simsii HOM05D004141 ORTHO05D005416 7.1e-83 312.0 429 43.4
CBR_g988 Chara braunii HOM05D004141 ORTHO05D005416 5.8e-77 292.4 454 39.4
Nitab4.5_0002851g0030 Nicotiana tabacum HOM05D004141 ORTHO05D005416 6.9e-70 268.9 392 43.6
Rhsim08G0243200 Rhododendron simsii HOM05D004141 ORTHO05D005416 6.4e-68 262.3 313 49.5
CAN.G4738.1 Capsicum annuum HOM05D004141 ORTHO05D005416 8.4e-68 261.9 156 79.5
MD00G1077900 Malus domestica HOM05D004141 ORTHO05D005416 1.2e-66 258.1 215 66.0
Lalb_Chr01g0016531 Lupinus albus HOM05D004141 ORTHO05D005416 3.3e-64 250.0 153 74.5
Cfa025499 Carpinus fangiana HOM05D004141 ORTHO05D005416 3.7e-63 246.5 450 37.1
MD03G1178900 Malus domestica HOM05D004141 ORTHO05D005416 1.1e-59 235.0 224 59.8
BcaC01g01525 Brassica carinata HOM05D004141 ORTHO05D005416 1.4e-59 234.6 219 58.4
Rhsim06G0208700 Rhododendron simsii HOM05D004141 ORTHO05D005416 5.5e-59 232.6 348 42.0
Ciclev10022380m.g Citrus clementina HOM05D004141 ORTHO05D005416 8.7e-57 225.3 270 50.0
Ciclev10022599m.g Citrus clementina HOM05D004141 ORTHO05D005416 8.4e-52 208.8 210 56.7
Rhsim02G0229600 Rhododendron simsii HOM05D004141 ORTHO05D005416 1.9e-48 197.6 119 79.0
Lalb_Chr01g0016541 Lupinus albus HOM05D004141 ORTHO05D048486 7.7e-45 185.7 138 68.1
BcaB05g25154 Brassica carinata HOM05D004141 ORTHO05D005416 4.8e-31 139.8 171 46.8
SHI22488 Sapria himalayana HOM05D004141 ORTHO05D005416 7.7e-29 132.5 292 33.2
Rhsim02G0051400 Rhododendron simsii HOM05D004141 ORTHO05D000437 5.0e-28 129.8 85 70.6
BraA02t07239Z Brassica rapa HOM05D004141 ORTHO05D026982 1.6e-26 124.8 83 71.1
A02p22350 Brassica napus HOM05D004141 ORTHO05D026982 1.0e-25 122.1 83 69.9
C02p35890 Brassica napus HOM05D004141 ORTHO05D005416 2.8e-23 114.0 320 28.4
Nitab4.5_0010088g0010 Nicotiana tabacum HOM05D004141 ORTHO05D005416 3.7e-23 113.6 103 53.4
MD00G1077500 Malus domestica HOM05D004141 ORTHO05D005416 9.1e-22 109.0 66 75.8
EL10Ac3g06735 Beta vulgaris HOM05D004141 ORTHO05D026982 8.5e-20 102.4 57 77.2
RcHm_v2.0_Chr4g0402621 Rosa chinensis HOM05D004141 ORTHO05D344211 1.1e-19 102.1 66 81.8
EL10Ac3g06738 Beta vulgaris HOM05D004141 ORTHO05D026982 3.2e-19 100.5 55 78.2
BcaC01g01527 Brassica carinata HOM05D004141 ORTHO05D009181 2.4e-14 84.3 59 71.2
RcHm_v2.0_Chr3g0486691 Rosa chinensis HOM05D004141 ORTHO05D347679 2.0e-13 81.3 55 78.2
BcaC01g01526 Brassica carinata HOM05D004141 ORTHO05D005416 4.5e-13 80.1 58 63.8
MD00G1078000 Malus domestica HOM05D004141 ORTHO05D005416 1.5e-11 75.1 43 72.1
BcaC03g15838 Brassica carinata HOM05D004141 ORTHO05D005416 5.5e-11 73.2 46 69.6
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 2.1e-10 71.2 267 27.0
PRCOL_00001337 Prasinoderma coloniale HOM05D003378 ORTHO05D003942 8.3e-07 59.3 140 28.6
MD05G1191300 Malus domestica HOM05D002084 ORTHO05D002031 1.8e-06 58.2 53 58.5
Prupe.4G169100 Prunus persica HOM05D004141 ORTHO05D005416 1.8e-06 58.2 53 56.6
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 7.0e-06 56.2 208 29.8
THA.LOC104809282 Tarenaya hassleriana HOM05D003484 ORTHO05D004152 7.0e-06 56.2 140 27.1


User provided reference genes

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