Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
FAN21G2282 Fragaria x ananassa HOM05D006577 ORTHO05D011051 2.7e-168 595.9 460 100.0
FAN21G2626 Fragaria x ananassa HOM05D006577 ORTHO05D011051 7.0e-137 491.5 503 85.3
FAN21G2299 Fragaria x ananassa HOM05D006577 ORTHO05D008428 4.4e-131 472.2 456 86.2
FAN21G2462 Fragaria x ananassa HOM05D006577 ORTHO05D011051 4.1e-129 465.7 497 71.2
FAN20G0322 Fragaria x ananassa HOM05D006577 ORTHO05D008428 5.6e-110 402.1 460 62.6
FvH4_2g37380 Fragaria vesca HOM05D006577 ORTHO05D008428 1.7e-74 284.3 263 95.1
FAN27G1697 Fragaria x ananassa HOM05D006577 ORTHO05D008428 1.9e-73 280.8 264 95.1
RcHm_v2.0_Chr6g0304321 Rosa chinensis HOM05D006577 ORTHO05D008428 6.1e-56 222.6 187 80.2
FAN21G1189 Fragaria x ananassa HOM05D008997 ORTHO05D011051 4.0e-55 219.9 201 82.1
FvH4_2g37377 Fragaria vesca HOM05D008997 ORTHO05D011051 7.5e-54 215.7 108 98.1
FAN21G1803 Fragaria x ananassa HOM05D008997 ORTHO05D011051 3.1e-52 210.3 108 96.3
FAN27G1108 Fragaria x ananassa HOM05D008997 ORTHO05D011051 6.5e-50 202.6 123 85.4
FAN21G1848 Fragaria x ananassa HOM05D008997 ORTHO05D011051 7.2e-49 199.1 123 83.7
RcHm_v2.0_Chr6g0304331 Rosa chinensis HOM05D008997 ORTHO05D011051 1.8e-47 194.5 108 88.9
MD08G1001400 Malus domestica HOM05D006577 ORTHO05D008428 1.9e-33 147.9 147 60.5
Prupe.1G353400 Prunus persica HOM05D006577 ORTHO05D008428 1.8e-31 141.4 141 56.0
Prupe.1G353500 Prunus persica HOM05D008997 ORTHO05D011051 8.3e-29 132.5 110 62.7
MD08G1001500 Malus domestica HOM05D008997 ORTHO05D011051 6.0e-27 126.3 112 58.9
MD15G1000800 Malus domestica HOM05D008997 ORTHO05D011051 5.0e-26 123.2 112 58.0
Glyma.11G090300 Glycine max HOM05D006577 ORTHO05D008428 9.5e-25 119.0 61 86.9
QL12p004173 Quercus lobata HOM05D006577 ORTHO05D008428 8.0e-24 115.9 137 58.4
Glyma.01G154300 Glycine max HOM05D006577 ORTHO05D008428 1.1e-23 115.5 61 83.6
arahy.Tifrunner.gnm1.ann1.0U4NMV Arachis hypogaea HOM05D006577 ORTHO05D008428 1.8e-23 114.8 158 48.1
arahy.Tifrunner.gnm1.ann1.Y0J304 Arachis hypogaea HOM05D006577 ORTHO05D008428 1.8e-23 114.8 158 48.1
Dinv41806 Davidia involucrata HOM05D006577 ORTHO05D008428 3.1e-23 114.0 61 86.9
VMungo1215G3406 Vigna mungo HOM05D006577 ORTHO05D008428 8.9e-23 112.5 61 85.2
HanXRQChr07g0198411 Helianthus annuus HOM05D006577 ORTHO05D008428 1.5e-22 111.7 63 82.5
ECA233G0973 Erigeron canadensis HOM05D006577 ORTHO05D008428 2.6e-22 110.9 61 83.6
Lsat_1_v5_gn_6_17281 Lactuca sativa HOM05D006577 ORTHO05D008428 3.4e-22 110.5 62 87.1
GSVIVG01036870001 Vitis vinifera HOM05D006577 ORTHO05D008428 7.5e-22 109.4 63 85.7
Actinidia32789 Actinidia chinensis HOM05D006577 ORTHO05D008428 1.7e-21 108.2 61 83.6
Lj2g0006155 Lotus japonicus HOM05D006577 ORTHO05D008428 2.2e-21 107.8 143 56.6
Peaxi162Scf00193g00730 Petunia axillaris HOM05D006577 ORTHO05D008428 2.2e-21 107.8 61 80.3
CiPaw.11G075200 Carya illinoinensis HOM05D006577 ORTHO05D008428 2.9e-21 107.5 61 80.3
