Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G2441 Fragaria x ananassa HOM05D005932 ORTHO05D006213 1.8e-64 249.2 135 100.0
FvH4_3g10110 Fragaria vesca HOM05D005932 ORTHO05D006213 7.5e-55 217.2 142 88.0
FAN11G2171 Fragaria x ananassa HOM05D005932 ORTHO05D006213 2.9e-54 215.3 141 87.9
FAN16G0402 Fragaria x ananassa HOM05D005932 ORTHO05D006213 9.2e-53 210.3 131 90.8
FAN25G3656 Fragaria x ananassa HOM05D005932 ORTHO05D006213 9.5e-42 173.7 106 92.5
RcHm_v2.0_Chr5g0016051 Rosa chinensis HOM05D005932 ORTHO05D006213 1.9e-34 149.4 149 66.4
Prupe.4G090500 Prunus persica HOM05D005932 ORTHO05D006213 2.1e-25 119.4 130 56.2
MD10G1253000 Malus domestica HOM05D005932 ORTHO05D006213 3.4e-23 112.1 140 55.7
MD05G1272900 Malus domestica HOM05D005932 ORTHO05D006213 1.8e-19 99.8 125 55.2
Atru.chr10.845 Acer truncatum HOM05D005932 ORTHO05D006213 1.5e-18 96.7 132 47.7
Manes.14G123400 Manihot esculenta HOM05D005932 ORTHO05D006213 5.6e-18 94.7 133 44.4
Manes.06G068200 Manihot esculenta HOM05D005932 ORTHO05D006213 9.6e-18 94.0 139 45.3
ClCG03G006250 Citrullus lanatus HOM05D005932 ORTHO05D006213 4.0e-16 88.6 119 44.5
Thecc.06G002100 Theobroma cacao HOM05D005932 ORTHO05D006213 5.3e-16 88.2 117 47.9
Duzib235G1239 Durio zibethinus HOM05D005932 ORTHO05D006213 6.9e-16 87.8 124 44.4
CANSAT35G0096 Cannabis sativa HOM05D005932 ORTHO05D006213 1.5e-15 86.7 144 45.1
COL.COLO4_26835 Corchorus olitorius HOM05D005932 ORTHO05D006213 1.5e-15 86.7 125 47.2
MBI18_g11291_MAGBIO Magnolia biondii HOM05D005932 ORTHO05D006213 2.6e-15 85.9 128 46.1
Sed0024512 Sechium edule HOM05D005932 ORTHO05D006213 4.5e-15 85.1 118 46.6
Sed0022461 Sechium edule HOM05D005932 ORTHO05D006213 5.8e-15 84.7 117 44.4
Gohir.D02G103800 Gossypium hirsutum HOM05D005932 ORTHO05D006213 4.9e-14 81.6 120 45.0
Nitab4.5_0005178g0030 Nicotiana tabacum HOM05D005932 ORTHO05D006213 8.4e-14 80.9 140 37.1
CiPaw.09G141700 Carya illinoinensis HOM05D005932 ORTHO05D006213 1.4e-13 80.1 129 40.3
Gohir.A03G081000 Gossypium hirsutum HOM05D005932 ORTHO05D006213 1.4e-13 80.1 110 46.4
Gohir.D10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 1.9e-13 79.7 139 41.0
Gorai.005G117900 Gossypium raimondii HOM05D005932 ORTHO05D006213 1.9e-13 79.7 112 46.4
Dinv10792 Davidia involucrata HOM05D005932 ORTHO05D006213 4.2e-13 78.6 101 49.5
Sabra11G0088800 Salix brachista HOM05D005932 ORTHO05D006213 5.5e-13 78.2 131 38.2
Gohir.A10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 7.1e-13 77.8 139 39.6
Gorai.011G004600 Gossypium raimondii HOM05D005932 ORTHO05D006213 9.3e-13 77.4 139 39.6
Hma1.2p1_0067F.1_g037010 Hydrangea macrophylla HOM05D005932 ORTHO05D006213 1.2e-12 77.0 129 41.1
PGSC0003DMG400011812 Solanum tuberosum HOM05D005932 ORTHO05D006213 1.2e-12 77.0 130 40.0
PGR083G0615 Punica granatum HOM05D005932 ORTHO05D006213 1.6e-12 76.6 130 40.8
Eucgr.D00155 Eucalyptus grandis HOM05D005932 ORTHO05D006213 2.1e-12 76.3 139 40.3
TWI38G2281 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 2.1e-12 76.3 128 46.1
