Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 3.3e-303 1044.3 532 100.0
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 2.0e-297 1025.0 532 97.6
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 2.9e-283 978.0 532 93.2
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.5e-271 939.1 520 93.3
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 2.4e-269 931.8 529 87.9
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 1.4e-261 906.0 539 85.0
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 4.0e-253 877.9 525 82.9
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 1.2e-252 876.3 529 81.9
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 9.9e-252 873.2 522 82.8
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 1.1e-250 869.8 533 82.6
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 3.5e-249 864.8 530 81.5
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 3.0e-248 861.7 532 81.8
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 2.5e-247 858.6 531 79.7
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 4.3e-247 857.8 531 81.2
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 4.8e-246 854.4 530 79.8
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 1.8e-245 852.4 532 80.1
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 5.3e-245 850.9 526 81.4
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 5.8e-244 847.4 522 81.2
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 2.2e-243 845.5 532 80.5
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 2.1e-241 839.0 530 78.1
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 2.3e-240 835.5 516 80.8
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 3.9e-240 834.7 523 78.4
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 3.3e-239 831.6 524 77.9
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 1.6e-238 829.3 521 79.8
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 2.8e-238 828.6 537 76.7
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 4.8e-238 827.8 511 81.0
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 1.8e-237 825.9 526 79.7
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 9.0e-237 823.5 537 76.4
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 1.2e-236 823.2 533 76.4
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 3.8e-235 818.1 518 78.8
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 1.9e-234 815.8 514 79.0
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 3.2e-234 815.1 524 78.1
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 9.4e-234 813.5 533 77.3
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 3.6e-233 811.6 534 74.7
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 6.7e-232 807.4 535 74.0
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 8.8e-232 807.0 530 76.0
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 2.5e-231 805.4 525 79.2
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 2.8e-230 802.0 528 75.9
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 4.8e-230 801.2 535 74.0
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 8.2e-230 800.4 535 74.0
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 1.4e-229 799.7 460 84.8
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 6.9e-229 797.3 528 75.8
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 9.1e-229 797.0 525 75.0
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 2.0e-228 795.8 524 74.8
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 5.9e-228 794.3 525 74.9
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 6.5e-227 790.8 529 75.6
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 1.9e-226 789.3 462 84.6
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 1.9e-226 789.3 497 80.1
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 2.5e-226 788.9 526 75.5
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 7.2e-226 787.3 522 74.7
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 1.6e-225 786.2 531 75.0
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 1.6e-225 786.2 525 74.3
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 2.1e-225 785.8 531 74.8
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 2.7e-225 785.4 530 74.7
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 6.1e-225 784.3 530 74.3
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 6.1e-225 784.3 530 74.3
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 6.1e-225 784.3 536 73.7
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 6.1e-225 784.3 530 74.3
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 7.9e-225 783.9 526 75.3
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 1.0e-224 783.5 536 73.7
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 1.0e-224 783.5 536 73.7
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.0e-224 783.5 516 75.0
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 2.3e-224 782.3 533 73.9
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 3.9e-224 781.6 509 77.4
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 5.1e-224 781.2 525 74.5
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 8.8e-224 780.4 512 75.0
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 1.5e-223 779.6 533 73.5
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 2.0e-223 779.2 527 74.4
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 2.0e-223 779.2 524 74.4
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 2.0e-223 779.2 535 73.8
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 2.6e-223 778.9 533 73.4
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.6e-223 778.9 530 73.8
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 2.6e-223 778.9 518 76.1
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 4.4e-223 778.1 517 76.0
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 4.4e-223 778.1 537 72.6
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 5.7e-223 777.7 512 75.2
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 7.4e-223 777.3 525 74.1
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 2.8e-222 775.4 514 76.7
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 2.8e-222 775.4 520 74.8
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 3.7e-222 775.0 528 74.1
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 2.4e-221 772.3 520 76.5
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 4.1e-221 771.5 537 72.4
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 5.9e-220 767.7 526 73.4
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 2.2e-219 765.8 539 72.7
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 8.0e-217 757.3 521 73.1
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 2.2e-214 749.2 433 84.5
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 4.1e-213 745.0 507 74.6
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 1.6e-212 743.0 530 71.3
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 5.9e-212 741.1 481 76.9
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 6.5e-211 737.6 528 68.2
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 3.2e-210 735.3 480 76.5
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 4.2e-210 734.9 526 68.3
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 9.4e-210 733.8 521 69.9
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 3.6e-209 731.9 531 71.6
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 3.6e-209 731.9 528 68.0
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 3.6e-209 731.9 528 67.4
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 4.0e-208 728.4 536 68.3
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 1.2e-207 726.9 517 70.2
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 5.7e-207 724.5 524 68.5
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 5.7e-207 724.5 524 68.5
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 1.7e-206 723.0 517 69.8
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 1.7e-206 723.0 517 69.8
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 4.8e-206 721.5 522 68.4
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 3.1e-205 718.8 534 65.9
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 5.3e-205 718.0 519 67.8
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 6.8e-200 701.0 452 79.4
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 6.3e-198 694.5 456 73.7
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 9.1e-197 690.6 530 64.7
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 4.2e-194 681.8 465 71.0
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 3.7e-190 668.7 427 78.2
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 6.6e-187 657.9 521 62.2
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 1.2e-185 653.7 518 63.3
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 3.4e-183 645.6 499 63.7
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 4.9e-182 641.7 528 60.6
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.6e-180 636.7 391 81.1
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 1.9e-178 629.8 387 79.6
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 1.1e-176 624.0 524 60.9
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 5.1e-171 605.1 386 78.8
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 5.2e-168 595.1 460 64.3
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 1.2e-167 594.0 526 59.5
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 8.1e-161 571.2 363 78.2
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 2.7e-156 556.2 386 69.4
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 1.0e-155 554.3 391 69.8
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 4.9e-150 535.4 320 82.2
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 3.2e-141 506.1 344 73.5
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 3.3e-138 496.1 325 73.5
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 3.4e-135 486.1 474 49.8
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 6.0e-132 475.3 523 47.8
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.5e-127 460.7 456 50.0
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 2.4e-120 436.8 539 42.5
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 1.5e-111 407.5 546 39.4
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.9e-109 400.6 226 87.2
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 7.7e-95 352.1 250 72.0
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.0e-75 288.5 198 72.7
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 8.3e-73 278.9 194 72.7
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 2.0e-66 257.7 184 70.7
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 9.8e-66 255.4 151 82.1
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 4.0e-59 233.4 160 75.6
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 5.4e-56 223.0 135 81.5
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 2.1e-55 221.1 171 63.2
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.6e-52 211.5 146 73.3
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 7.1e-48 196.1 159 61.0
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 2.4e-43 181.0 148 64.2
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 2.4e-32 144.4 99 71.7
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 3.2e-32 144.1 149 54.4
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 2.0e-26 124.8 110 60.0
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 4.9e-25 120.2 74 79.7
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.2e-23 115.5 505 23.6
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 8.7e-22 109.4 71 74.6
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 5.3e-19 100.1 472 24.8
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 4.3e-13 80.5 67 58.2
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 4.3e-13 80.5 67 58.2
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 1.5e-10 72.0 46 73.9
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 5.5e-08 63.5 48 62.5
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 1.2e-07 62.4 46 60.9
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 7.9e-07 59.7 51 56.9


User provided reference genes

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