Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G2465 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.4e-39 166.0 97 100.0
FAN16G1350 Fragaria x ananassa HOM05D004137 ORTHO05D004804 7.8e-38 160.2 97 93.8
FAN25G2990 Fragaria x ananassa HOM05D004137 ORTHO05D004804 1.9e-36 155.6 97 93.8
RcHm_v2.0_Chr5g0083831 Rosa chinensis HOM05D004137 ORTHO05D004804 1.4e-34 149.4 97 86.6
MD11G1003200 Malus domestica HOM05D004137 ORTHO05D004804 1.3e-29 132.9 97 76.3
CANSAT11G0501 Cannabis sativa HOM05D004137 ORTHO05D004804 5.6e-28 127.5 97 81.4
Prupe.6G003100 Prunus persica HOM05D004137 ORTHO05D004804 1.6e-27 125.9 97 76.3
FvH4_3g45760 Fragaria vesca HOM05D004137 ORTHO05D004804 1.1e-26 123.2 61 100.0
FAN11G0915 Fragaria x ananassa HOM05D004137 ORTHO05D004804 2.4e-26 122.1 61 98.4
QL01p003617 Quercus lobata HOM05D004137 ORTHO05D004804 5.8e-25 117.5 67 80.6
Haze_22939 Corylus avellana HOM05D004137 ORTHO05D004804 1.9e-23 112.5 66 77.3
MD03G1003400 Malus domestica HOM05D004137 ORTHO05D004804 2.7e-22 108.6 97 73.2
CiPaw.13G177400 Carya illinoinensis HOM05D004137 ORTHO05D004804 3.0e-21 105.1 66 71.2
TWI34G1879 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 1.1e-20 103.2 68 69.1
Potri.001G003500 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.5e-20 102.8 69 72.5
Manes.15G109500 Manihot esculenta HOM05D004137 ORTHO05D004804 2.1e-19 99.0 112 48.2
CSS0017288 Camellia sinensis var. sinensis HOM05D004137 ORTHO05D004804 2.8e-19 98.6 65 67.7
Atru.chr3.2107 Acer truncatum HOM05D004137 ORTHO05D004804 3.7e-19 98.2 69 65.2
Nn2g15861 Nelumbo nucifera HOM05D004137 ORTHO05D004804 4.8e-19 97.8 67 67.2
Potri.003G221500 Populus trichocarpa HOM05D004137 ORTHO05D004804 6.2e-19 97.4 69 68.1
TWI60G1175 Tripterygium wilfordii HOM05D004137 ORTHO05D004804 6.2e-19 97.4 67 67.2
Eucgr.B03601 Eucalyptus grandis HOM05D004137 ORTHO05D004804 1.4e-18 96.3 100 63.0
QL04p040762 Quercus lobata HOM05D004137 ORTHO05D004804 2.4e-18 95.5 56 75.0
Nn7g35858 Nelumbo nucifera HOM05D004137 ORTHO05D004804 4.0e-18 94.7 67 67.2
TAR623G1005 Trochodendron aralioides HOM05D004137 ORTHO05D004804 5.3e-18 94.4 66 65.2
Lsat_1_v5_gn_1_68820 Lactuca sativa HOM05D004137 ORTHO05D004804 2.0e-17 92.4 68 64.7
Manes.03G087303 Manihot esculenta HOM05D004137 ORTHO05D004804 3.4e-17 91.7 68 66.2
Hma1.2p1_0241F.1_g100550 Hydrangea macrophylla HOM05D004137 ORTHO05D004804 1.0e-16 90.1 69 62.3
Nitab4.5_0000528g0100 Nicotiana tabacum HOM05D004137 ORTHO05D004804 2.2e-16 89.0 66 65.2
Nitab4.5_0005935g0010 Nicotiana tabacum HOM05D004137 ORTHO05D004804 2.2e-16 89.0 66 65.2
Cpa.g.c44905 Carica papaya HOM05D004137 ORTHO05D004804 2.9e-16 88.6 62 71.0
Ciclev10017215m.g Citrus clementina HOM05D004137 ORTHO05D004804 2.9e-16 88.6 65 64.6
DCAR_023854 Daucus carota HOM05D004137 ORTHO05D004804 3.8e-16 88.2 67 62.7
Carub.0007s1461 Capsella rubella HOM05D004137 ORTHO05D004804 3.2e-15 85.1 68 60.3
