Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G2623 Fragaria x ananassa HOM05D003201 ORTHO05D008805 8.0e-88 327.0 161 100.0
FvH4_3g46100 Fragaria vesca HOM05D003201 ORTHO05D008805 1.9e-84 315.8 161 96.9
FAN11G2508 Fragaria x ananassa HOM05D003201 ORTHO05D008805 5.0e-82 307.8 161 95.7
FAN25G0659 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.5e-78 296.2 153 96.1
RcHm_v2.0_Chr5g0084171 Rosa chinensis HOM05D003201 ORTHO05D008805 2.5e-73 278.9 161 87.0
Prupe.6G000300 Prunus persica HOM05D003201 ORTHO05D008805 1.8e-55 219.5 161 68.3
MD11G1000200 Malus domestica HOM05D003201 ORTHO05D008805 6.7e-50 201.1 162 66.0
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 1.1e-49 200.3 166 68.1
CiPaw.03G255400 Carya illinoinensis HOM05D003201 ORTHO05D008805 1.4e-47 193.4 161 63.4
Haze_24508 Corylus avellana HOM05D003201 ORTHO05D008805 3.1e-47 192.2 161 62.7
Cfa002302 Carpinus fangiana HOM05D003201 ORTHO05D008805 2.6e-46 189.1 161 62.1
Dinv15525 Davidia involucrata HOM05D003201 ORTHO05D008805 9.9e-46 187.2 161 60.9
GSVIVG01034815001 Vitis vinifera HOM05D003201 ORTHO05D008805 3.2e-44 182.2 161 59.6
TAR623G0449 Trochodendron aralioides HOM05D003201 ORTHO05D008805 1.6e-43 179.9 161 61.5
CSS0031904 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008805 2.1e-43 179.5 161 59.6
TWI34G1882 Tripterygium wilfordii HOM05D003201 ORTHO05D008805 3.0e-42 175.6 161 57.8
Actinidia16221 Actinidia chinensis HOM05D003201 ORTHO05D008805 1.5e-41 173.3 161 58.4
Hma1.2p1_1133F.1_g260360 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 3.3e-41 172.2 163 57.1
Hma1.2p1_1133F.1_g260370 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 3.3e-41 172.2 163 57.1
QL04p043008 Quercus lobata HOM05D003201 ORTHO05D008805 1.3e-40 170.2 160 56.9
Gohir.A09G117900 Gossypium hirsutum HOM05D003201 ORTHO05D008805 2.8e-40 169.1 161 55.3
Thecc.05G124600 Theobroma cacao HOM05D003201 ORTHO05D008805 4.8e-40 168.3 161 57.1
Gohir.D09G114700 Gossypium hirsutum HOM05D003201 ORTHO05D008805 6.2e-40 167.9 161 55.3
TPR.G5800 Trifolium pratense HOM05D003201 ORTHO05D008805 8.2e-40 167.5 161 56.5
Manes.18G121700 Manihot esculenta HOM05D003201 ORTHO05D008805 1.8e-39 166.4 162 55.6
Sabra13G0129200 Salix brachista HOM05D003201 ORTHO05D008805 2.4e-39 166.0 162 54.3
Glyma.16G207100 Glycine max HOM05D003201 ORTHO05D008805 4.0e-39 165.2 162 57.4
Ca_25246_v3 Cicer arietinum L. HOM05D003201 ORTHO05D008805 1.5e-38 163.3 159 54.1
Lj2g0011105 Lotus japonicus HOM05D003201 ORTHO05D008805 1.5e-38 163.3 161 55.3
Potri.013G161600 Populus trichocarpa HOM05D003201 ORTHO05D008805 2.6e-38 162.5 162 54.9
Psat1g112800 Pisum sativum HOM05D003201 ORTHO05D008805 3.4e-38 162.2 161 55.9
Medtr6g059320 Medicago truncatula HOM05D003201 ORTHO05D008805 4.5e-38 161.8 161 54.7
Lalb_Chr01g0008671 Lupinus albus HOM05D003201 ORTHO05D008805 1.3e-37 160.2 162 56.8
Eucgr.J01718 Eucalyptus grandis HOM05D003201 ORTHO05D008805 2.9e-37 159.1 161 55.3
PSO339G6265 Papaver somniferum HOM05D003201 ORTHO05D008805 3.8e-37 158.7 162 53.1
