Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G2911 Fragaria x ananassa HOM05D004274 ORTHO05D004980 4.1e-102 374.8 194 100.0
FAN16G2313 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.0e-93 345.9 204 90.2
Lalb_Chr15g0085561 Lupinus albus HOM05D004274 ORTHO05D004980 4.2e-67 258.5 185 70.3
Medtr3g062940 Medicago truncatula HOM05D004274 ORTHO05D004980 4.2e-67 258.5 197 68.0
Glyma.18G049100 Glycine max HOM05D004274 ORTHO05D004980 5.5e-67 258.1 183 72.1
Ca_15091_v3 Cicer arietinum L. HOM05D004274 ORTHO05D004980 9.4e-67 257.3 198 68.2
CANSAT54G0105 Cannabis sativa HOM05D004274 ORTHO05D004980 1.2e-66 256.9 178 73.0
Manes.02G210080 Manihot esculenta HOM05D004274 ORTHO05D004980 8.0e-66 254.2 199 66.8
TPR.G13822 Trifolium pratense HOM05D004274 ORTHO05D004980 2.3e-65 252.7 201 67.7
VMungo0540G0713 Vigna mungo HOM05D004274 ORTHO05D004980 3.4e-64 248.8 215 63.7
ECA247G3741 Erigeron canadensis HOM05D004274 ORTHO05D004980 7.5e-64 247.7 165 76.4
HanXRQChr13g0391791 Helianthus annuus HOM05D004274 ORTHO05D004980 7.5e-64 247.7 168 74.4
Lsat_1_v5_gn_9_15480 Lactuca sativa HOM05D004274 ORTHO05D004980 1.3e-63 246.9 166 74.1
Nitab4.5_0002399g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 8.3e-63 244.2 166 74.7
Cc01_g15600 Coffea canephora HOM05D004274 ORTHO05D004980 1.1e-62 243.8 182 69.8
Lj2C1107G8 Lonicera japonica HOM05D004274 ORTHO05D004980 1.1e-62 243.8 168 73.8
FAN11G1599 Fragaria x ananassa HOM05D004274 ORTHO05D004980 1.8e-62 243.0 162 79.6
Peaxi162Scf00293g00719 Petunia axillaris HOM05D004274 ORTHO05D004980 2.4e-62 242.7 157 77.7
Nitab4.5_0000539g0100 Nicotiana tabacum HOM05D004274 ORTHO05D004980 7.0e-62 241.1 165 74.5
Oeu023904.1 Olea europaea HOM05D004274 ORTHO05D004980 9.1e-62 240.7 175 72.0
Gohir.D10G148100 Gossypium hirsutum HOM05D004274 ORTHO05D004980 1.2e-61 240.4 166 72.9
arahy.Tifrunner.gnm1.ann1.P847CR Arachis hypogaea HOM05D004274 ORTHO05D004980 3.5e-61 238.8 196 66.8
arahy.Tifrunner.gnm1.ann1.URW4K1 Arachis hypogaea HOM05D004274 ORTHO05D004980 3.5e-61 238.8 196 67.3
Gohir.A10G118575 Gossypium hirsutum HOM05D004274 ORTHO05D004980 4.5e-61 238.4 165 72.7
Oeu020453.2 Olea europaea HOM05D004274 ORTHO05D004980 4.5e-61 238.4 175 71.4
PGSC0003DMG400015127 Solanum tuberosum HOM05D004274 ORTHO05D004980 5.9e-61 238.0 160 74.4
Duzib168G2323 Durio zibethinus HOM05D004274 ORTHO05D004980 7.7e-61 237.7 161 73.3
CiPaw.13G059500 Carya illinoinensis HOM05D004274 ORTHO05D004980 1.0e-60 237.3 192 65.1
Lj6g0024729 Lotus japonicus HOM05D004274 ORTHO05D004980 1.0e-60 237.3 162 74.1
THA.LOC104823773 Tarenaya hassleriana HOM05D004274 ORTHO05D004980 1.7e-60 236.5 175 69.7
AUR62017620 Chenopodium quinoa HOM05D004274 ORTHO05D004980 2.2e-60 236.1 171 71.3
AUR62015168 Chenopodium quinoa HOM05D004274 ORTHO05D004980 2.9e-60 235.7 170 71.2
PSO384G1823 Papaver somniferum HOM05D004274 ORTHO05D004980 2.9e-60 235.7 157 77.1