CARHR233900 Cardamine hirsuta HOM05D004137 ORTHO05D004804 3.2e-15 85.1 68 60.3
Lj4g0013694 Lotus japonicus HOM05D004137 ORTHO05D004804 3.2e-15 85.1 99 57.6
Solyc11g042440.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 4.2e-15 84.7 61 63.9
Sopen11g018520 Solanum pennellii HOM05D004137 ORTHO05D004804 4.2e-15 84.7 61 63.9
Cc01_g00130 Coffea canephora HOM05D004137 ORTHO05D004804 7.1e-15 84.0 68 61.8
Sed0012847 Sechium edule HOM05D004137 ORTHO05D004804 7.1e-15 84.0 64 65.6
HanXRQChr01g0021421 Helianthus annuus HOM05D004137 ORTHO05D004804 9.3e-15 83.6 61 60.7
ATR0737G017 Amborella trichopoda HOM05D004137 ORTHO05D004804 1.2e-14 83.2 65 63.1
Psat7g063840 Pisum sativum HOM05D004137 ORTHO05D004804 1.2e-14 83.2 67 55.2
Sp7g24280 Schrenkiella parvula HOM05D004137 ORTHO05D004804 1.2e-14 83.2 68 61.8
ECA248G0157 Erigeron canadensis HOM05D004137 ORTHO05D004804 2.7e-14 82.0 61 59.0
Sopen06g023090 Solanum pennellii HOM05D004137 ORTHO05D004804 2.7e-14 82.0 61 65.6
Solyc06g064610.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 3.5e-14 81.6 61 63.9
PGSC0003DMG400037247 Solanum tuberosum HOM05D004137 ORTHO05D004804 3.5e-14 81.6 61 62.3
THA.LOC104811721 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 3.5e-14 81.6 67 58.2
Lsat_1_v5_gn_2_50221 Lactuca sativa HOM05D004137 ORTHO05D004804 6.0e-14 80.9 69 58.0
Migut.N00553 Erythranthe guttata HOM05D004137 ORTHO05D004804 7.9e-14 80.5 61 60.7
PGSC0003DMG400033149 Solanum tuberosum HOM05D004137 ORTHO05D004804 7.9e-14 80.5 60 66.7
AL7G26620 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 1.8e-13 79.3 68 57.4
CAN.G960.46 Capsicum annuum HOM05D004137 ORTHO05D004804 3.9e-13 78.2 67 59.7
Migut.J01885 Erythranthe guttata HOM05D004137 ORTHO05D004804 5.1e-13 77.8 64 62.5
Thhalv10027319m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 1.1e-12 76.6 68 55.9
C07p54810 Brassica napus HOM05D004137 ORTHO05D004804 1.5e-12 76.3 68 58.8
BolC7t45970H Brassica oleracea HOM05D004137 ORTHO05D004804 1.5e-12 76.3 68 58.8
BcaC08g43620 Brassica carinata HOM05D004137 ORTHO05D004804 2.5e-12 75.5 69 52.2
A06p00220 Brassica napus HOM05D004137 ORTHO05D004804 2.5e-12 75.5 69 52.2
C06p10340 Brassica napus HOM05D004137 ORTHO05D004804 2.5e-12 75.5 69 52.2
BolC6t36110H Brassica oleracea HOM05D004137 ORTHO05D004804 2.5e-12 75.5 69 52.2
BraA06t23238Z Brassica rapa HOM05D004137 ORTHO05D004804 2.5e-12 75.5 69 52.2
THA.LOC104810322 Tarenaya hassleriana HOM05D004137 ORTHO05D004804 2.5e-12 75.5 69 52.2
C03p92680 Brassica napus HOM05D004137 ORTHO05D004804 3.3e-12 75.1 69 49.3
HanXRQChr02g0057501 Helianthus annuus HOM05D004137 ORTHO05D004804 3.3e-12 75.1 68 48.5
Medtr8g088460 Medicago truncatula HOM05D004137 ORTHO05D004804 4.3e-12 74.7 67 52.2
BcaC01g01518 Brassica carinata HOM05D004137 ORTHO05D004804 5.7e-12 74.3 69 49.3
BolC3t21580H Brassica oleracea HOM05D004137 ORTHO05D004804 5.7e-12 74.3 69 49.3
