Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G2439 Fragaria x ananassa HOM05D004391 ORTHO05D005193 5.5e-57 224.2 121 100.0
FvH4_3g40960 Fragaria vesca HOM05D004391 ORTHO05D005193 2.9e-34 148.7 72 97.2
FAN11G0346 Fragaria x ananassa HOM05D004391 ORTHO05D005193 2.9e-34 148.7 72 97.2
FAN16G3113 Fragaria x ananassa HOM05D004391 ORTHO05D005193 2.9e-34 148.7 72 97.2
FAN25G0672 Fragaria x ananassa HOM05D004391 ORTHO05D000090 5.0e-34 147.9 71 97.2
RcHm_v2.0_Chr5g0073771 Rosa chinensis HOM05D004391 ORTHO05D005193 1.4e-31 139.8 72 90.3
FvH4_4g07960 Fragaria vesca HOM05D004391 ORTHO05D005193 7.0e-28 127.5 72 80.6
HPP92_003137 Vanilla planifolia HOM05D004391 ORTHO05D005193 3.5e-27 125.2 72 76.4
Cpa.g.sc2.267 Carica papaya HOM05D004391 ORTHO05D005193 4.6e-27 124.8 72 77.8
CiPaw.05G185700 Carya illinoinensis HOM05D004391 ORTHO05D005193 7.8e-27 124.0 72 76.4
HPP92_000080 Vanilla planifolia HOM05D004391 ORTHO05D005193 7.8e-27 124.0 70 75.7
Dinv12291 Davidia involucrata HOM05D000139 ORTHO05D000103 1.0e-26 123.6 116 56.9
Prupe.6G038800 Prunus persica HOM05D004391 ORTHO05D005193 2.3e-26 122.5 72 77.8
Duzib114G0048 Durio zibethinus HOM05D004391 ORTHO05D005193 3.0e-26 122.1 72 77.8
Nn5g26793 Nelumbo nucifera HOM05D004391 ORTHO05D005193 3.9e-26 121.7 72 77.8
Peaxi162Scf00131g10129 Petunia axillaris HOM05D004391 ORTHO05D005193 5.0e-26 121.3 72 75.0
Manes.18G125100 Manihot esculenta HOM05D004391 ORTHO05D005193 8.6e-26 120.6 72 77.8
unitig_747.g21439 Utricularia gibba HOM05D001024 ORTHO05D000878 8.6e-26 120.6 72 73.6
Ciclev10033444m.g Citrus clementina HOM05D004391 ORTHO05D005193 1.1e-25 120.2 72 75.0
Eucgr.G03166 Eucalyptus grandis HOM05D004391 ORTHO05D005193 1.5e-25 119.8 72 76.4
Nitab4.5_0000311g0070 Nicotiana tabacum HOM05D004391 ORTHO05D005193 1.5e-25 119.8 72 73.6
Nn5g27585 Nelumbo nucifera HOM05D004391 ORTHO05D005193 1.9e-25 119.4 72 76.4
Solyc06g007540.3 Solanum lycopersicum HOM05D004391 ORTHO05D005193 1.9e-25 119.4 72 72.2
Sopen06g002450 Solanum pennellii HOM05D004391 ORTHO05D005193 1.9e-25 119.4 72 72.2
Ciclev10010097m.g Citrus clementina HOM05D004391 ORTHO05D005193 2.5e-25 119.0 72 73.6
Nitab4.5_0000105g0300 Nicotiana tabacum HOM05D004391 ORTHO05D005193 2.5e-25 119.0 72 73.6
Oeu025053.1 Olea europaea HOM05D004391 ORTHO05D005193 2.5e-25 119.0 72 76.4
Peaxi162Scf00455g00003 Petunia axillaris HOM05D004391 ORTHO05D005193 2.5e-25 119.0 72 73.6
Potri.019G132000 Populus trichocarpa HOM05D004391 ORTHO05D005193 3.3e-25 118.6 72 73.6
CARHR207860 Cardamine hirsuta HOM05D004391 ORTHO05D005193 4.3e-25 118.2 72 72.2
Gohir.D13G008800 Gossypium hirsutum HOM05D004391 ORTHO05D005193 4.3e-25 118.2 72 73.6
Gorai.012G013200 Gossypium raimondii HOM05D004391 ORTHO05D005193 4.3e-25 118.2 71 74.6
CSS0038074 Camellia sinensis var. sinensis HOM05D004391 ORTHO05D005193 5.6e-25 117.9 72 72.2