Phvul.002G121300 Phaseolus vulgaris HOM05D006577 ORTHO05D008428 3.7e-21 107.1 177 42.9
Atru.chr8.2629 Acer truncatum HOM05D006577 ORTHO05D008428 4.9e-21 106.7 62 82.3
CsaV3_4G027910 Cucumis sativus L. HOM05D006577 ORTHO05D008428 4.9e-21 106.7 143 46.9
CSS0014058 Camellia sinensis var. sinensis HOM05D006577 ORTHO05D008428 6.4e-21 106.3 62 83.9
Cpa.g.sc90.36 Carica papaya HOM05D006577 ORTHO05D008428 6.4e-21 106.3 62 82.3
Ca_13135_v3 Cicer arietinum L. HOM05D006577 ORTHO05D008428 1.4e-20 105.1 151 47.7
DCAR_030906 Daucus carota HOM05D006577 ORTHO05D008428 1.4e-20 105.1 61 82.0
MSTRG.1757 Avicennia marina HOM05D006577 ORTHO05D008428 1.9e-20 104.8 57 86.0
Sabra01G0180600 Salix brachista HOM05D006577 ORTHO05D008428 2.4e-20 104.4 131 68.7
Lalb_Chr16g0380351 Lupinus albus HOM05D006577 ORTHO05D008428 3.2e-20 104.0 144 53.5
CAN.G1026.7 Capsicum annuum HOM05D006577 ORTHO05D008428 4.1e-20 103.6 60 80.0
Psat1g131640 Pisum sativum HOM05D006577 ORTHO05D008428 4.1e-20 103.6 65 78.5
Sopen08g024050 Solanum pennellii HOM05D006577 ORTHO05D008428 4.1e-20 103.6 61 82.0
Gohir.A08G149500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 5.4e-20 103.2 61 78.7
Medtr2g040410 Medicago truncatula HOM05D006577 ORTHO05D008428 5.4e-20 103.2 162 50.0
Thecc.03G318900 Theobroma cacao HOM05D006577 ORTHO05D008428 5.4e-20 103.2 61 78.7
Rhsim11G0036700 Rhododendron simsii HOM05D006577 ORTHO05D008428 9.2e-20 102.4 62 80.6
TAR629G1131 Trochodendron aralioides HOM05D006577 ORTHO05D008428 1.2e-19 102.1 62 80.6
EL10Ac8g19602 Beta vulgaris HOM05D006577 ORTHO05D008428 1.6e-19 101.7 57 84.2
COL.COLO4_11282 Corchorus olitorius HOM05D006577 ORTHO05D008428 1.6e-19 101.7 61 78.7
Nitab4.5_0000030g0480 Nicotiana tabacum HOM05D006577 ORTHO05D008428 1.6e-19 101.7 60 80.0
vmacro00091 Vaccinium macrocarpon HOM05D006577 ORTHO05D008428 1.6e-19 101.7 62 80.6
Cfa012291 Carpinus fangiana HOM05D000435 ORTHO05D000430 2.0e-19 101.3 95 71.6
Oeu015543.2 Olea europaea HOM05D006577 ORTHO05D008428 2.0e-19 101.3 152 46.1
Sc24g0001520 Simmondsia chinensis HOM05D006577 ORTHO05D008428 2.0e-19 101.3 57 84.2
AUR62030109 Chenopodium quinoa HOM05D006577 ORTHO05D008428 2.7e-19 100.9 89 57.3
ClCG11G016060 Citrullus lanatus HOM05D006577 ORTHO05D008428 2.7e-19 100.9 73 72.6
Cc08_g05650 Coffea canephora HOM05D006577 ORTHO05D008428 2.7e-19 100.9 62 80.6
Eucgr.D02560 Eucalyptus grandis HOM05D006577 ORTHO05D008428 2.7e-19 100.9 62 79.0
Nitab4.5_0007095g0010 Nicotiana tabacum HOM05D006577 ORTHO05D008428 2.7e-19 100.9 61 77.0
Oeu046783.1 Olea europaea HOM05D006577 ORTHO05D008428 2.7e-19 100.9 62 79.0
PSO675G5955 Papaver somniferum HOM05D006577 ORTHO05D008428 2.7e-19 100.9 62 79.0
PSO502G0007 Papaver somniferum HOM05D006577 ORTHO05D008428 3.5e-19 100.5 62 79.0
Solyc08g075420.4 Solanum lycopersicum HOM05D006577 ORTHO05D008428 3.5e-19 100.5 60 80.0
TPR.G29075 Trifolium pratense HOM05D006577 ORTHO05D008428 4.6e-19 100.1 152 54.6