Thhalv10011858m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 5.7e-12 74.3 69 49.3
PGR102G2770 Punica granatum HOM05D004137 ORTHO05D004804 7.4e-12 73.9 68 55.9
A08p00680 Brassica napus HOM05D004137 ORTHO05D004804 9.7e-12 73.6 69 46.4
BraA08t32126Z Brassica rapa HOM05D004137 ORTHO05D004804 9.7e-12 73.6 69 46.4
Carub.0001s4388 Capsella rubella HOM05D004137 ORTHO05D004804 9.7e-12 73.6 69 47.8
Solyc10g078570.1 Solanum lycopersicum HOM05D004137 ORTHO05D004804 9.7e-12 73.6 67 55.2
PGSC0003DMG400008382 Solanum tuberosum HOM05D004137 ORTHO05D004804 9.7e-12 73.6 67 55.2
BcaC08g44196 Brassica carinata HOM05D004137 ORTHO05D004804 1.3e-11 73.2 69 49.3
A05p17500 Brassica napus HOM05D004137 ORTHO05D004804 1.3e-11 73.2 69 49.3
BolC6t36802H Brassica oleracea HOM05D004137 ORTHO05D004804 1.3e-11 73.2 69 49.3
ClCG02G024390 Citrullus lanatus HOM05D004137 ORTHO05D004804 1.3e-11 73.2 60 65.0
Lalb_Chr13g0295561 Lupinus albus HOM05D004137 ORTHO05D004804 1.3e-11 73.2 97 43.3
AT5G56520 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 1.6e-11 72.8 68 51.5
Lsat_1_v5_gn_1_59720 Lactuca sativa HOM05D004137 ORTHO05D004804 1.6e-11 72.8 67 50.7
SGA_v2.0_scaffold3G01677 Striga asiatica HOM05D004137 ORTHO05D004804 1.6e-11 72.8 61 55.7
Manes.08G144511 Manihot esculenta HOM05D004137 ORTHO05D004804 2.8e-11 72.0 61 60.7
AL1G63420 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 3.7e-11 71.6 69 47.8
AL8G32280 Arabidopsis lyrata HOM05D004137 ORTHO05D004804 3.7e-11 71.6 68 51.5
CARHR045030 Cardamine hirsuta HOM05D004137 ORTHO05D004804 4.8e-11 71.2 69 44.9
BcaNung02428 Brassica carinata HOM05D004137 ORTHO05D004804 6.3e-11 70.9 68 55.9
AT1G55365 Arabidopsis thaliana HOM05D004137 ORTHO05D004804 8.2e-11 70.5 69 46.4
BcaC06g32758 Brassica carinata HOM05D004137 ORTHO05D004804 8.2e-11 70.5 68 54.4
BraA03t14731Z Brassica rapa HOM05D004137 ORTHO05D004804 8.2e-11 70.5 68 54.4
BcaC09g50691 Brassica carinata HOM05D004137 ORTHO05D004804 1.1e-10 70.1 68 52.9
A03p56610 Brassica napus HOM05D004137 ORTHO05D004804 1.1e-10 70.1 68 54.4
BcaB04g16959 Brassica carinata HOM05D004137 ORTHO05D004804 1.4e-10 69.7 69 49.3
Gohir.A12G175500 Gossypium hirsutum HOM05D004137 ORTHO05D004804 1.4e-10 69.7 63 54.0
C01p22180 Brassica napus HOM05D004137 ORTHO05D004804 1.8e-10 69.3 68 52.9
BraA01t01711Z Brassica rapa HOM05D004137 ORTHO05D004804 1.8e-10 69.3 68 52.9
unitig_0.g1150 Utricularia gibba HOM05D004137 ORTHO05D004804 1.8e-10 69.3 67 52.2
BolC1t02148H Brassica oleracea HOM05D004137 ORTHO05D004804 2.4e-10 68.9 68 51.5
Thhalv10015369m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 3.1e-10 68.6 68 48.5
Ah.13g075420 Amaranthus hybridus HOM05D004137 ORTHO05D004804 5.3e-10 67.8 100 50.0
Gohir.D12G178750 Gossypium hirsutum HOM05D004137 ORTHO05D004804 5.3e-10 67.8 63 54.0
Manes.09G141000 Manihot esculenta HOM05D004137 ORTHO05D004804 5.3e-10 67.8 61 57.4