Duzib128G1816 Durio zibethinus HOM05D004391 ORTHO05D005193 5.6e-25 117.9 72 73.6
MD03G1047800 Malus domestica HOM05D004391 ORTHO05D005193 5.6e-25 117.9 72 72.2
Solyc06g082680.4 Solanum lycopersicum HOM05D004391 ORTHO05D005193 5.6e-25 117.9 72 70.8
Sopen06g034070 Solanum pennellii HOM05D004391 ORTHO05D005193 5.6e-25 117.9 72 70.8
GSVIVG01024232001 Vitis vinifera HOM05D004391 ORTHO05D005193 5.6e-25 117.9 72 70.8
Gohir.A05G404700 Gossypium hirsutum HOM05D004391 ORTHO05D005193 7.3e-25 117.5 72 72.2
Nitab4.5_0003194g0030 Nicotiana tabacum HOM05D004391 ORTHO05D005193 7.3e-25 117.5 72 72.2
Sc15g0002370 Simmondsia chinensis HOM05D004391 ORTHO05D005193 7.3e-25 117.5 72 70.8
TAR633G0676 Trochodendron aralioides HOM05D004391 ORTHO05D005193 7.3e-25 117.5 91 63.7
Gohir.A13G008200 Gossypium hirsutum HOM05D004391 ORTHO05D005193 9.5e-25 117.1 72 72.2
Gohir.D04G011000 Gossypium hirsutum HOM05D004391 ORTHO05D005193 9.5e-25 117.1 72 72.2
PGSC0003DMG400030477 Solanum tuberosum HOM05D004391 ORTHO05D005193 1.2e-24 116.7 72 69.4
GSVIVG01024535001 Vitis vinifera HOM05D004391 ORTHO05D005193 1.2e-24 116.7 72 70.8
CSS0036971 Camellia sinensis var. sinensis HOM05D004391 ORTHO05D005193 1.6e-24 116.3 72 72.2
Cfa009172 Carpinus fangiana HOM05D004391 ORTHO05D005193 1.6e-24 116.3 72 70.8
TWI09G0083 Tripterygium wilfordii HOM05D004391 ORTHO05D005193 1.6e-24 116.3 72 73.6
TWI53G1180 Tripterygium wilfordii HOM05D004391 ORTHO05D005193 1.6e-24 116.3 72 72.2
Ciclev10013576m.g Citrus clementina HOM05D004391 ORTHO05D005193 2.1e-24 115.9 72 72.2
THA.LOC104823167 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 2.1e-24 115.9 72 75.0
BcaC06g32250 Brassica carinata HOM05D004391 ORTHO05D005193 2.8e-24 115.5 72 70.8
A10p30830 Brassica napus HOM05D004391 ORTHO05D005193 2.8e-24 115.5 72 70.8
C09p71330 Brassica napus HOM05D004391 ORTHO05D005193 2.8e-24 115.5 72 70.8
BolC9t59895H Brassica oleracea HOM05D004391 ORTHO05D005193 2.8e-24 115.5 72 70.8
BraA10t45125Z Brassica rapa HOM05D004391 ORTHO05D005193 2.8e-24 115.5 72 70.8
AL6G15270 Arabidopsis lyrata HOM05D004391 ORTHO05D005193 3.6e-24 115.2 72 72.2
AT5G05370 Arabidopsis thaliana HOM05D004391 ORTHO05D005193 3.6e-24 115.2 72 72.2
Sp6g37680 Schrenkiella parvula HOM05D004391 ORTHO05D005193 4.7e-24 114.8 72 69.4
THA.LOC104816504 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 4.7e-24 114.8 72 75.0
Aa31LG3G3850 Aethionema arabicum HOM05D004391 ORTHO05D005193 6.2e-24 114.4 72 72.2
Cc01_g15470 Coffea canephora HOM05D004391 ORTHO05D005193 6.2e-24 114.4 72 68.1
THA.LOC109117202 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 6.2e-24 114.4 72 73.6
TAR369G0568 Trochodendron aralioides HOM05D004391 ORTHO05D005193 6.2e-24 114.4 72 72.2
Carub.0006s0430 Capsella rubella HOM05D004391 ORTHO05D005193 8.0e-24 114.0 72 69.4