Hund07019 Selenicereus undatus HOM05D003201 ORTHO05D008805 8.4e-37 157.5 159 54.1
CANSAT35G1729 Cannabis sativa HOM05D003201 ORTHO05D008805 1.4e-36 156.8 161 55.3
VMungo0464G1483 Vigna mungo HOM05D003201 ORTHO05D008805 1.9e-36 156.4 161 54.7
vmacro04280 Vaccinium macrocarpon HOM05D003201 ORTHO05D008805 5.5e-36 154.8 161 52.2
Phvul.004G131600 Phaseolus vulgaris HOM05D003201 ORTHO05D008805 3.5e-35 152.1 161 54.0
PSO384G0221 Papaver somniferum HOM05D003201 ORTHO05D008805 6.0e-35 151.4 162 51.2
Aqoxy5G03624 Aquilegia oxysepala HOM05D003201 ORTHO05D008805 7.9e-35 151.0 162 54.3
ECA248G3933 Erigeron canadensis HOM05D003201 ORTHO05D008805 1.0e-34 150.6 160 53.8
Cc01_g05060 Coffea canephora HOM05D003201 ORTHO05D008805 2.3e-34 149.4 162 50.0
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 3.0e-34 149.1 165 55.2
Cpa.g.sc30.50 Carica papaya HOM05D003201 ORTHO05D008805 8.7e-34 147.5 161 52.2
Glyma.09G156400 Glycine max HOM05D003201 ORTHO05D008805 2.5e-33 146.0 162 53.1
PGR119G1272 Punica granatum HOM05D003201 ORTHO05D008805 2.5e-33 146.0 164 52.4
HanXRQChr17g0555621 Helianthus annuus HOM05D003201 ORTHO05D008805 3.3e-33 145.6 162 54.3
THA.LOC104806236 Tarenaya hassleriana HOM05D003201 ORTHO05D008805 3.3e-33 145.6 161 52.2
AL7G33540 Arabidopsis lyrata HOM05D003201 ORTHO05D008805 5.7e-33 144.8 161 54.0
MELO3C024592.2 Cucumis melo HOM05D003201 ORTHO05D008805 5.7e-33 144.8 159 51.6
MBI13_g39202_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 5.7e-33 144.8 168 52.4
AT4G20350 Arabidopsis thaliana HOM05D003201 ORTHO05D008805 1.3e-32 143.7 161 54.7
AUR62000916 Chenopodium quinoa HOM05D003201 ORTHO05D008805 1.3e-32 143.7 161 51.6
CsaV3_6G041170 Cucumis sativus L. HOM05D003201 ORTHO05D008805 1.3e-32 143.7 159 50.9
Peaxi162Scf01181g00210 Petunia axillaris HOM05D003201 ORTHO05D008805 2.2e-32 142.9 159 50.9
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 3.7e-32 142.1 161 53.4
ClCG01G015060 Citrullus lanatus HOM05D003201 ORTHO05D008805 3.7e-32 142.1 160 52.5
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 4.8e-32 141.7 161 52.8
CAN.G431.2 Capsicum annuum HOM05D003201 ORTHO05D008805 8.2e-32 141.0 161 50.9
Thhalv10026088m.g Eutrema salsugineum HOM05D003201 ORTHO05D008805 8.2e-32 141.0 161 54.0
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 1.4e-31 140.2 161 53.4
AUR62005054 Chenopodium quinoa HOM05D003201 ORTHO05D008805 3.1e-31 139.0 155 51.6
DCAR_028397 Daucus carota HOM05D003201 ORTHO05D008805 4.1e-31 138.7 166 53.0
Sp7g18690 Schrenkiella parvula HOM05D003201 ORTHO05D008805 4.1e-31 138.7 164 50.0
ATR0068G091 Amborella trichopoda HOM05D003201 ORTHO05D008805 5.3e-31 138.3 162 50.6
Carub.0007s2082 Capsella rubella HOM05D003201 ORTHO05D008805 9.0e-31 137.5 161 52.8
CARHR227170 Cardamine hirsuta HOM05D003201 ORTHO05D008805 9.0e-31 137.5 165 52.1
COL.COLO4_24749 Corchorus olitorius HOM05D003201 ORTHO05D008805 1.2e-30 137.1 159 48.4
Zm00001eb047810 Zea mays HOM05D003201 ORTHO05D008805 1.0e-29 134.0 176 46.0
Sed0008662 Sechium edule HOM05D003201 ORTHO05D008805 1.3e-29 133.7 159 50.3