Thecc.09G366500 Theobroma cacao HOM05D004274 ORTHO05D004980 2.9e-60 235.7 165 72.1
Migut.N00703 Erythranthe guttata HOM05D004274 ORTHO05D004980 6.5e-60 234.6 168 72.0
PSO339G1940 Papaver somniferum HOM05D004274 ORTHO05D004980 6.5e-60 234.6 157 76.4
AT5G58240 Arabidopsis thaliana HOM05D004274 ORTHO05D004980 8.5e-60 234.2 176 69.3
GSVIVG01024520001 Vitis vinifera HOM05D004274 ORTHO05D004980 8.5e-60 234.2 198 63.6
Aa31LG11G30 Aethionema arabicum HOM05D004274 ORTHO05D004980 1.9e-59 233.0 172 71.5
BraA10t43627Z Brassica rapa HOM05D004274 ORTHO05D004980 1.9e-59 233.0 163 72.4
Hma1.2p1_0161F.1_g071960 Hydrangea macrophylla HOM05D004274 ORTHO05D004980 1.9e-59 233.0 180 68.9
Sed0009740 Sechium edule HOM05D004274 ORTHO05D004980 1.9e-59 233.0 166 71.7
C09p50090 Brassica napus HOM05D004274 ORTHO05D004980 3.2e-59 232.3 156 75.0
BolC9t57861H Brassica oleracea HOM05D004274 ORTHO05D004980 3.2e-59 232.3 156 75.0
BcaC04g19900 Brassica carinata HOM05D004274 ORTHO05D004980 7.2e-59 231.1 156 74.4
A10p15980 Brassica napus HOM05D004274 ORTHO05D004980 7.2e-59 231.1 156 74.4
Sp6g19900 Schrenkiella parvula HOM05D004274 ORTHO05D004980 7.2e-59 231.1 173 67.6
AL8G34340 Arabidopsis lyrata HOM05D004274 ORTHO05D004980 9.4e-59 230.7 180 67.8
BcaB01g04543 Brassica carinata HOM05D004274 ORTHO05D004980 9.4e-59 230.7 156 74.4
Carub.0008s1878 Capsella rubella HOM05D004274 ORTHO05D004980 1.2e-58 230.3 175 68.6
Thhalv10014808m.g Eutrema salsugineum HOM05D004274 ORTHO05D004980 2.7e-58 229.2 175 67.4
Haze_24498 Corylus avellana HOM05D004274 ORTHO05D004980 4.7e-58 228.4 161 72.7
Psat5g146360 Pisum sativum HOM05D004274 ORTHO05D004980 1.0e-57 227.3 208 59.6
Gorai.011G165300 Gossypium raimondii HOM05D004274 ORTHO05D004980 1.4e-57 226.9 162 71.0
PGR083G2809 Punica granatum HOM05D004274 ORTHO05D004980 1.8e-57 226.5 167 68.9
Ah.01g002020 Amaranthus hybridus HOM05D004274 ORTHO05D004980 2.3e-57 226.1 158 72.2
Sed0016747 Sechium edule HOM05D004274 ORTHO05D004980 4.0e-57 225.3 188 63.8
Prupe.6G037600 Prunus persica HOM05D004274 ORTHO05D004980 5.2e-57 224.9 197 65.5
CSS0034718 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.2e-56 223.8 159 71.7
Rhsim01G0245500 Rhododendron simsii HOM05D004274 ORTHO05D004980 1.2e-56 223.8 178 66.3
MBI03_g31633_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 4.4e-56 221.9 161 71.4
Eucgr.D01050 Eucalyptus grandis HOM05D004274 ORTHO05D004980 5.7e-56 221.5 162 70.4
RcHm_v2.0_Chr5g0074031 Rosa chinensis HOM05D004274 ORTHO05D004980 2.8e-55 219.2 114 97.4
Cpa.g.sc84.38 Carica papaya HOM05D004274 ORTHO05D004980 3.7e-55 218.8 160 66.2
Os11g0120600 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 6.3e-55 218.0 156 69.2
RcHm_v2.0_Chr5g0074041 Rosa chinensis HOM05D004274 ORTHO05D004980 6.3e-55 218.0 162 75.3
SalBow2G3254 Salvia bowleyana HOM05D004274 ORTHO05D004980 1.4e-54 216.9 163 68.7
Medtr3g063030 Medicago truncatula HOM05D004274 ORTHO05D004980 5.4e-54 214.9 162 67.9