Thhalv10015196m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 8.0e-24 114.0 72 70.8
Glyma.14G206700 Glycine max HOM05D004391 ORTHO05D005193 8.0e-24 114.0 72 70.8
Lsat_1_v5_gn_5_177220 Lactuca sativa HOM05D004391 ORTHO05D005193 8.0e-24 114.0 72 65.3
LjContig00141g0006354 Lotus japonicus HOM05D004391 ORTHO05D005193 8.0e-24 114.0 72 73.6
RcHm_v2.0_Chr4g0441891 Rosa chinensis HOM05D004391 ORTHO05D005193 8.0e-24 114.0 72 69.4
Aa31LG11G6460 Aethionema arabicum HOM05D004391 ORTHO05D005193 1.0e-23 113.6 72 69.4
A03p02270 Brassica napus HOM05D004391 ORTHO05D005193 1.0e-23 113.6 72 69.4
CAN.G181.27 Capsicum annuum HOM05D004391 ORTHO05D005193 1.0e-23 113.6 72 70.8
PGR142G4161 Punica granatum HOM05D004391 ORTHO05D005193 1.0e-23 113.6 72 69.4
Sp6g37450 Schrenkiella parvula HOM05D004391 ORTHO05D005193 1.0e-23 113.6 72 69.4
arahy.Tifrunner.gnm1.ann1.M2MMUV Arachis hypogaea HOM05D004391 ORTHO05D005193 1.4e-23 113.2 72 70.8
Thhalv10015197m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 1.4e-23 113.2 72 68.1
Thecc.10G186500 Theobroma cacao HOM05D004391 ORTHO05D005193 1.4e-23 113.2 72 68.1
MD16G1095600 Malus domestica HOM05D004391 ORTHO05D005193 1.8e-23 112.8 72 69.4
AT3G10860 Arabidopsis thaliana HOM05D004391 ORTHO05D005193 2.3e-23 112.5 72 72.2
CANSAT80G1344 Cannabis sativa HOM05D004391 ORTHO05D005193 2.3e-23 112.5 70 72.9
Carub.0003s1010 Capsella rubella HOM05D004391 ORTHO05D005193 2.3e-23 112.5 72 72.2
Glyma.02G237700 Glycine max HOM05D004391 ORTHO05D005193 2.3e-23 112.5 72 69.4
BcaB01g05713 Brassica carinata HOM05D004391 ORTHO05D005193 3.1e-23 112.1 72 68.1
CARHR085430 Cardamine hirsuta HOM05D004391 ORTHO05D005193 3.1e-23 112.1 72 70.8
Haze_12207 Corylus avellana HOM05D004391 ORTHO05D005193 3.1e-23 112.1 72 69.4
HanXRQChr05g0158631 Helianthus annuus HOM05D004391 ORTHO05D005193 3.1e-23 112.1 72 63.9
Os06g0175900 Oryza sativa ssp. japonica HOM05D004391 ORTHO05D005193 3.1e-23 112.1 72 69.4
Os06g0177000 Oryza sativa ssp. japonica HOM05D004391 ORTHO05D005193 3.1e-23 112.1 72 69.4
BolC1t05350H Brassica oleracea HOM05D004391 ORTHO05D005193 4.0e-23 111.7 72 69.4
CAN.G874.64 Capsicum annuum HOM05D004391 ORTHO05D005193 4.0e-23 111.7 72 66.7
ECA248G3374 Erigeron canadensis HOM05D004391 ORTHO05D005193 4.0e-23 111.7 72 65.3
Phvul.008G244100 Phaseolus vulgaris HOM05D004391 ORTHO05D005193 4.0e-23 111.7 72 69.4
QL03p059558 Quercus lobata HOM05D004391 ORTHO05D005193 4.0e-23 111.7 94 58.5
AUR62013781 Chenopodium quinoa HOM05D004391 ORTHO05D005193 5.2e-23 111.3 72 65.3
COL.COLO4_19488 Corchorus olitorius HOM05D004391 ORTHO05D005193 5.2e-23 111.3 72 70.8
MELO3C010670.2 Cucumis melo HOM05D004391 ORTHO05D005193 5.2e-23 111.3 72 70.8
BraA01t04219Z Brassica rapa HOM05D004391 ORTHO05D005193 6.8e-23 110.9 72 69.4