Haze_08434 Corylus avellana HOM05D006577 ORTHO05D008428 6.0e-19 99.8 146 63.7
Gohir.D08G170500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 6.0e-19 99.8 154 50.6
Gorai.004G178000 Gossypium raimondii HOM05D006577 ORTHO05D008428 6.0e-19 99.8 153 51.0
MELO3C010522.2 Cucumis melo HOM05D006577 ORTHO05D008428 7.8e-19 99.4 140 62.9
PGR042G0863 Punica granatum HOM05D006577 ORTHO05D008428 7.8e-19 99.4 64 78.1
Potri.004G236300 Populus trichocarpa HOM05D006577 ORTHO05D008428 1.3e-18 98.6 120 60.0
Zm00001eb227500 Zea mays HOM05D006577 ORTHO05D008428 1.3e-18 98.6 61 75.4
Sed0006082 Sechium edule HOM05D006577 ORTHO05D008428 2.3e-18 97.8 161 46.0
TWI73G0063 Tripterygium wilfordii HOM05D006577 ORTHO05D008428 2.3e-18 97.8 145 43.4
Migut.E01373 Erythranthe guttata HOM05D006577 ORTHO05D008428 3.0e-18 97.4 57 80.7
Lalb_Chr05g0215081 Lupinus albus HOM05D008997 ORTHO05D011051 3.0e-18 97.4 125 42.4
Lalb_Chr09g0324991 Lupinus albus HOM05D008997 ORTHO05D011051 3.9e-18 97.1 125 42.4
Nn7g37388 Nelumbo nucifera HOM05D006577 ORTHO05D008428 3.9e-18 97.1 57 78.9
Aa31LG6G1900 Aethionema arabicum HOM05D006577 ORTHO05D008428 5.0e-18 96.7 61 78.7
CDE12G0431 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 6.6e-18 96.3 56 76.8
Ah.09g232390 Amaranthus hybridus HOM05D006577 ORTHO05D008428 8.6e-18 95.9 57 82.5
CDE01G0285 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 8.6e-18 95.9 56 76.8
Manes.17G000100 Manihot esculenta HOM05D006577 ORTHO05D008428 8.6e-18 95.9 164 41.5
CANSAT35G0698 Cannabis sativa HOM05D006577 ORTHO05D008428 2.5e-17 94.4 60 78.3
Aqoxy7G00896 Aquilegia oxysepala HOM05D006577 ORTHO05D008428 3.3e-17 94.0 167 46.1
Hund17692 Selenicereus undatus HOM05D006577 ORTHO05D008428 3.3e-17 94.0 92 57.6
THA.LOC104806196 Tarenaya hassleriana HOM05D006577 ORTHO05D008428 3.3e-17 94.0 62 71.0
ATR0568G043 Amborella trichopoda HOM05D006577 ORTHO05D008428 5.6e-17 93.2 63 73.0
AUR62042461 Chenopodium quinoa HOM05D006577 ORTHO05D008428 9.5e-17 92.4 53 77.4
Sp7g17900 Schrenkiella parvula HOM05D006577 ORTHO05D008428 1.2e-16 92.0 61 72.1
CiPaw.11G075100 Carya illinoinensis HOM05D008997 ORTHO05D011051 1.6e-16 91.7 104 49.0
AT4G19190 Arabidopsis thaliana HOM05D006577 ORTHO05D008428 2.1e-16 91.3 61 70.5
Ciclev10011516m.g Citrus clementina HOM05D006577 ORTHO05D008428 3.6e-16 90.5 59 71.2
Thhalv10024821m.g Eutrema salsugineum HOM05D006577 ORTHO05D008428 4.7e-16 90.1 57 75.4
Medtr5g025520 Medicago truncatula HOM05D008997 ORTHO05D011051 4.7e-16 90.1 121 44.6
C01p13200 Brassica napus HOM05D006577 ORTHO05D008428 6.2e-16 89.7 158 56.3
BolC1t01294H Brassica oleracea HOM05D006577 ORTHO05D008428 6.2e-16 89.7 158 56.3
SEGI_36653 Sequoiadendron giganteum HOM05D006577 ORTHO05D008428 1.1e-15 89.0 64 73.4
HPP92_002488 Vanilla planifolia HOM05D006577 ORTHO05D008428 1.8e-15 88.2 159 38.4
Glyma.11G090500 Glycine max HOM05D008997 ORTHO05D011051 2.3e-15 87.8 105 47.6