Ciclev10006524m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.2e-53 213.8 162 67.9
MELO3C013768.2 Cucumis melo HOM05D004274 ORTHO05D004980 2.0e-53 213.0 232 52.2
Aqoxy2G00658 Aquilegia oxysepala HOM05D004274 ORTHO05D004980 7.7e-53 211.1 162 69.8
FvH4_3g41190 Fragaria vesca HOM05D004274 ORTHO05D004980 7.7e-53 211.1 140 81.4
Ciclev10006852m.g Citrus clementina HOM05D004274 ORTHO05D004980 1.0e-52 210.7 199 56.8
SEGI_00344 Sequoiadendron giganteum HOM05D004274 ORTHO05D004980 1.7e-52 209.9 157 68.2
Psat5g146320 Pisum sativum HOM05D004274 ORTHO05D004980 2.3e-52 209.5 160 67.5
arahy.Tifrunner.gnm1.ann1.VY09I5 Arachis hypogaea HOM05D004274 ORTHO05D004980 6.6e-52 208.0 179 61.5
CsaV3_3G000810 Cucumis sativus L. HOM05D004274 ORTHO05D004980 1.5e-51 206.8 207 55.1
CANSAT54G0115 Cannabis sativa HOM05D004274 ORTHO05D004980 2.5e-51 206.1 165 63.0
Glyma.18G049000 Glycine max HOM05D004274 ORTHO05D004980 1.2e-50 203.8 158 67.7
MD03G1046300 Malus domestica HOM05D004274 ORTHO05D004980 2.8e-50 202.6 112 89.3
Lsat_1_v5_gn_8_98760 Lactuca sativa HOM05D004274 ORTHO05D004980 6.1e-50 201.4 157 64.3
Lj6g0019258 Lotus japonicus HOM05D004274 ORTHO05D004980 1.0e-49 200.7 158 64.6
ClCG10G003560 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.8e-49 199.9 159 62.3
Zm00001eb265500 Zea mays HOM05D004274 ORTHO05D004980 2.3e-49 199.5 156 66.7
TPR.G37420 Trifolium pratense HOM05D004274 ORTHO05D004980 4.0e-49 198.7 171 63.2
Glyma.11G201800 Glycine max HOM05D004274 ORTHO05D004980 2.6e-48 196.1 158 64.6
Sc04g0008110 Simmondsia chinensis HOM05D004274 ORTHO05D004980 2.6e-48 196.1 162 61.1
Eucgr.D01049 Eucalyptus grandis HOM05D004274 ORTHO05D004980 2.9e-47 192.6 124 79.0
Sabra19G0129400 Salix brachista HOM05D004274 ORTHO05D004980 3.7e-47 192.2 114 83.3
vmacro14660 Vaccinium macrocarpon HOM05D004274 ORTHO05D004980 4.9e-47 191.8 112 84.8
Atru.chr1.1108 Acer truncatum HOM05D004274 ORTHO05D004980 6.4e-47 191.4 114 83.3
Medtr3g062950 Medicago truncatula HOM05D004274 ORTHO05D004980 6.4e-47 191.4 169 63.9
ATR0743G223 Amborella trichopoda HOM05D004274 ORTHO05D004980 1.8e-46 189.9 114 81.6
Potri.019G133200 Populus trichocarpa HOM05D004274 ORTHO05D004980 2.4e-46 189.5 123 78.0
COL.COLO4_34964 Corchorus olitorius HOM05D004274 ORTHO05D004980 3.2e-46 189.1 111 85.6
SMO351G0049 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 4.1e-46 188.7 154 62.3
FvH4_3g41230 Fragaria vesca HOM05D004274 ORTHO05D004980 5.4e-46 188.3 162 67.3
TAR633G0792 Trochodendron aralioides HOM05D004274 ORTHO05D004980 9.2e-46 187.6 114 83.3
CARHR272040 Cardamine hirsuta HOM05D004274 ORTHO05D004980 1.2e-45 187.2 125 76.8
TWI32G0546 Tripterygium wilfordii HOM05D004274 ORTHO05D004980 1.2e-45 187.2 166 59.6
Dinv28766 Davidia involucrata HOM05D004274 ORTHO05D004980 1.6e-45 186.8 112 84.8
PSO339G1462 Papaver somniferum HOM05D004274 ORTHO05D004980 2.7e-45 186.0 161 61.5
CAN.G3.27 Capsicum annuum HOM05D004274 ORTHO05D004980 3.5e-45 185.7 112 79.5