Thhalv10021877m.g Eutrema salsugineum HOM05D004391 ORTHO05D005193 6.8e-23 110.9 72 69.4
A05p38380 Brassica napus HOM05D004391 ORTHO05D005193 8.9e-23 110.5 72 69.4
C05p57280 Brassica napus HOM05D004391 ORTHO05D005193 8.9e-23 110.5 72 69.4
BolC5t34384H Brassica oleracea HOM05D004391 ORTHO05D005193 8.9e-23 110.5 72 69.4
BraA05t22629Z Brassica rapa HOM05D004391 ORTHO05D005193 8.9e-23 110.5 72 69.4
MD13G1094500 Malus domestica HOM05D004391 ORTHO05D005193 8.9e-23 110.5 72 68.1
Prupe.1G250900 Prunus persica HOM05D004391 ORTHO05D005193 8.9e-23 110.5 72 69.4
AL3G22380 Arabidopsis lyrata HOM05D004391 ORTHO05D005193 1.2e-22 110.2 72 70.8
AUR62023375 Chenopodium quinoa HOM05D004391 ORTHO05D005193 1.2e-22 110.2 72 65.3
Migut.D00804 Erythranthe guttata HOM05D004391 ORTHO05D005193 1.2e-22 110.2 72 68.1
Hma1.2p1_0170F.1_g075340 Hydrangea macrophylla HOM05D004391 ORTHO05D005193 1.5e-22 109.8 72 68.1
Zm00001eb375180 Zea mays HOM05D004391 ORTHO05D005193 1.5e-22 109.8 72 69.4
Ah.05g177740 Amaranthus hybridus HOM05D004391 ORTHO05D005193 2.0e-22 109.4 72 65.3
ClCG08G017940 Citrullus lanatus HOM05D004391 ORTHO05D005193 2.0e-22 109.4 72 69.4
Sp3g09180 Schrenkiella parvula HOM05D004391 ORTHO05D005193 2.0e-22 109.4 72 68.1
ECA236G4577 Erigeron canadensis HOM05D004391 ORTHO05D005193 3.4e-22 108.6 72 65.3
FvH4_4g32870 Fragaria vesca HOM05D004391 ORTHO05D005193 4.4e-22 108.2 72 65.3
FAN12G3281 Fragaria x ananassa HOM05D004391 ORTHO05D005193 4.4e-22 108.2 72 65.3
HanXRQChr10g0292911 Helianthus annuus HOM05D004391 ORTHO05D005193 7.5e-22 107.5 72 62.5
FAN07G1869 Fragaria x ananassa HOM05D004391 ORTHO05D005193 1.7e-21 106.3 72 63.9
FAN17G0118 Fragaria x ananassa HOM05D004391 ORTHO05D005193 1.7e-21 106.3 72 63.9
FAN22G1549 Fragaria x ananassa HOM05D004391 ORTHO05D005193 1.7e-21 106.3 72 63.9
Aqoxy2G00689 Aquilegia oxysepala HOM05D004391 ORTHO05D005193 2.9e-21 105.5 72 68.1
Medtr5g075690 Medicago truncatula HOM05D004391 ORTHO05D005193 3.7e-21 105.1 73 65.8
TPR.G7542 Trifolium pratense HOM05D004391 ORTHO05D005193 1.9e-20 102.8 72 63.9
Lalb_Chr04g0251641 Lupinus albus HOM05D004391 ORTHO05D005193 3.2e-20 102.1 72 63.9
Lalb_Chr10g0103971 Lupinus albus HOM05D004391 ORTHO05D005193 3.2e-20 102.1 72 62.5
Sed0004860 Sechium edule HOM05D004391 ORTHO05D005193 1.2e-19 100.1 72 65.3
Aa31LG3G4110 Aethionema arabicum HOM05D004391 ORTHO05D005193 1.6e-19 99.8 93 53.8
CBR_g1035 Chara braunii HOM05D004391 ORTHO05D005193 1.6e-19 99.8 72 61.1
Lsat_1_v5_gn_9_13380 Lactuca sativa HOM05D000838 ORTHO05D000656 1.6e-19 99.8 86 57.0
vmacro02862 Vaccinium macrocarpon HOM05D004391 ORTHO05D005193 4.6e-19 98.2 58 75.9
Pp3c11_2590 Physcomitrium patens HOM05D004391 ORTHO05D005193 6.0e-19 97.8 72 59.7
SalBow3G4275 Salvia bowleyana HOM05D004391 ORTHO05D005193 7.8e-19 97.4 102 50.0
Nitab4.5_0002167g0040 Nicotiana tabacum HOM05D004391 ORTHO05D005193 1.0e-18 97.1 62 69.4
