Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G2365 Fragaria x ananassa HOM05D000462 ORTHO05D206211 4.3e-41 171.0 93 100.0
FAN16G0259 Fragaria x ananassa HOM05D000462 ORTHO05D003661 4.1e-36 154.5 92 93.5
FvH4_3g08560 Fragaria vesca HOM05D000462 ORTHO05D003661 7.0e-36 153.7 92 94.6
FAN11G2527 Fragaria x ananassa HOM05D000462 ORTHO05D003661 7.0e-36 153.7 92 94.6
FAN25G2272 Fragaria x ananassa HOM05D000462 ORTHO05D198862 1.0e-34 149.8 93 93.5
RcHm_v2.0_Chr5g0009281 Rosa chinensis HOM05D000462 ORTHO05D003661 4.7e-24 114.4 92 78.3
MD10G1289000 Malus domestica HOM05D000462 ORTHO05D003661 1.9e-17 92.4 93 68.8
QL05p042444 Quercus lobata HOM05D000462 ORTHO05D003661 2.8e-16 88.6 93 61.3
MD05G1310100 Malus domestica HOM05D000462 ORTHO05D003661 1.1e-15 86.7 93 63.4
QL05p042292 Quercus lobata HOM05D000462 ORTHO05D003661 5.2e-15 84.3 93 61.3
COL.COLO4_31417 Corchorus olitorius HOM05D000462 ORTHO05D003661 3.4e-14 81.6 92 60.9
Thecc.06G180900 Theobroma cacao HOM05D000462 ORTHO05D003661 1.3e-13 79.7 95 62.1
Sp2g10970 Schrenkiella parvula HOM05D000462 ORTHO05D003661 1.7e-13 79.3 93 58.1
Gohir.A09G073600 Gossypium hirsutum HOM05D000462 ORTHO05D003661 2.2e-13 79.0 95 57.9
Hma1.2p1_0558F.1_g178460 Hydrangea macrophylla HOM05D000462 ORTHO05D003661 2.2e-13 79.0 99 57.6
Manes.16G032200 Manihot esculenta HOM05D000462 ORTHO05D003661 2.2e-13 79.0 94 58.5
TWI38G2149 Tripterygium wilfordii HOM05D000462 ORTHO05D003661 3.8e-13 78.2 100 57.0
Gohir.A10G028000 Gossypium hirsutum HOM05D000462 ORTHO05D003661 4.9e-13 77.8 95 60.0
TWI63G1835 Tripterygium wilfordii HOM05D000462 ORTHO05D003661 4.9e-13 77.8 98 56.1
A06p46170 Brassica napus HOM05D000462 ORTHO05D003661 8.4e-13 77.0 93 57.0
BraA06t27481Z Brassica rapa HOM05D000462 ORTHO05D003661 8.4e-13 77.0 93 57.0
BcaC06g31496 Brassica carinata HOM05D000462 ORTHO05D003661 1.4e-12 76.3 92 55.4
Duzib235G1455 Durio zibethinus HOM05D000462 ORTHO05D003661 1.4e-12 76.3 95 57.9
Gorai.006G088300 Gossypium raimondii HOM05D000462 ORTHO05D003661 1.4e-12 76.3 95 56.8
PGR042G1640 Punica granatum HOM05D000462 ORTHO05D003661 1.4e-12 76.3 99 55.6
Ciclev10015416m.g Citrus clementina HOM05D000462 ORTHO05D003661 3.2e-12 75.1 99 56.6
Gohir.D10G028400 Gossypium hirsutum HOM05D000462 ORTHO05D003661 3.2e-12 75.1 95 57.9
Atru.chr10.1797 Acer truncatum HOM05D000462 ORTHO05D003661 4.2e-12 74.7 102 54.9
Sabra11G0040000 Salix brachista HOM05D000462 ORTHO05D003661 4.2e-12 74.7 95 56.8
Aa31LG9G6780 Aethionema arabicum HOM05D000462 ORTHO05D003661 5.4e-12 74.3 96 52.1
Gorai.011G030200 Gossypium raimondii HOM05D000462 ORTHO05D003661 5.4e-12 74.3 95 57.9