A10p13890 Brassica napus HOM05D004137 ORTHO05D004804 6.9e-10 67.4 64 51.6
BraA10t43481Z Brassica rapa HOM05D004137 ORTHO05D004804 6.9e-10 67.4 64 51.6
CARHR270170 Cardamine hirsuta HOM05D004137 ORTHO05D004804 9.0e-10 67.0 68 48.5
Gorai.008G191500 Gossypium raimondii HOM05D004137 ORTHO05D004804 9.0e-10 67.0 63 52.4
Sp1g41045 Schrenkiella parvula HOM05D004137 ORTHO05D004804 9.0e-10 67.0 69 49.3
Potri.013G057832 Populus trichocarpa HOM05D004137 ORTHO05D004804 1.2e-09 66.6 69 52.2
Lalb_Chr07g0185901 Lupinus albus HOM05D004137 ORTHO05D004804 2.6e-09 65.5 99 40.4
Aa31LG3G12400 Aethionema arabicum HOM05D004137 ORTHO05D004804 3.4e-09 65.1 68 44.1
Carub.0008s1700 Capsella rubella HOM05D004137 ORTHO05D004804 3.4e-09 65.1 65 47.7
arahy.Tifrunner.gnm1.ann1.K19UZV Arachis hypogaea HOM05D004137 ORTHO05D004804 4.5e-09 64.7 53 62.3
Phvul.002G247400 Phaseolus vulgaris HOM05D004137 ORTHO05D004804 4.5e-09 64.7 96 49.0
A01p17580 Brassica napus HOM05D004137 ORTHO05D004804 5.9e-09 64.3 68 51.5
Cc06_g23020 Coffea canephora HOM05D004137 ORTHO05D004804 5.9e-09 64.3 62 54.8
C03p15600 Brassica napus HOM05D004137 ORTHO05D004804 7.6e-09 63.9 63 47.6
Potri.013G057766 Populus trichocarpa HOM05D004137 ORTHO05D004804 7.6e-09 63.9 65 50.8
BcaC03g14217 Brassica carinata HOM05D004137 ORTHO05D004804 1.3e-08 63.2 65 46.2
C02p15170 Brassica napus HOM05D004137 ORTHO05D004804 1.3e-08 63.2 65 46.2
BcaC04g20079 Brassica carinata HOM05D004137 ORTHO05D004804 1.7e-08 62.8 63 49.2
C09p48110 Brassica napus HOM05D004137 ORTHO05D004804 1.7e-08 62.8 63 49.2
BolC9t57661H Brassica oleracea HOM05D004137 ORTHO05D004804 1.7e-08 62.8 63 49.2
Ciclev10023092m.g Citrus clementina HOM05D004137 ORTHO05D004804 2.9e-08 62.0 58 51.7
HPP92_015924 Vanilla planifolia HOM05D004137 ORTHO05D004804 3.8e-08 61.6 65 52.3
Glyma.08G125200 Glycine max HOM05D004137 ORTHO05D004804 8.5e-08 60.5 66 50.0
BolC3t13997H Brassica oleracea HOM05D004137 ORTHO05D004804 1.1e-07 60.1 61 47.5
vmacro20990 Vaccinium macrocarpon HOM05D004137 ORTHO05D004804 3.2e-07 58.5 63 52.4
VMungo1383G2992 Vigna mungo HOM05D001291 ORTHO05D004804 3.2e-07 58.5 96 38.5
Thhalv10022151m.g Eutrema salsugineum HOM05D004137 ORTHO05D004804 4.2e-07 58.2 60 50.0
Aa31LG10G1170 Aethionema arabicum HOM05D004137 ORTHO05D004804 5.5e-07 57.8 69 42.0
BcaB02g10824 Brassica carinata HOM05D004137 ORTHO05D004804 2.7e-06 55.5 69 42.0
A05p35990 Brassica napus HOM05D004137 ORTHO05D004804 2.7e-06 55.5 67 46.3
BraA05t22405Z Brassica rapa HOM05D004137 ORTHO05D004804 2.7e-06 55.5 67 46.3
Lalb_Chr14g0364521 Lupinus albus HOM05D004137 ORTHO05D004804 2.7e-06 55.5 57 49.1
BcaB01g04405 Brassica carinata HOM05D004137 ORTHO05D004804 4.6e-06 54.7 58 48.3
Cpa.g.sc51.119 Carica papaya HOM05D004137 ORTHO05D004804 6.1e-06 54.3 61 47.5


User provided reference genes

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