Potri.013G159700 Populus trichocarpa HOM05D004391 ORTHO05D005193 1.0e-18 97.1 56 78.6
PGSC0003DMG400020649 Solanum tuberosum HOM05D004391 ORTHO05D005193 1.3e-18 96.7 57 73.7
Pp3c7_21160 Physcomitrium patens HOM05D004391 ORTHO05D005193 1.7e-18 96.3 72 58.3
Pp3c1_1570 Physcomitrium patens HOM05D004391 ORTHO05D005193 2.3e-18 95.9 72 58.3
Nitab4.5_0002902g0130 Nicotiana tabacum HOM05D004391 ORTHO05D005193 5.0e-18 94.7 57 73.7
THA.LOC104823179 Tarenaya hassleriana HOM05D004391 ORTHO05D005193 1.1e-17 93.6 56 76.8
Zm00001eb281780 Zea mays HOM05D004391 ORTHO05D005193 1.5e-17 93.2 56 75.0
AagrBONN_evm.TU.Sc2ySwM_362.2485 Anthoceros agrestis HOM05D004391 ORTHO05D005193 1.9e-17 92.8 72 59.7
Gorai.013G009600 Gossypium raimondii HOM05D004391 ORTHO05D005193 3.3e-17 92.0 57 71.9
Lsat_1_v5_gn_9_13340 Lactuca sativa HOM05D004391 ORTHO05D005193 4.3e-17 91.7 52 76.9
CsaV3_2G024700 Cucumis sativus L. HOM05D004391 ORTHO05D005193 7.3e-17 90.9 58 72.4
Lsat_1_v5_gn_8_98901 Lactuca sativa HOM05D004391 ORTHO05D005193 7.3e-17 90.9 52 73.1
Lsat_1_v5_gn_8_98921 Lactuca sativa HOM05D004391 ORTHO05D005193 7.3e-17 90.9 57 68.4
SGA_v2.0_scaffold122G33334 Striga asiatica HOM05D004391 ORTHO05D005193 9.5e-17 90.5 61 68.9
SHI19278 Sapria himalayana HOM05D004391 ORTHO05D005193 1.6e-16 89.7 62 67.7
VMungo0647G0523 Vigna mungo HOM05D004391 ORTHO05D005193 4.7e-16 88.2 57 70.2
BcaB04g21171 Brassica carinata HOM05D004391 ORTHO05D005193 2.6e-14 82.4 65 60.0
SGA_v2.0_scaffold129G34161 Striga asiatica HOM05D004391 ORTHO05D005193 7.5e-14 80.9 53 71.7
BolC2t06197H Brassica oleracea HOM05D004391 ORTHO05D005193 2.2e-13 79.3 69 56.5
Pp3c13_7360 Physcomitrium patens HOM05D004391 ORTHO05D005193 6.4e-13 77.8 70 48.6
SEGI_31881 Sequoiadendron giganteum HOM05D004391 ORTHO05D005193 6.4e-13 77.8 53 62.3
C02p02320 Brassica napus HOM05D004391 ORTHO05D005193 7.1e-12 74.3 65 56.9
EL10Ac1g00726 Beta vulgaris HOM05D004391 ORTHO05D005193 3.9e-10 68.6 38 76.3
Mapoly0022s0089 Marchantia polymorpha HOM05D004391 ORTHO05D005193 3.9e-10 68.6 64 48.4
DCAR_023068 Daucus carota HOM05D004391 ORTHO05D005193 5.1e-10 68.2 73 49.3
SMO117G0077 Selaginella moellendorffii HOM05D004391 ORTHO05D005193 7.3e-09 64.3 69 44.9
Mapoly0036s0032 Marchantia polymorpha HOM05D004391 ORTHO05D005193 1.2e-08 63.5 70 45.7
DCAR_018583 Daucus carota HOM05D004391 ORTHO05D005193 4.7e-08 61.6 58 48.3
MCO15G410 Micromonas commoda HOM05D004391 ORTHO05D005193 6.2e-08 61.2 72 43.1
Oeu007160.1 Olea europaea HOM05D004391 ORTHO05D005193 6.2e-08 61.2 55 60.0
BcaB05g21720 Brassica carinata HOM05D004391 ORTHO05D005193 8.1e-08 60.8 36 75.0
PRCOL_00006067 Prasinoderma coloniale HOM05D004391 ORTHO05D005193 1.1e-07 60.5 72 37.5


User provided reference genes

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