Rhsim02G0161400 Rhododendron simsii HOM05D005932 ORTHO05D006213 2.7e-12 75.9 133 34.6
Manes.05G115000 Manihot esculenta HOM05D005932 ORTHO05D006213 4.6e-12 75.1 132 39.4
CsaV3_1G037320 Cucumis sativus L. HOM05D005932 ORTHO05D006213 6.0e-12 74.7 106 45.3
Solyc02g024010.1 Solanum lycopersicum HOM05D005932 ORTHO05D006213 6.0e-12 74.7 136 37.5
Cfa000817 Carpinus fangiana HOM05D005932 ORTHO05D006213 7.9e-12 74.3 126 42.1
CSS0012768 Camellia sinensis var. sinensis HOM05D005932 ORTHO05D006213 1.0e-11 73.9 127 33.9
Haze_05823 Corylus avellana HOM05D005932 ORTHO05D006213 1.0e-11 73.9 138 39.9
CiPaw.10G109100 Carya illinoinensis HOM05D005932 ORTHO05D006213 1.3e-11 73.6 115 45.2
Nitab4.5_0004734g0050 Nicotiana tabacum HOM05D005932 ORTHO05D006213 1.8e-11 73.2 129 38.0
VMungo0540G1966 Vigna mungo HOM05D005932 ORTHO05D006213 2.3e-11 72.8 130 40.0
DCAR_003852 Daucus carota HOM05D005932 ORTHO05D006213 3.0e-11 72.4 125 36.8
Glyma.05G166000 Glycine max HOM05D005932 ORTHO05D006213 3.0e-11 72.4 130 39.2
SGA_v2.0_scaffold1G00270 Striga asiatica HOM05D005932 ORTHO05D006213 3.9e-11 72.0 132 41.7
Potri.011G095000 Populus trichocarpa HOM05D005932 ORTHO05D006213 5.1e-11 71.6 134 35.8
Sopen02g006750 Solanum pennellii HOM05D005932 ORTHO05D006213 1.1e-10 70.5 136 37.5
VMungo0251G2717 Vigna mungo HOM05D005932 ORTHO05D006213 1.1e-10 70.5 132 39.4
Glyma.08G124100 Glycine max HOM05D005932 ORTHO05D006213 1.9e-10 69.7 116 41.4
Phvul.002G246500 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 1.9e-10 69.7 131 37.4
Eucgr.D00169 Eucalyptus grandis HOM05D005932 ORTHO05D006213 3.3e-10 68.9 127 33.9
TAR626G0301 Trochodendron aralioides HOM05D005932 ORTHO05D006213 4.3e-10 68.6 128 36.7
Actinidia31387 Actinidia chinensis HOM05D005932 ORTHO05D006213 5.6e-10 68.2 126 38.1
Ca_17852_v3 Cicer arietinum L. HOM05D005932 ORTHO05D006213 5.6e-10 68.2 116 38.8
TWI15G0856 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 7.4e-10 67.8 127 38.6
Duzib192G0542 Durio zibethinus HOM05D005932 ORTHO05D006213 9.6e-10 67.4 109 42.2
SGA_v2.0_scaffold223G42865 Striga asiatica HOM05D005932 ORTHO05D006213 1.3e-09 67.0 141 36.2
Peaxi162Scf00395g00004 Petunia axillaris HOM05D005932 ORTHO05D006213 2.1e-09 66.2 120 40.0
ECA238G1329 Erigeron canadensis HOM05D005932 ORTHO05D006213 2.8e-09 65.9 123 40.7
Lalb_Chr18g0057981 Lupinus albus HOM05D005932 ORTHO05D006213 3.7e-09 65.5 123 35.8
SalBow8G0055 Salvia bowleyana HOM05D005932 ORTHO05D006213 3.7e-09 65.5 113 43.4
Lj1P1161T30 Lonicera japonica HOM05D005932 ORTHO05D006213 6.2e-09 64.7 110 41.8
Migut.M01897 Erythranthe guttata HOM05D005932 ORTHO05D006213 1.4e-08 63.5 127 40.9
Lj2P330T27 Lonicera japonica HOM05D005932 ORTHO05D006213 2.4e-08 62.8 122 35.2
Actinidia32363 Actinidia chinensis HOM05D005932 ORTHO05D006213 5.3e-08 61.6 115 43.5
MSTRG.13271 Avicennia marina HOM05D005932 ORTHO05D006213 5.3e-08 61.6 125 34.4
Lj4g0014090 Lotus japonicus HOM05D005932 ORTHO05D006213 5.3e-08 61.6 132 37.9
unitig_37.g12073 Utricularia gibba HOM05D005932 ORTHO05D006213 5.3e-08 61.6 123 38.2