Thhalv10000901m.g Eutrema salsugineum HOM05D000462 ORTHO05D003661 1.2e-11 73.2 93 55.9
Gohir.D09G073300 Gossypium hirsutum HOM05D000462 ORTHO05D003661 1.2e-11 73.2 95 55.8
Potri.011G057800 Populus trichocarpa HOM05D000462 ORTHO05D003661 1.6e-11 72.8 95 57.9
Sed0006869 Sechium edule HOM05D000462 ORTHO05D003661 2.1e-11 72.4 95 47.4
BcaC03g16831 Brassica carinata HOM05D000462 ORTHO05D003661 3.5e-11 71.6 94 57.4
C07p29290 Brassica napus HOM05D000462 ORTHO05D003661 4.6e-11 71.2 93 54.8
Cpa.g.sc27.1 Carica papaya HOM05D000462 ORTHO05D003661 4.6e-11 71.2 101 54.5
Manes.17G049400 Manihot esculenta HOM05D000462 ORTHO05D003661 4.6e-11 71.2 95 54.7
Nitab4.5_0003315g0040 Nicotiana tabacum HOM05D000462 ORTHO05D003661 4.6e-11 71.2 94 54.3
CARHR175740 Cardamine hirsuta HOM05D000462 ORTHO05D003661 6.0e-11 70.9 95 51.6
Nitab4.5_0006826g0010 Nicotiana tabacum HOM05D000462 ORTHO05D003661 6.0e-11 70.9 94 58.5
Sabra04G0030700 Salix brachista HOM05D000462 ORTHO05D003661 6.0e-11 70.9 95 55.8
GSVIVG01021114001 Vitis vinifera HOM05D000462 ORTHO05D003661 1.3e-10 69.7 98 50.0
CiPaw.09G063500 Carya illinoinensis HOM05D000462 ORTHO05D003661 3.0e-10 68.6 95 53.7
Haze_06371 Corylus avellana HOM05D000462 ORTHO05D003661 3.0e-10 68.6 97 54.6
BolC7t43471H Brassica oleracea HOM05D000462 ORTHO05D003661 3.9e-10 68.2 93 52.7
AT5G46110 Arabidopsis thaliana HOM05D000462 ORTHO05D003661 5.1e-10 67.8 94 50.0
MELO3C007259.2 Cucumis melo HOM05D000462 ORTHO05D003661 5.1e-10 67.8 96 51.0
Nn1g06410 Nelumbo nucifera HOM05D000462 ORTHO05D003661 1.9e-09 65.9 98 50.0
Hund23810 Selenicereus undatus HOM05D000462 ORTHO05D003661 1.9e-09 65.9 104 51.9
Carub.0008s0182 Capsella rubella HOM05D000462 ORTHO05D003661 2.5e-09 65.5 95 50.5
AUR62031073 Chenopodium quinoa HOM05D000462 ORTHO05D003661 2.5e-09 65.5 99 44.4
Rhsim02G0135000 Rhododendron simsii HOM05D000462 ORTHO05D003661 2.5e-09 65.5 102 52.0
AL8G12380 Arabidopsis lyrata HOM05D000462 ORTHO05D003661 3.3e-09 65.1 96 50.0
Cc02_g13860 Coffea canephora HOM05D000462 ORTHO05D003661 3.3e-09 65.1 100 47.0
ClCG01G023270 Citrullus lanatus HOM05D000462 ORTHO05D003661 4.3e-09 64.7 96 49.0
Lj4g0010932 Lotus japonicus HOM05D000462 ORTHO05D003661 5.6e-09 64.3 96 53.1
Sopen10g004760 Solanum pennellii HOM05D000462 ORTHO05D003661 7.3e-09 63.9 103 46.6
arahy.Tifrunner.gnm1.ann1.012SKZ Arachis hypogaea HOM05D000462 ORTHO05D003661 9.6e-09 63.5 95 50.5
A02p29670 Brassica napus HOM05D000462 ORTHO05D003661 9.6e-09 63.5 92 50.0
BraA02t07992Z Brassica rapa HOM05D000462 ORTHO05D003661 9.6e-09 63.5 92 50.0