Sc14g0008130 Simmondsia chinensis HOM05D004274 ORTHO05D004980 3.5e-45 185.7 112 81.2
AagrBONN_evm.TU.Sc2ySwM_228.3513 Anthoceros agrestis HOM05D004274 ORTHO05D004980 6.6e-44 181.4 157 61.1
EL10Ac9g22874 Beta vulgaris HOM05D004274 ORTHO05D004980 6.6e-44 181.4 126 74.6
CBR_g39157 Chara braunii HOM05D004274 ORTHO05D004980 8.6e-44 181.0 156 60.9
MD11G1049100 Malus domestica HOM05D004274 ORTHO05D004980 8.6e-44 181.0 151 62.3
Atru.chr1.1109 Acer truncatum HOM05D004274 ORTHO05D004980 1.1e-43 180.6 142 65.5
CiPaw.14G047000 Carya illinoinensis HOM05D004274 ORTHO05D004980 4.3e-43 178.7 159 59.1
Potri.013G161100 Populus trichocarpa HOM05D004274 ORTHO05D004980 4.3e-43 178.7 123 72.4
Phvul.006G082500 Phaseolus vulgaris HOM05D004274 ORTHO05D004980 1.6e-42 176.8 158 57.6
SMO163G0095 Selaginella moellendorffii HOM05D004274 ORTHO05D004980 3.6e-42 175.6 170 55.9
HPP92_015444 Vanilla planifolia HOM05D004274 ORTHO05D004980 6.2e-42 174.9 111 78.4
CDE08G1523 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 1.8e-41 173.3 112 75.0
Os11g0120725 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 4.0e-41 172.2 160 55.6
Lalb_Chr15g0085541 Lupinus albus HOM05D004274 ORTHO05D004980 6.8e-41 171.4 145 62.1
Sed0025842 Sechium edule HOM05D004274 ORTHO05D004980 8.9e-41 171.0 135 65.2
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 1.2e-40 170.6 167 53.9
arahy.Tifrunner.gnm1.ann1.1VUI6H Arachis hypogaea HOM05D004274 ORTHO05D004980 2.9e-39 166.0 123 68.3
MCO06G292 Micromonas commoda HOM05D004274 ORTHO05D004980 1.9e-38 163.3 165 53.3
Cre17.g698266 Chlamydomonas reinhardtii HOM05D004274 ORTHO05D004980 3.2e-38 162.5 166 53.6
Nn4g26698 Nelumbo nucifera HOM05D004274 ORTHO05D004980 1.2e-37 160.6 162 56.8
PRCOL_00000589 Prasinoderma coloniale HOM05D004274 ORTHO05D004980 3.3e-35 152.5 152 55.3
ECA236G4332 Erigeron canadensis HOM05D004274 ORTHO05D004980 3.6e-34 149.1 96 74.0
Actinidia23822 Actinidia chinensis HOM05D004274 ORTHO05D004980 1.4e-33 147.1 171 51.5
Pp3c4_3210 Physcomitrium patens HOM05D004274 ORTHO05D004980 2.3e-33 146.4 131 56.5
Ciclev10005970m.g Citrus clementina HOM05D004274 ORTHO05D004980 3.1e-33 146.0 173 49.7
CSS0035716 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.2e-32 144.1 111 70.3
MELO3C014026.2 Cucumis melo HOM05D004274 ORTHO05D004980 2.2e-31 139.8 112 61.6
SGA_v2.0_scaffold8G04481 Striga asiatica HOM05D004274 ORTHO05D004980 6.4e-31 138.3 163 52.8
Hund24406 Selenicereus undatus HOM05D004274 ORTHO05D004980 1.9e-30 136.7 76 82.9
RcHm_v2.0_Chr5g0074021 Rosa chinensis HOM05D004274 ORTHO05D004980 6.0e-29 131.7 80 82.5
unitig_26.g10228 Utricularia gibba HOM05D004274 ORTHO05D004980 4.3e-27 125.6 120 60.0
QL01p023459 Quercus lobata HOM05D004274 ORTHO05D004980 1.6e-26 123.6 123 56.9
CSS0003603 Camellia sinensis var. sinensis HOM05D004274 ORTHO05D004980 1.1e-25 120.9 69 84.1