Thhalv10009012m.g Eutrema salsugineum HOM05D012212 ORTHO05D006213 6.9e-08 61.2 126 38.9
TPR.G6729 Trifolium pratense HOM05D005932 ORTHO05D006213 6.9e-08 61.2 126 31.7
TWI63G1224 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 1.5e-07 60.1 109 41.3
unitig_92.g28172 Utricularia gibba HOM05D005932 ORTHO05D006213 1.5e-07 60.1 126 38.9
BcaNung00838 Brassica carinata HOM05D005932 ORTHO05D006213 2.0e-07 59.7 111 37.8
BcaNung00840 Brassica carinata HOM05D005932 ORTHO05D006213 2.0e-07 59.7 111 37.8
BolC7t45634H Brassica oleracea HOM05D005932 ORTHO05D006213 2.0e-07 59.7 111 37.8
Migut.H01328 Erythranthe guttata HOM05D005932 ORTHO05D006213 2.0e-07 59.7 124 37.9
Nitab4.5_0004615g0090 Nicotiana tabacum HOM05D005932 ORTHO05D006213 2.0e-07 59.7 117 41.0
Medtr8g088330 Medicago truncatula HOM05D005932 ORTHO05D006213 2.6e-07 59.3 116 32.8
Sed0018131 Sechium edule HOM05D005932 ORTHO05D006213 2.6e-07 59.3 115 38.3
Lsat_1_v5_gn_2_93200 Lactuca sativa HOM05D005932 ORTHO05D006213 3.4e-07 58.9 122 36.9
BcaC06g30675 Brassica carinata HOM05D005932 ORTHO05D006213 4.5e-07 58.5 116 37.9
ClCG01G025150 Citrullus lanatus HOM05D005932 ORTHO05D006213 4.5e-07 58.5 125 35.2
Potri.001G371800 Populus trichocarpa HOM05D005932 ORTHO05D006213 4.5e-07 58.5 112 43.8
Sp7g19900 Schrenkiella parvula HOM05D005932 ORTHO05D006213 7.6e-07 57.8 115 41.7
Sopen02g019050 Solanum pennellii HOM05D005932 ORTHO05D006213 7.6e-07 57.8 132 36.4
BcaB07g32687 Brassica carinata HOM05D012212 ORTHO05D006213 1.0e-06 57.4 122 36.1
C05p29520 Brassica napus HOM05D012212 ORTHO05D006213 1.0e-06 57.4 122 36.1
BolC5t31682H Brassica oleracea HOM05D012212 ORTHO05D006213 1.0e-06 57.4 122 36.1
Lalb_Chr07g0185951 Lupinus albus HOM05D005932 ORTHO05D006213 1.0e-06 57.4 126 33.3
A03p52900 Brassica napus HOM05D005932 ORTHO05D006213 1.7e-06 56.6 113 37.2
MSTRG.16291 Avicennia marina HOM05D005932 ORTHO05D006213 2.2e-06 56.2 128 37.5
MELO3C002809.2 Cucumis melo HOM05D005932 ORTHO05D006213 2.2e-06 56.2 99 38.4
Nn3g20198 Nelumbo nucifera HOM05D005932 ORTHO05D006213 2.2e-06 56.2 137 32.1
ATR0165G002 Amborella trichopoda HOM05D005932 ORTHO05D006213 2.9e-06 55.8 107 37.4
BcaB07g32663 Brassica carinata HOM05D012212 ORTHO05D006213 2.9e-06 55.8 125 39.2
C07p51350 Brassica napus HOM05D005932 ORTHO05D006213 6.5e-06 54.7 114 36.8
BraA03t14366Z Brassica rapa HOM05D005932 ORTHO05D006213 6.5e-06 54.7 113 37.2
Medtr2g030220 Medicago truncatula HOM05D005932 ORTHO05D006213 6.5e-06 54.7 133 36.1
Psat1g167520 Pisum sativum HOM05D005932 ORTHO05D006213 6.5e-06 54.7 113 38.9
A09p35930 Brassica napus HOM05D012212 ORTHO05D006213 8.4e-06 54.3 125 36.0
Phvul.006G128300 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 8.4e-06 54.3 126 32.5
Psat7g064920 Pisum sativum HOM05D005932 ORTHO05D006213 8.4e-06 54.3 123 30.1
THA.LOC104798624 Tarenaya hassleriana HOM05D012212 ORTHO05D006213 8.4e-06 54.3 124 36.3


User provided reference genes

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