Mapoly0190s0006 Marchantia polymorpha HOM05D006577 ORTHO05D008428 2.3e-15 87.8 68 63.2
FvH4_3g03932 Fragaria vesca HOM05D006577 ORTHO05D008428 3.1e-15 87.4 46 87.0
SMO172G0042 Selaginella moellendorffii HOM05D006577 ORTHO05D008428 3.1e-15 87.4 207 37.2
Psat2g145480 Pisum sativum HOM05D008997 ORTHO05D011051 4.0e-15 87.0 121 43.8
TPR.G8981 Trifolium pratense HOM05D008997 ORTHO05D011051 4.0e-15 87.0 96 46.9
VMungo0464G1626 Vigna mungo HOM05D008997 ORTHO05D011051 4.0e-15 87.0 127 43.3
Phvul.002G121500 Phaseolus vulgaris HOM05D008997 ORTHO05D011051 6.8e-15 86.3 123 43.9
BraA01t01062Z Brassica rapa HOM05D006577 ORTHO05D008428 1.5e-14 85.1 158 53.2
Ca_25045_v3 Cicer arietinum L. HOM05D008997 ORTHO05D011051 1.5e-14 85.1 124 41.1
QL12p004181 Quercus lobata HOM05D008997 ORTHO05D011051 1.5e-14 85.1 113 46.0
AL7G34890 Arabidopsis lyrata HOM05D006577 ORTHO05D008428 2.0e-14 84.7 163 54.0
Lj2g0013331 Lotus japonicus HOM05D008997 ORTHO05D011051 2.6e-14 84.3 125 40.8
Sed0009134 Sechium edule HOM05D008997 ORTHO05D011051 3.4e-14 84.0 78 47.4
Carub.0007s2195 Capsella rubella HOM05D006577 ORTHO05D008428 4.4e-14 83.6 149 48.3
Phvul.004G038900 Phaseolus vulgaris HOM05D008997 ORTHO05D011051 9.9e-14 82.4 123 42.3
A01p11160 Brassica napus HOM05D006577 ORTHO05D008428 1.7e-13 81.6 158 52.5
unitig_37.g12910 Utricularia gibba HOM05D006577 ORTHO05D008428 1.7e-13 81.6 62 64.5
Lj3C28T3 Lonicera japonica HOM05D006577 ORTHO05D008428 2.2e-13 81.3 49 81.6
Pp3c3_31660 Physcomitrium patens HOM05D006577 ORTHO05D008428 2.2e-13 81.3 74 52.7
CARHR226070 Cardamine hirsuta HOM05D006577 ORTHO05D008428 2.9e-13 80.9 154 54.5
Lj3A8T28 Lonicera japonica HOM05D006577 ORTHO05D008428 1.9e-12 78.2 49 79.6
CARHR123800 Cardamine hirsuta HOM05D006577 ORTHO05D008428 7.1e-12 76.3 41 85.4
PGR031G0389 Punica granatum HOM05D008997 ORTHO05D011051 6.0e-11 73.2 85 48.2
Eucgr.D02561 Eucalyptus grandis HOM05D008997 ORTHO05D011051 3.9e-10 70.5 79 48.1
BcaB08g35318 Brassica carinata HOM05D006577 ORTHO05D008428 5.1e-10 70.1 39 82.1
Thecc.03G319000 Theobroma cacao HOM05D008997 ORTHO05D011051 5.1e-10 70.1 86 44.2
COL.COLO4_11281 Corchorus olitorius HOM05D008997 ORTHO05D011051 6.6e-10 69.7 95 42.1
Ciclev10013116m.g Citrus clementina HOM05D008997 ORTHO05D011051 1.1e-09 68.9 70 50.0
BcaC09g51429 Brassica carinata HOM05D006577 ORTHO05D008428 1.5e-09 68.6 152 52.6
Atru.chr8.2628 Acer truncatum HOM05D008997 ORTHO05D011051 2.5e-09 67.8 88 43.2
arahy.Tifrunner.gnm1.ann1.G1G4QR Arachis hypogaea HOM05D008997 ORTHO05D011051 2.5e-09 67.8 149 36.2
arahy.Tifrunner.gnm1.ann1.QSM4Y5 Arachis hypogaea HOM05D008997 ORTHO05D011051 2.5e-09 67.8 149 36.2
CBR_g50314 Chara braunii HOM05D006577 ORTHO05D008428 5.6e-09 66.6 43 72.1
Sabra05G0064400 Salix brachista HOM05D008997 ORTHO05D011051 8.9e-07 59.3 67 43.3
Manes.10G091000 Manihot esculenta HOM05D008997 ORTHO05D011051 1.2e-06 58.9 70 41.4


User provided reference genes

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