ClCG00G000300 Citrullus lanatus HOM05D004274 ORTHO05D004980 1.1e-25 120.9 159 45.9
HanXRQChr08g0231121 Helianthus annuus HOM05D004274 ORTHO05D004980 5.8e-24 115.2 70 81.4
FAN12G2850 Fragaria x ananassa HOM05D004274 ORTHO05D004980 2.2e-23 113.2 136 52.9
MBI03_g31635_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 2.9e-23 112.8 70 80.0
MBI03_g31636_MAGBIO Magnolia biondii HOM05D004274 ORTHO05D004980 1.1e-22 110.9 71 77.5
FvH4_4g07220 Fragaria vesca HOM05D004274 ORTHO05D004980 1.4e-22 110.5 121 58.7
Os12g0120400 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 8.6e-20 101.3 69 63.8
EL10Ac9g22873 Beta vulgaris HOM05D007938 ORTHO05D009929 1.9e-19 100.1 160 41.2
ClCG00G001760 Citrullus lanatus HOM05D004274 ORTHO05D004980 9.6e-19 97.8 87 56.3
Lsat_1_v5_gn_1_8900 Lactuca sativa HOM05D004274 ORTHO05D004980 2.4e-17 93.2 55 80.0
Haze_26272 Corylus avellana HOM05D001787 ORTHO05D007379 2.9e-15 86.3 154 37.7
RcHm_v2.0_Chr1g0353171 Rosa chinensis HOM05D004274 ORTHO05D004980 3.2e-14 82.8 94 54.3
EL10Ac9g22872 Beta vulgaris HOM05D007938 ORTHO05D009929 1.0e-12 77.8 79 49.4
RcHm_v2.0_Chr4g0393461 Rosa chinensis HOM05D004274 ORTHO05D004980 1.3e-12 77.4 53 75.5
Solyc09g018630.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 2.5e-11 73.2 50 72.0
MD03G1046400 Malus domestica HOM05D004274 ORTHO05D004980 5.6e-11 72.0 45 77.8
Potri.019G133101 Populus trichocarpa HOM05D004274 ORTHO05D004980 1.1e-09 67.8 51 64.7
QL01p023462 Quercus lobata HOM05D004274 ORTHO05D004980 1.8e-09 67.0 70 52.9
Os09g0246250 Oryza sativa ssp. japonica HOM05D004274 ORTHO05D004980 4.0e-09 65.9 47 57.4
Hund24328 Selenicereus undatus HOM05D004274 ORTHO05D004980 4.0e-09 65.9 52 59.6
arahy.Tifrunner.gnm1.ann1.8HSJ02 Arachis hypogaea HOM05D002696 ORTHO05D011600 5.3e-09 65.5 37 78.4
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 5.3e-09 65.5 40 77.5
MSTRG.21280 Avicennia marina HOM05D004274 ORTHO05D004980 1.2e-08 64.3 70 47.1
MSTRG.12721 Avicennia marina HOM05D004274 ORTHO05D004980 2.0e-08 63.5 47 61.7
Sabra19G0129300 Salix brachista HOM05D004274 ORTHO05D004980 2.0e-08 63.5 59 59.3
CDE08G1045 Ceratophyllum demersum HOM05D004274 ORTHO05D004980 2.6e-08 63.2 41 68.3
Solyc09g018650.3 Solanum lycopersicum HOM05D004274 ORTHO05D004980 3.4e-08 62.8 44 63.6
ClCG10G000760 Citrullus lanatus HOM05D004274 ORTHO05D004980 5.8e-08 62.0 52 59.6
Dinv28765 Davidia involucrata HOM05D004274 ORTHO05D004980 7.6e-08 61.6 45 60.0
RcHm_v2.0_Chr2g0136141 Rosa chinensis HOM05D004274 ORTHO05D004980 1.3e-07 60.8 37 81.1
HPP92_015443 Vanilla planifolia HOM05D004274 ORTHO05D004980 1.3e-07 60.8 67 46.3
Actinidia34514 Actinidia chinensis HOM05D004274 ORTHO05D004980 3.8e-07 59.3 43 62.8
HanXRQChr08g0231131 Helianthus annuus HOM05D004274 ORTHO05D004980 1.4e-06 57.4 58 53.4
MSTRG.18523 Avicennia marina HOM05D004274 ORTHO05D004980 4.2e-06 55.8 41 56.1


User provided reference genes

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