Sopen01g022430 Solanum pennellii HOM05D003201 ORTHO05D008805 1.3e-29 133.7 161 48.4
Lj1A555G38 Lonicera japonica HOM05D003201 ORTHO05D008805 2.9e-29 132.5 172 49.4
Solyc01g057570.3 Solanum lycopersicum HOM05D003201 ORTHO05D008805 3.8e-29 132.1 161 47.2
Migut.N00525 Erythranthe guttata HOM05D003201 ORTHO05D008805 5.0e-29 131.7 159 49.1
PGSC0003DMG400026601 Solanum tuberosum HOM05D003201 ORTHO05D008805 5.0e-29 131.7 161 48.4
EL10Ac4g09260 Beta vulgaris HOM05D003201 ORTHO05D008805 2.5e-28 129.4 197 43.1
Duzib093G2193 Durio zibethinus HOM05D003201 ORTHO05D008805 2.5e-28 129.4 148 48.6
Rhsim13G0235500 Rhododendron simsii HOM05D003201 ORTHO05D008805 2.5e-28 129.4 140 50.7
Sopen01g019970 Solanum pennellii HOM05D003201 ORTHO05D008805 1.2e-27 127.1 161 47.2
SGA_v2.0_scaffold6G03334 Striga asiatica HOM05D003201 ORTHO05D008805 1.6e-27 126.7 155 51.0
Nitab4.5_0000075g0050 Nicotiana tabacum HOM05D003201 ORTHO05D008805 6.1e-27 124.8 151 51.0
MSTRG.12815 Avicennia marina HOM05D003201 ORTHO05D008805 1.3e-26 123.6 163 46.6
arahy.Tifrunner.gnm1.ann1.F1EX5J Arachis hypogaea HOM05D003201 ORTHO05D008805 3.0e-26 122.5 129 55.0
CDE02G2127 Ceratophyllum demersum HOM05D003201 ORTHO05D008805 6.7e-26 121.3 171 47.4
arahy.Tifrunner.gnm1.ann1.75P5EB Arachis hypogaea HOM05D003201 ORTHO05D008805 8.8e-26 120.9 135 51.9
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 1.9e-25 119.8 154 46.8
Lsat_1_v5_gn_1_71340 Lactuca sativa HOM05D003201 ORTHO05D008805 1.4e-23 113.6 107 56.1
Pp3c2_18510 Physcomitrium patens HOM05D003201 ORTHO05D008805 2.4e-23 112.8 164 42.7
HPP92_021155 Vanilla planifolia HOM05D003201 ORTHO05D008805 6.9e-23 111.3 164 42.7
MBI13_g36948_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 5.9e-22 108.2 148 46.6
SEGI_31075 Sequoiadendron giganteum HOM05D003201 ORTHO05D008805 5.9e-22 108.2 177 41.2
BcaC09g51346 Brassica carinata HOM05D003201 ORTHO05D008805 2.9e-21 105.9 109 53.2
unitig_0.g1143 Utricularia gibba HOM05D003201 ORTHO05D008805 5.0e-21 105.1 161 44.1
Gorai.006G132500 Gossypium raimondii HOM05D003201 ORTHO05D008805 2.5e-20 102.8 90 60.0
Sc18g0002730 Simmondsia chinensis HOM05D003201 ORTHO05D008805 4.2e-20 102.1 100 57.0
Atru.chr2.209 Acer truncatum HOM05D003201 ORTHO05D008805 5.5e-20 101.7 85 60.0
SalBow3G4219 Salvia bowleyana HOM05D003201 ORTHO05D008805 3.6e-19 99.0 102 56.9
Mapoly0007s0017 Marchantia polymorpha HOM05D003201 ORTHO05D008805 3.0e-18 95.9 166 36.7
Os10g0420000 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008805 3.0e-18 95.9 166 39.8
Ciclev10029320m.g Citrus clementina HOM05D003201 ORTHO05D008805 3.7e-16 89.0 85 55.3
Nitab4.5_0005125g0010 Nicotiana tabacum HOM05D003201 ORTHO05D008805 2.9e-13 79.3 86 52.3
SMO147G0005 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 2.9e-13 79.3 167 37.7
SMO132G0004 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 2.5e-12 76.3 167 34.7
MCO03G055 Micromonas commoda HOM05D003201 ORTHO05D008805 8.8e-10 67.8 157 35.0


User provided reference genes

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