AUR62014867 Chenopodium quinoa HOM05D000462 ORTHO05D003661 9.6e-09 63.5 99 42.4
Migut.H01469 Erythranthe guttata HOM05D000462 ORTHO05D003661 1.3e-08 63.2 101 51.5
Ah.09g237580 Amaranthus hybridus HOM05D000462 ORTHO05D003661 1.6e-08 62.8 97 45.4
CSS0029967 Camellia sinensis var. sinensis HOM05D000462 ORTHO05D003661 1.6e-08 62.8 105 47.6
Peaxi162Scf00490g00028 Petunia axillaris HOM05D000462 ORTHO05D003661 2.1e-08 62.4 96 52.1
SalBow8G4854 Salvia bowleyana HOM05D000462 ORTHO05D003661 2.1e-08 62.4 97 49.5
EL10Ac8g20437 Beta vulgaris HOM05D000462 ORTHO05D003661 2.8e-08 62.0 97 44.3
C02p47070 Brassica napus HOM05D000462 ORTHO05D003661 2.8e-08 62.0 92 50.0
BolC2t10755H Brassica oleracea HOM05D000462 ORTHO05D003661 2.8e-08 62.0 92 50.0
arahy.Tifrunner.gnm1.ann1.IN1E3L Arachis hypogaea HOM05D000462 ORTHO05D003661 3.6e-08 61.6 95 49.5
DCAR_028054 Daucus carota HOM05D000462 ORTHO05D003661 3.6e-08 61.6 92 51.1
Psat7g116120 Pisum sativum HOM05D000462 ORTHO05D003661 3.6e-08 61.6 94 51.1
SalBow8G4614 Salvia bowleyana HOM05D000462 ORTHO05D003661 3.6e-08 61.6 97 49.5
Sc17g0005940 Simmondsia chinensis HOM05D000462 ORTHO05D003661 8.1e-08 60.5 99 48.5
PGSC0003DMG400022832 Solanum tuberosum HOM05D000462 ORTHO05D003661 8.1e-08 60.5 102 45.1
Glyma.07G201300 Glycine max HOM05D000462 ORTHO05D003661 1.1e-07 60.1 95 51.6
Lalb_Chr05g0218571 Lupinus albus HOM05D000462 ORTHO05D003661 1.1e-07 60.1 96 50.0
TAR624G1273 Trochodendron aralioides HOM05D000462 ORTHO05D003661 1.8e-07 59.3 99 48.5
Actinidia07603 Actinidia chinensis HOM05D000462 ORTHO05D003661 3.1e-07 58.5 100 45.0
Lj1A1201T79 Lonicera japonica HOM05D000462 ORTHO05D003661 3.1e-07 58.5 100 50.0
Oeu012154.1 Olea europaea HOM05D000462 ORTHO05D003661 5.3e-07 57.8 99 48.5
Actinidia26142 Actinidia chinensis HOM05D000462 ORTHO05D003661 9.0e-07 57.0 100 44.0
CAN.G313.17 Capsicum annuum HOM05D000462 ORTHO05D003661 9.0e-07 57.0 105 43.8
Glyma.13G175100 Glycine max HOM05D000462 ORTHO05D003661 1.2e-06 56.6 96 50.0
Phvul.002G232300 Phaseolus vulgaris HOM05D000462 ORTHO05D003661 1.2e-06 56.6 95 49.5
SGA_v2.0_scaffold22G09661 Striga asiatica HOM05D000462 ORTHO05D003661 1.2e-06 56.6 100 44.0
VMungo0251G1211 Vigna mungo HOM05D000462 ORTHO05D003661 1.5e-06 56.2 96 51.0
Ca_18590_v3 Cicer arietinum L. HOM05D000462 ORTHO05D003661 2.6e-06 55.5 94 50.0
TPR.G19915 Trifolium pratense HOM05D000462 ORTHO05D003661 3.4e-06 55.1 93 48.4
MBI07_g38301_MAGBIO Magnolia biondii HOM05D000462 ORTHO05D003661 7.6e-06 53.9 96 52.1


User provided reference genes

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