Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 0.0e+00 1137.5 581 100.0
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 0.0e+00 1076.6 581 95.5
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 7.9e-312 1073.2 581 94.8
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 9.7e-309 1062.8 604 91.7
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 5.0e-297 1023.8 581 91.2
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 1.1e-283 979.5 581 86.4
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 3.4e-277 958.0 574 85.7
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 2.8e-276 954.9 574 85.4
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 1.3e-268 929.5 576 82.1
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 1.2e-266 922.9 496 95.2
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 7.5e-261 903.7 576 78.1
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 2.2e-260 902.1 574 79.3
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 3.7e-260 901.4 581 78.7
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 1.4e-259 899.4 575 79.0
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 9.2e-259 896.7 644 73.1
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 1.6e-258 896.0 574 79.1
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 3.5e-258 894.8 577 78.5
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 4.6e-258 894.4 576 78.3
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 7.8e-258 893.6 577 78.3
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 3.0e-257 891.7 577 78.3
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 5.0e-257 891.0 576 77.8
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 3.3e-256 888.3 576 77.6
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 5.6e-256 887.5 576 78.1
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.1e-255 885.6 582 77.0
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 4.7e-255 884.4 579 77.4
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 6.2e-255 884.0 582 76.8
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.4e-254 882.9 582 76.6
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 3.1e-254 881.7 576 78.5
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 4.0e-254 881.3 580 76.9
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 5.2e-254 880.9 581 76.9
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 6.8e-254 880.6 577 77.1
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 8.9e-254 880.2 581 76.4
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 1.2e-253 879.8 584 77.1
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 3.7e-252 874.8 575 76.7
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.9e-251 872.5 572 77.1
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 3.2e-251 871.7 572 77.1
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 3.2e-251 871.7 576 75.3
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 9.2e-251 870.2 576 75.2
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 3.5e-250 868.2 577 76.1
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 1.7e-249 865.9 576 75.9
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 5.0e-249 864.4 573 76.1
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 1.1e-248 863.2 581 75.6
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 1.9e-248 862.4 564 76.6
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 5.6e-248 860.9 581 75.2
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 1.2e-247 859.8 564 76.2
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 1.2e-247 859.8 576 74.8
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 1.6e-247 859.4 578 75.6
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 3.6e-247 858.2 581 75.0
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 3.6e-247 858.2 566 76.7
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 4.7e-247 857.8 564 75.9
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 6.2e-247 857.4 578 75.4
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 4.0e-246 854.7 581 74.4
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 3.4e-245 851.7 558 78.1
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 2.9e-244 848.6 596 72.3
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 3.7e-244 848.2 573 75.9
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 4.9e-244 847.8 553 77.2
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 2.4e-243 845.5 576 74.5
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 7.1e-243 844.0 574 74.9
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 4.6e-242 841.3 576 74.0
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 8.6e-241 837.0 574 74.0
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 1.1e-240 836.6 570 74.7
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 3.3e-240 835.1 619 70.4
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 5.6e-240 834.3 567 75.7
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 9.5e-240 833.6 576 74.1
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 9.5e-240 833.6 574 74.4
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.6e-239 832.8 570 73.7
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 3.6e-239 831.6 578 74.4
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 4.7e-239 831.2 581 73.3
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 8.1e-239 830.5 570 74.6
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 8.1e-239 830.5 573 73.3
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 8.1e-239 830.5 570 74.7
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 1.1e-238 830.1 567 74.6
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 1.1e-238 830.1 576 74.0
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 2.4e-238 828.9 570 73.9
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 2.4e-238 828.9 570 74.7
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 5.2e-238 827.8 586 72.7
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 8.9e-238 827.0 576 73.4
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 2.0e-237 825.9 581 72.6
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 4.4e-237 824.7 574 72.3
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 1.9e-235 819.3 570 73.7
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 7.1e-235 817.4 569 74.0
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 7.1e-235 817.4 569 74.0
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 9.2e-235 817.0 581 72.6
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 2.1e-234 815.8 569 73.8
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 2.1e-234 815.8 578 71.5
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 6.0e-234 814.3 567 73.5
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 5.1e-233 811.2 581 72.5
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 8.6e-233 810.4 567 73.0
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 3.3e-232 808.5 568 75.2
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 1.2e-231 806.6 571 70.8
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 4.7e-231 804.7 568 74.8
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 1.1e-230 803.5 574 74.0
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 1.3e-228 796.6 614 67.9
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 4.9e-228 794.7 549 74.0
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 8.4e-228 793.9 578 70.9
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 8.4e-228 793.9 580 71.2
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 8.4e-228 793.9 576 71.7
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 1.9e-227 792.7 535 74.2
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 3.2e-227 792.0 567 73.0
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 5.4e-227 791.2 567 73.0
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.6e-226 789.6 574 73.0
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 7.8e-226 787.3 548 74.3
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 1.0e-225 786.9 570 71.8
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.3e-225 786.6 558 71.0
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 7.3e-224 780.8 617 67.3
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 1.8e-222 776.2 570 68.8
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 1.2e-221 773.5 570 69.3
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 2.0e-221 772.7 566 71.6
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 2.0e-221 772.7 572 70.5
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 4.5e-221 771.5 570 70.7
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.2e-220 769.2 627 67.0
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.7e-218 762.3 562 71.7
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 1.3e-217 760.0 574 69.2
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 6.7e-217 757.7 647 62.3
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 1.2e-213 746.9 573 67.2
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 8.4e-212 740.7 572 65.7
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 3.1e-206 722.2 591 64.1
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 9.0e-206 720.7 469 78.0
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 2.6e-197 692.6 579 63.9
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 9.3e-195 684.1 494 71.1
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 1.8e-193 679.9 522 64.8
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.8e-191 672.5 495 69.3
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 4.8e-191 671.8 573 59.2
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 6.1e-178 628.2 576 55.9
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 1.3e-175 620.5 578 56.6
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.7e-172 610.1 421 73.4
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 1.5e-163 580.5 394 73.4
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 3.2e-163 579.3 408 71.8
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 5.5e-163 578.6 365 77.5
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 7.2e-163 578.2 374 79.7
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 1.6e-162 577.0 394 73.1
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 8.9e-137 491.5 583 47.2
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 1.6e-133 480.7 548 44.9
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 9.9e-128 461.5 325 73.5
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 3.3e-123 446.4 287 78.0
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 1.2e-114 417.9 335 67.5
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 3.3e-99 366.7 256 71.9
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 3.3e-83 313.5 195 76.9
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 7.7e-72 275.8 215 70.7
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 2.4e-65 254.2 199 68.3
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 4.2e-54 216.9 142 76.1
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 1.6e-45 188.3 167 58.7
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 1.2e-43 182.2 117 76.1
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 4.4e-43 180.3 162 60.5
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 1.6e-37 161.8 204 49.5
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 5.0e-31 140.2 85 87.1
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 1.3e-26 125.6 88 70.5
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 8.3e-26 122.9 82 76.8
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 8.6e-23 112.8 92 57.6
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 7.3e-22 109.8 87 57.5
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 9.5e-22 109.4 79 67.1
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 1.2e-19 102.4 124 47.6
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 5.4e-09 67.0 55 58.2
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 3.3e-06 57.8 112 33.9


User provided reference genes

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